Wall clock time and date at job start Tue Mar 31 2020 18:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46918 * 2 1 4 4 O 1.45197 * 109.47361 * 120.00254 * 2 1 3 5 5 C 1.34760 * 117.00062 * 270.00459 * 4 2 1 6 6 O 1.21510 * 119.99915 * 359.97438 * 5 4 2 7 7 C 1.47380 * 119.99779 * 179.97438 * 5 4 2 8 8 C 1.39855 * 120.06988 * 179.97438 * 7 5 4 9 9 C 1.37116 * 119.92248 * 180.27370 * 8 7 5 10 10 C 1.39240 * 120.07112 * 359.50056 * 9 8 7 11 11 N 1.39014 * 119.92376 * 180.23200 * 10 9 8 12 12 C 1.46495 * 120.00118 * 185.83360 * 11 10 9 13 13 C 1.46497 * 119.99786 * 5.83439 * 11 10 9 14 14 C 1.39233 * 120.14916 * 0.50005 * 10 9 8 15 15 C 1.37105 * 120.07854 * 359.75519 * 14 10 9 16 16 C 1.50705 * 109.47162 * 240.00504 * 2 1 3 17 17 O 1.21282 * 119.99841 * 248.67684 * 16 2 1 18 18 N 1.34778 * 119.99999 * 68.67547 * 16 2 1 19 19 C 1.46504 * 120.00054 * 4.56783 * 18 16 2 20 20 C 1.46492 * 120.00226 * 184.56827 * 18 16 2 21 21 C 1.50702 * 109.47345 * 89.99820 * 20 18 16 22 22 H 1.07997 * 119.99795 * 0.02562 * 21 20 18 23 23 C 1.37879 * 119.99771 * 179.97438 * 21 20 18 24 24 N 1.31517 * 119.99664 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00397 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47022 * 89.99659 * 25 23 21 27 27 H 1.48500 * 109.46801 * 209.99522 * 25 23 21 28 28 H 1.48499 * 109.46631 * 329.99422 * 25 23 21 29 29 H 1.08990 * 109.47216 * 306.12738 * 1 2 3 30 30 H 1.08996 * 109.47315 * 66.13012 * 1 2 3 31 31 H 1.09002 * 109.47134 * 186.12712 * 1 2 3 32 32 H 1.08002 * 120.04205 * 0.02562 * 8 7 5 33 33 H 1.07996 * 119.96017 * 179.74436 * 9 8 7 34 34 H 1.09000 * 109.46884 * 90.00060 * 12 11 10 35 35 H 1.08994 * 109.47558 * 209.99772 * 12 11 10 36 36 H 1.08997 * 109.47001 * 330.00459 * 12 11 10 37 37 H 1.08999 * 109.47412 * 5.45607 * 13 11 10 38 38 H 1.09003 * 109.47419 * 125.46329 * 13 11 10 39 39 H 1.09004 * 109.47297 * 245.45886 * 13 11 10 40 40 H 1.08008 * 119.96163 * 179.72595 * 14 10 9 41 41 H 1.07996 * 120.04118 * 179.97438 * 15 14 10 42 42 H 1.09000 * 109.47080 * 86.07951 * 19 18 16 43 43 H 1.08994 * 109.46990 * 206.08164 * 19 18 16 44 44 H 1.09006 * 109.47062 * 326.08373 * 19 18 16 45 45 H 1.09002 * 109.47518 * 210.00084 * 20 18 16 46 46 H 1.09011 * 109.46836 * 329.99929 * 20 18 16 47 47 H 0.96999 * 120.00176 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0141 -0.6845 1.1855 5 6 2.2179 0.0669 2.2854 6 8 1.9977 1.2614 2.2546 7 6 2.7080 -0.5603 3.5258 8 6 2.9206 0.2181 4.6681 9 6 3.3820 -0.3676 5.8188 10 6 3.6289 -1.7375 5.8539 11 7 4.0920 -2.3289 7.0236 12 6 4.4738 -3.7432 7.0278 13 6 4.1983 -1.5378 8.2520 14 6 3.4183 -2.5153 4.7185 15 6 2.9620 -1.9352 3.5630 16 6 2.0324 -0.7103 -1.2306 17 8 2.5946 -1.7799 -1.1263 18 7 1.8568 -0.1570 -2.4469 19 6 1.2682 1.1793 -2.5658 20 6 2.2545 -0.8918 -3.6502 21 6 1.0950 -1.7213 -4.1385 22 1 0.1556 -1.7027 -3.6060 23 6 1.2331 -2.5032 -5.2658 24 7 0.2214 -3.2275 -5.6916 25 14 2.8577 -2.5349 -6.1872 26 1 3.7181 -3.6129 -5.6367 27 1 2.6046 -2.7908 -7.6280 28 1 3.5418 -1.2263 -6.0295 29 1 -0.3633 0.6058 0.8300 30 1 -0.3634 0.4158 -0.9397 31 1 -0.3633 -1.0218 0.1097 32 1 2.7255 1.2800 4.6427 33 1 3.5503 0.2336 6.7000 34 1 5.5310 -3.8349 6.7788 35 1 4.2958 -4.1647 8.0171 36 1 3.8789 -4.2824 6.2907 37 1 3.7824 -0.5448 8.0818 38 1 3.6451 -2.0314 9.0511 39 1 5.2465 -1.4487 8.5373 40 1 3.6150 -3.5769 4.7478 41 1 2.7992 -2.5390 2.6826 42 1 2.0517 1.9312 -2.4707 43 1 0.7855 1.2785 -3.5379 44 1 0.5297 1.3225 -1.7769 45 1 2.5485 -0.1856 -4.4267 46 1 3.0953 -1.5449 -3.4159 47 1 0.3186 -3.7779 -6.4844 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052421919.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:54 Heat of formation + Delta-G solvation = -84.605947 kcal Electronic energy + Delta-G solvation = -28325.409406 eV Core-core repulsion = 24280.712793 eV Total energy + Delta-G solvation = -4044.696612 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.92271 -40.87055 -40.20879 -37.70197 -37.03192 -36.73939 -34.83425 -33.26463 -32.35170 -31.33169 -30.17853 -29.07826 -27.71438 -26.81545 -25.78351 -24.35758 -23.25804 -23.02555 -21.39975 -20.41470 -19.41981 -19.13608 -18.44514 -18.05148 -17.42746 -17.17727 -16.91246 -16.57820 -16.30351 -16.09860 -16.01015 -15.67413 -15.07889 -14.83191 -14.72956 -14.63540 -14.37518 -14.26026 -13.76776 -13.75484 -13.54158 -13.51362 -13.37035 -13.29958 -13.17294 -12.92907 -12.89630 -12.83875 -12.50297 -12.36056 -12.01529 -11.92112 -11.74911 -11.74171 -11.63444 -10.95360 -10.83023 -10.68260 -10.09195 -9.50138 -8.37922 -8.33648 -6.39071 -0.17976 0.44820 1.28691 1.35224 1.37894 1.46147 1.51196 1.56393 2.10668 2.31303 2.36486 2.84066 3.00311 3.36728 3.61662 3.73614 3.81135 3.82598 3.87194 4.18063 4.20968 4.34359 4.37630 4.47771 4.52616 4.52834 4.56304 4.59779 4.62280 4.76167 4.76553 4.84031 4.88633 4.91325 4.91892 5.08515 5.11295 5.14601 5.17311 5.38340 5.43240 5.45357 5.52933 5.66138 6.19076 6.21935 6.35787 6.47919 6.62260 6.68870 7.13647 7.27983 8.82845 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018920 B = 0.002314 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.525411 B =12098.847045 C =13030.673779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 H 0.124 0.876 4 O -0.342 6.342 5 C 0.511 3.489 6 O -0.536 6.536 7 C -0.219 4.219 8 C -0.001 4.001 9 C -0.214 4.214 10 C 0.253 3.747 11 N -0.627 5.627 12 C 0.079 3.921 13 C 0.076 3.924 14 C -0.220 4.220 15 C -0.015 4.015 16 C 0.503 3.497 17 O -0.574 6.574 18 N -0.597 5.597 19 C 0.059 3.941 20 C 0.223 3.777 21 C -0.537 4.537 22 H 0.034 0.966 23 C 0.012 3.988 24 N -0.942 5.942 25 Si 0.946 3.054 26 H -0.277 1.277 27 H -0.274 1.274 28 H -0.238 1.238 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.142 0.858 33 H 0.161 0.839 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.147 0.853 41 H 0.125 0.875 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.058 0.942 46 H 0.020 0.980 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.904 7.752 29.099 31.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.023 3.977 3 H 0.141 0.859 4 O -0.258 6.258 5 C 0.360 3.640 6 O -0.428 6.428 7 C -0.222 4.222 8 C -0.021 4.021 9 C -0.236 4.236 10 C 0.146 3.854 11 N -0.334 5.334 12 C -0.063 4.063 13 C -0.065 4.065 14 C -0.242 4.242 15 C -0.035 4.035 16 C 0.290 3.710 17 O -0.454 6.454 18 N -0.329 5.329 19 C -0.083 4.083 20 C 0.101 3.899 21 C -0.576 4.576 22 H 0.052 0.948 23 C -0.186 4.186 24 N -0.582 5.582 25 Si 0.769 3.231 26 H -0.203 1.203 27 H -0.199 1.199 28 H -0.161 1.161 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.078 0.922 32 H 0.159 0.841 33 H 0.178 0.822 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.164 0.836 41 H 0.143 0.857 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.110 0.890 45 H 0.076 0.924 46 H 0.038 0.962 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.151 7.329 29.176 31.167 hybrid contribution 0.142 -0.560 -1.083 1.227 sum 8.293 6.769 28.093 30.064 Atomic orbital electron populations 1.22281 0.90388 1.03944 1.05441 1.22473 0.97058 0.97189 0.80954 0.85898 1.86687 1.77227 1.41903 1.19967 1.21625 0.73565 0.84899 0.83954 1.90747 1.50927 1.16411 1.84761 1.18858 1.16240 0.95206 0.91895 1.20954 0.91105 1.00030 0.89962 1.20766 1.09876 0.93098 0.99849 1.18275 0.88344 0.92162 0.86658 1.46666 1.67588 1.11364 1.07754 1.21922 1.00503 0.79743 1.04176 1.22025 1.02685 0.96917 0.84910 1.20715 1.10059 1.01092 0.92321 1.21153 0.91096 0.93177 0.98026 1.20608 0.79609 0.85591 0.85161 1.90644 1.44142 1.23800 1.86776 1.47802 1.61041 1.18863 1.05193 1.22346 0.99547 0.81435 1.04935 1.19451 0.94895 0.92411 0.83160 1.21524 0.98481 1.26636 1.10932 0.94813 1.25826 1.00621 0.94141 0.98030 1.70040 1.33429 1.29343 1.25409 0.85739 0.79223 0.80372 0.77776 1.20313 1.19922 1.16066 0.88855 0.88048 0.92180 0.84062 0.82153 0.92415 0.89180 0.90871 0.89486 0.90669 0.91443 0.83592 0.85666 0.90028 0.89992 0.89005 0.92444 0.96172 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.88 9.16 71.98 0.66 -4.22 16 2 C 0.08 2.85 2.17 29.85 0.06 2.91 16 3 H 0.12 3.78 6.73 -2.39 -0.02 3.77 16 4 O -0.34 -12.56 8.67 -50.37 -0.44 -12.99 16 5 C 0.51 16.63 7.86 70.23 0.55 17.19 16 6 O -0.54 -18.04 15.59 19.80 0.31 -17.73 16 7 C -0.22 -5.95 5.88 -20.09 -0.12 -6.07 16 8 C 0.00 -0.03 9.56 22.40 0.21 0.18 16 9 C -0.21 -3.49 9.22 22.25 0.21 -3.29 16 10 C 0.25 4.26 6.54 38.48 0.25 4.51 16 11 N -0.63 -7.15 3.39 -747.32 -2.53 -9.68 16 12 C 0.08 0.62 10.34 127.77 1.32 1.94 16 13 C 0.08 0.44 10.58 127.77 1.35 1.79 16 14 C -0.22 -4.36 9.20 22.24 0.20 -4.16 16 15 C -0.02 -0.39 9.58 22.40 0.21 -0.17 16 16 C 0.50 22.25 7.03 87.66 0.62 22.86 16 17 O -0.57 -30.90 16.08 15.61 0.25 -30.64 16 18 N -0.60 -25.13 2.86 -851.11 -2.43 -27.56 16 19 C 0.06 1.73 9.81 127.77 1.25 2.99 16 20 C 0.22 11.00 4.25 85.64 0.36 11.36 16 21 C -0.54 -31.64 9.94 25.60 0.25 -31.39 16 22 H 0.03 2.20 8.06 -2.91 -0.02 2.18 16 23 C 0.01 0.72 5.47 84.65 0.46 1.18 16 24 N -0.94 -59.54 13.96 21.45 0.30 -59.24 16 25 Si 0.95 44.61 27.47 68.60 1.88 46.49 16 26 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 27 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 28 H -0.24 -10.04 6.54 99.48 0.65 -9.39 16 29 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.10 2.79 5.45 -2.39 -0.01 2.77 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.14 2.79 7.64 -2.91 -0.02 2.77 16 33 H 0.16 1.60 5.81 -2.91 -0.02 1.59 16 34 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.09 0.35 8.07 -2.39 -0.02 0.33 16 36 H 0.07 0.62 5.97 -2.39 -0.01 0.60 16 37 H 0.09 0.41 5.37 -2.39 -0.01 0.39 16 38 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.07 0.28 8.14 -2.38 -0.02 0.26 16 40 H 0.15 2.33 6.00 -2.91 -0.02 2.31 16 41 H 0.13 3.54 7.60 -2.91 -0.02 3.52 16 42 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.08 2.44 8.04 -2.39 -0.02 2.42 16 44 H 0.09 2.28 4.30 -2.38 -0.01 2.27 16 45 H 0.06 2.56 7.13 -2.39 -0.02 2.54 16 46 H 0.02 1.08 6.79 -2.38 -0.02 1.06 16 47 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -82.82 385.47 6.15 -76.67 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.94 Total: 17.07 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 7.87 Total: 17.62 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -4.67 Total: -96.48 kcal Atomic # 8 Polarization: -61.49 SS G_CDS: 0.12 Total: -61.37 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Total: -82.82 6.15 -76.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052421919.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.937 kcal (2) G-P(sol) polarization free energy of solvation -82.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds