Wall clock time and date at job start Tue Mar 31 2020 18:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47433 * 2 1 4 4 C 1.50703 * 109.46743 * 119.99470 * 2 1 3 5 5 O 1.21280 * 120.00062 * 120.00114 * 4 2 1 6 6 N 1.34778 * 119.99944 * 299.99878 * 4 2 1 7 7 C 1.46499 * 120.00160 * 0.02562 * 6 4 2 8 8 C 1.46499 * 120.00085 * 180.02562 * 6 4 2 9 9 C 1.50700 * 109.47265 * 89.99554 * 8 6 4 10 10 H 1.08002 * 119.99549 * 0.02562 * 9 8 6 11 11 C 1.37880 * 120.00260 * 179.97438 * 9 8 6 12 12 N 1.31515 * 119.99973 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00158 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47218 * 90.00221 * 13 11 9 15 15 H 1.48500 * 109.47403 * 210.00137 * 13 11 9 16 16 H 1.48506 * 109.47025 * 330.00127 * 13 11 9 17 17 N 1.46894 * 109.47085 * 239.99232 * 2 1 3 18 18 C 1.46892 * 111.00119 * 306.04915 * 17 2 1 19 19 C 1.46904 * 110.99920 * 70.00668 * 17 2 1 20 20 C 1.50699 * 109.46943 * 169.99950 * 19 17 2 21 21 C 1.38247 * 119.92634 * 270.01587 * 20 19 17 22 22 C 1.38240 * 120.14459 * 179.75199 * 21 20 19 23 23 C 1.38552 * 120.02633 * 0.42901 * 22 21 20 24 24 C 1.39265 * 119.82706 * 359.57585 * 23 22 21 25 25 C 1.38231 * 119.92969 * 89.99999 * 20 19 17 26 26 O 1.36496 * 108.64230 * 180.24572 * 24 23 22 27 27 C 1.43981 * 105.48444 * 342.72036 * 26 24 23 28 28 O 1.36505 * 131.53353 * 179.87931 * 23 22 21 29 29 H 1.09002 * 109.47064 * 300.01272 * 1 2 3 30 30 H 1.09009 * 109.46626 * 60.00361 * 1 2 3 31 31 H 1.08992 * 109.47331 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47110 * 90.00279 * 7 6 4 33 33 H 1.08995 * 109.47463 * 210.00127 * 7 6 4 34 34 H 1.08996 * 109.47049 * 330.00068 * 7 6 4 35 35 H 1.08996 * 109.47723 * 210.00037 * 8 6 4 36 36 H 1.09003 * 109.46888 * 329.99920 * 8 6 4 37 37 H 0.97001 * 120.00131 * 179.97438 * 12 11 9 38 38 H 1.09007 * 109.47368 * 183.95362 * 18 17 2 39 39 H 1.09000 * 109.47317 * 303.95076 * 18 17 2 40 40 H 1.08993 * 109.47555 * 63.95589 * 18 17 2 41 41 H 1.08993 * 109.47082 * 49.99836 * 19 17 2 42 42 H 1.08998 * 109.46415 * 289.99750 * 19 17 2 43 43 H 1.07994 * 119.93290 * 0.02562 * 21 20 19 44 44 H 1.07997 * 119.99327 * 180.33354 * 22 21 20 45 45 H 1.08003 * 119.98943 * 0.02562 * 25 20 19 46 46 H 1.09007 * 110.56955 * 268.54960 * 27 26 24 47 47 H 1.09003 * 110.57719 * 145.67764 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7295 -1.6964 1.1194 6 7 1.7066 -0.2497 2.4546 7 6 0.8640 0.9411 2.5889 8 6 2.1953 -0.9399 3.6509 9 6 3.5227 -0.3559 4.0608 10 1 3.9585 0.4492 3.4877 11 6 4.1804 -0.8486 5.1679 12 7 3.6495 -1.8286 5.8661 13 14 5.8254 -0.1243 5.6764 14 1 5.6006 1.0010 6.6189 15 1 6.6429 -1.1708 6.3409 16 1 6.5403 0.3728 4.4734 17 7 2.0197 -0.6926 -1.1993 18 6 1.4343 -2.0355 -1.3075 19 6 1.7530 0.0970 -2.4090 20 6 2.4775 -0.5167 -3.5793 21 6 3.7659 -0.1155 -3.8802 22 6 4.4366 -0.6792 -4.9495 23 6 3.8149 -1.6420 -5.7282 24 6 2.5171 -2.0460 -5.4251 25 6 1.8526 -1.4796 -4.3493 26 8 2.1347 -2.9974 -6.3260 27 6 3.0556 -2.8771 -7.4263 28 8 4.2457 -2.3402 -6.8192 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.1839 0.6428 2.6225 33 1 1.1217 1.4668 3.5083 34 1 1.0272 1.5997 1.7359 35 1 1.4775 -0.8146 4.4615 36 1 2.3168 -2.0012 3.4339 37 1 4.1123 -2.1755 6.6448 38 1 1.8664 -2.5523 -2.1646 39 1 1.6466 -2.5988 -0.3988 40 1 0.3556 -1.9521 -1.4397 41 1 2.1027 1.1186 -2.2604 42 1 0.6815 0.1051 -2.6087 43 1 4.2511 0.6366 -3.2759 44 1 5.4449 -0.3679 -5.1791 45 1 0.8460 -1.7910 -4.1121 46 1 2.6662 -2.1908 -8.1784 47 1 3.2572 -3.8541 -7.8657 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057622343.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:19 Heat of formation + Delta-G solvation = -41.442290 kcal Electronic energy + Delta-G solvation = -28994.921485 eV Core-core repulsion = 24952.096589 eV Total energy + Delta-G solvation = -4042.824896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.35722 -39.85525 -38.50545 -36.57686 -36.45358 -34.81060 -32.76899 -31.82657 -30.62042 -29.80055 -27.53629 -27.31513 -26.25592 -25.84532 -24.92276 -23.40676 -23.09189 -22.09770 -20.70208 -18.38136 -18.11167 -17.72615 -17.54592 -16.70107 -16.47309 -16.34426 -15.68870 -15.16839 -14.88927 -14.68523 -14.56592 -14.29075 -14.08892 -14.03885 -13.82685 -13.48117 -13.20616 -13.14005 -12.95561 -12.77049 -12.34895 -12.19109 -12.13087 -11.92311 -11.53869 -11.41985 -11.29895 -11.24314 -11.07616 -10.97694 -10.94699 -10.84061 -10.54119 -10.12180 -9.58339 -9.02909 -8.78210 -8.40932 -8.26970 -8.05216 -7.58287 -6.01591 -4.06000 0.93712 1.05150 2.53409 3.19542 3.29145 3.32162 3.39041 3.42785 3.49774 3.83448 4.27611 4.30774 4.37028 4.48378 4.54863 4.66879 4.81763 4.96891 4.98523 5.06440 5.16771 5.18164 5.23949 5.32959 5.36279 5.42516 5.55417 5.61933 5.68335 5.75668 5.81871 5.84569 5.89378 5.92726 6.04398 6.09324 6.21575 6.26392 6.36659 6.40540 6.91630 6.96519 7.14266 7.18381 7.47339 7.58385 7.95296 8.26486 8.46275 8.94274 9.17115 9.59172 11.06468 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016929 B = 0.002510 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.553078 B =11153.616522 C =11966.115913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.064 3.936 3 H 0.102 0.898 4 C 0.512 3.488 5 O -0.521 6.521 6 N -0.603 5.603 7 C 0.082 3.918 8 C 0.247 3.753 9 C -0.524 4.524 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.510 5.510 18 C 0.014 3.986 19 C 0.095 3.905 20 C -0.061 4.061 21 C -0.084 4.084 22 C -0.100 4.100 23 C 0.027 3.973 24 C 0.028 3.972 25 C -0.092 4.092 26 O -0.310 6.310 27 C 0.214 3.786 28 O -0.311 6.311 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.022 0.978 41 H 0.087 0.913 42 H 0.046 0.954 43 H 0.141 0.859 44 H 0.135 0.865 45 H 0.132 0.868 46 H 0.082 0.918 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.539 5.451 -23.907 25.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.048 4.048 3 H 0.120 0.880 4 C 0.297 3.703 5 O -0.397 6.397 6 N -0.337 5.337 7 C -0.062 4.062 8 C 0.128 3.872 9 C -0.563 4.563 10 H 0.075 0.925 11 C -0.142 4.142 12 N -0.535 5.535 13 Si 0.726 3.274 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.198 1.198 17 N -0.233 5.233 18 C -0.133 4.133 19 C -0.032 4.032 20 C -0.062 4.062 21 C -0.103 4.103 22 C -0.118 4.118 23 C -0.017 4.017 24 C -0.017 4.017 25 C -0.111 4.111 26 O -0.227 6.227 27 C 0.102 3.898 28 O -0.227 6.227 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.111 0.889 40 H 0.040 0.960 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.159 0.841 44 H 0.153 0.847 45 H 0.150 0.850 46 H 0.099 0.901 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.578 4.529 -23.824 25.127 hybrid contribution 0.039 0.348 0.048 0.353 sum -6.539 4.877 -23.776 25.136 Atomic orbital electron populations 1.22670 0.95976 1.03355 1.03424 1.21680 0.93820 0.98839 0.90452 0.88032 1.20016 0.81160 0.85249 0.83880 1.90644 1.36913 1.26363 1.85772 1.48119 1.49934 1.28339 1.07268 1.21768 0.93704 0.88268 1.02432 1.19263 0.94151 0.93696 0.80110 1.21435 1.04851 1.18963 1.11024 0.92466 1.24938 0.97940 0.94972 0.96324 1.69932 1.39082 1.26128 1.18363 0.86500 0.83714 0.78650 0.78586 1.20707 1.21123 1.19837 1.61849 1.58796 1.02739 0.99866 1.22653 0.95752 0.90369 1.04563 1.21041 0.97385 0.97171 0.87623 1.19443 0.94738 0.96470 0.95575 1.20849 0.93665 1.00273 0.95485 1.20092 1.01024 0.95102 0.95601 1.19816 0.92915 0.96876 0.92127 1.19701 0.93681 0.92531 0.95743 1.19941 1.00496 0.96837 0.93806 1.87357 1.53749 1.52129 1.29439 1.25586 0.74926 1.00897 0.88412 1.87356 1.30892 1.65251 1.39228 0.90086 0.92125 0.91709 0.93596 0.90887 0.92417 0.95110 0.93904 0.92761 0.91590 0.88941 0.95972 0.89441 0.93566 0.84113 0.84692 0.85031 0.90083 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.24 8.08 37.16 0.30 -1.94 16 2 C 0.06 0.93 1.93 -68.86 -0.13 0.80 16 3 H 0.10 1.32 7.19 -51.93 -0.37 0.95 16 4 C 0.51 10.46 6.77 -10.98 -0.07 10.38 16 5 O -0.52 -13.07 13.91 5.56 0.08 -12.99 16 6 N -0.60 -12.54 2.86 -182.96 -0.52 -13.06 16 7 C 0.08 1.25 8.80 59.85 0.53 1.77 16 8 C 0.25 6.44 5.16 -5.19 -0.03 6.41 16 9 C -0.52 -14.89 9.39 -34.44 -0.32 -15.21 16 10 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 13 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 17 N -0.51 -7.33 4.44 -237.74 -1.06 -8.38 16 18 C 0.01 0.21 8.09 60.06 0.49 0.69 16 19 C 0.10 1.01 4.69 -4.97 -0.02 0.99 16 20 C -0.06 -0.68 4.88 -104.62 -0.51 -1.19 16 21 C -0.08 -0.90 9.69 -39.58 -0.38 -1.28 16 22 C -0.10 -1.08 10.06 -39.46 -0.40 -1.47 16 23 C 0.03 0.32 7.15 -39.08 -0.28 0.04 16 24 C 0.03 0.33 7.15 -39.08 -0.28 0.05 16 25 C -0.09 -1.03 7.97 -39.47 -0.31 -1.35 16 26 O -0.31 -3.54 11.40 -45.68 -0.52 -4.06 16 27 C 0.21 1.74 8.89 101.05 0.90 2.64 16 28 O -0.31 -3.51 11.40 -45.70 -0.52 -4.04 16 29 H 0.08 0.87 4.53 -51.93 -0.24 0.64 16 30 H 0.06 0.55 6.91 -51.92 -0.36 0.19 16 31 H 0.06 0.81 6.42 -51.93 -0.33 0.47 16 32 H 0.05 0.59 6.95 -51.93 -0.36 0.23 16 33 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 34 H 0.06 0.70 6.01 -51.93 -0.31 0.39 16 35 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.07 0.94 6.16 -51.92 -0.32 0.62 16 39 H 0.09 1.68 5.82 -51.93 -0.30 1.38 16 40 H 0.02 0.28 6.46 -51.93 -0.34 -0.06 16 41 H 0.09 0.80 7.87 -51.93 -0.41 0.39 16 42 H 0.05 0.43 7.00 -51.93 -0.36 0.06 16 43 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 44 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 45 H 0.13 1.32 8.03 -52.48 -0.42 0.90 16 46 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 373.75 15.07 5.63 5.63 Total: -1.00 -35.28 373.75 -8.41 -43.70 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.59 Total: -0.73 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -0.63 Total: 2.97 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.84 Total: -47.48 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.96 Total: -21.09 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.28 -8.41 -43.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057622343.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.254 kcal (2) G-P(sol) polarization free energy of solvation -35.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds