Wall clock time and date at job start Tue Mar 31 2020 18:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47433 * 2 1 4 4 C 1.50703 * 109.46743 * 119.99470 * 2 1 3 5 5 O 1.21280 * 120.00062 * 120.00114 * 4 2 1 6 6 N 1.34778 * 119.99944 * 299.99878 * 4 2 1 7 7 C 1.46499 * 120.00160 * 0.02562 * 6 4 2 8 8 C 1.46499 * 120.00085 * 180.02562 * 6 4 2 9 9 C 1.50700 * 109.47265 * 89.99554 * 8 6 4 10 10 H 1.08002 * 119.99549 * 0.02562 * 9 8 6 11 11 C 1.37880 * 120.00260 * 179.97438 * 9 8 6 12 12 N 1.31515 * 119.99973 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00158 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47218 * 90.00221 * 13 11 9 15 15 H 1.48500 * 109.47403 * 210.00137 * 13 11 9 16 16 H 1.48506 * 109.47025 * 330.00127 * 13 11 9 17 17 N 1.46894 * 109.47085 * 239.99232 * 2 1 3 18 18 C 1.46892 * 111.00119 * 306.04915 * 17 2 1 19 19 C 1.46904 * 110.99920 * 70.00668 * 17 2 1 20 20 C 1.50699 * 109.46943 * 169.99950 * 19 17 2 21 21 C 1.38247 * 119.92634 * 270.01587 * 20 19 17 22 22 C 1.38240 * 120.14459 * 179.75199 * 21 20 19 23 23 C 1.38552 * 120.02633 * 0.42901 * 22 21 20 24 24 C 1.39265 * 119.82706 * 359.57585 * 23 22 21 25 25 C 1.38231 * 119.92969 * 89.99999 * 20 19 17 26 26 O 1.36496 * 108.64230 * 180.24572 * 24 23 22 27 27 C 1.43981 * 105.48444 * 342.72036 * 26 24 23 28 28 O 1.36505 * 131.53353 * 179.87931 * 23 22 21 29 29 H 1.09002 * 109.47064 * 300.01272 * 1 2 3 30 30 H 1.09009 * 109.46626 * 60.00361 * 1 2 3 31 31 H 1.08992 * 109.47331 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47110 * 90.00279 * 7 6 4 33 33 H 1.08995 * 109.47463 * 210.00127 * 7 6 4 34 34 H 1.08996 * 109.47049 * 330.00068 * 7 6 4 35 35 H 1.08996 * 109.47723 * 210.00037 * 8 6 4 36 36 H 1.09003 * 109.46888 * 329.99920 * 8 6 4 37 37 H 0.97001 * 120.00131 * 179.97438 * 12 11 9 38 38 H 1.09007 * 109.47368 * 183.95362 * 18 17 2 39 39 H 1.09000 * 109.47317 * 303.95076 * 18 17 2 40 40 H 1.08993 * 109.47555 * 63.95589 * 18 17 2 41 41 H 1.08993 * 109.47082 * 49.99836 * 19 17 2 42 42 H 1.08998 * 109.46415 * 289.99750 * 19 17 2 43 43 H 1.07994 * 119.93290 * 0.02562 * 21 20 19 44 44 H 1.07997 * 119.99327 * 180.33354 * 22 21 20 45 45 H 1.08003 * 119.98943 * 0.02562 * 25 20 19 46 46 H 1.09007 * 110.56955 * 268.54960 * 27 26 24 47 47 H 1.09003 * 110.57719 * 145.67764 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7295 -1.6964 1.1194 6 7 1.7066 -0.2497 2.4546 7 6 0.8640 0.9411 2.5889 8 6 2.1953 -0.9399 3.6509 9 6 3.5227 -0.3559 4.0608 10 1 3.9585 0.4492 3.4877 11 6 4.1804 -0.8486 5.1679 12 7 3.6495 -1.8286 5.8661 13 14 5.8254 -0.1243 5.6764 14 1 5.6006 1.0010 6.6189 15 1 6.6429 -1.1708 6.3409 16 1 6.5403 0.3728 4.4734 17 7 2.0197 -0.6926 -1.1993 18 6 1.4343 -2.0355 -1.3075 19 6 1.7530 0.0970 -2.4090 20 6 2.4775 -0.5167 -3.5793 21 6 3.7659 -0.1155 -3.8802 22 6 4.4366 -0.6792 -4.9495 23 6 3.8149 -1.6420 -5.7282 24 6 2.5171 -2.0460 -5.4251 25 6 1.8526 -1.4796 -4.3493 26 8 2.1347 -2.9974 -6.3260 27 6 3.0556 -2.8771 -7.4263 28 8 4.2457 -2.3402 -6.8192 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.1839 0.6428 2.6225 33 1 1.1217 1.4668 3.5083 34 1 1.0272 1.5997 1.7359 35 1 1.4775 -0.8146 4.4615 36 1 2.3168 -2.0012 3.4339 37 1 4.1123 -2.1755 6.6448 38 1 1.8664 -2.5523 -2.1646 39 1 1.6466 -2.5988 -0.3988 40 1 0.3556 -1.9521 -1.4397 41 1 2.1027 1.1186 -2.2604 42 1 0.6815 0.1051 -2.6087 43 1 4.2511 0.6366 -3.2759 44 1 5.4449 -0.3679 -5.1791 45 1 0.8460 -1.7910 -4.1121 46 1 2.6662 -2.1908 -8.1784 47 1 3.2572 -3.8541 -7.8657 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057622343.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:18 Heat of formation + Delta-G solvation = -66.575713 kcal Electronic energy + Delta-G solvation = -28996.011352 eV Core-core repulsion = 24952.096589 eV Total energy + Delta-G solvation = -4043.914763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.12754 -41.18467 -39.52315 -37.68777 -37.28161 -36.51618 -34.78237 -32.89991 -31.43636 -30.94797 -29.30247 -28.22571 -27.58310 -26.69751 -26.08740 -25.04567 -23.91779 -23.26581 -21.83431 -19.81208 -18.91550 -18.69297 -18.52373 -18.32581 -17.83981 -17.36275 -17.01745 -16.54486 -16.36952 -15.84514 -15.60707 -15.46366 -15.25601 -14.98241 -14.86378 -14.43432 -14.34781 -14.29463 -13.99795 -13.98439 -13.66379 -13.47865 -13.29992 -13.25844 -12.92157 -12.81210 -12.63777 -12.52018 -12.38242 -12.37225 -12.20699 -12.07490 -11.91358 -11.71520 -11.65868 -10.62298 -10.34609 -9.85178 -9.36536 -9.15923 -8.98225 -8.20202 -6.34830 0.09888 0.23260 1.37127 1.40690 1.50927 1.79841 1.94952 2.24941 2.40833 2.52806 2.59767 3.09082 3.20885 3.48943 3.73484 3.77645 3.80059 4.03302 4.05714 4.14422 4.20129 4.25259 4.30345 4.40422 4.41930 4.49266 4.57185 4.66973 4.68508 4.76543 4.80394 4.88491 5.00235 5.04274 5.05533 5.08305 5.17596 5.24166 5.26358 5.29337 5.44695 5.55334 5.60028 5.88094 6.02207 6.09464 6.11960 6.17847 6.74034 6.88853 7.31953 7.60942 8.86514 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016929 B = 0.002510 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.553078 B =11153.616522 C =11966.115913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.078 3.922 3 H 0.128 0.872 4 C 0.499 3.501 5 O -0.581 6.581 6 N -0.611 5.611 7 C 0.076 3.924 8 C 0.262 3.738 9 C -0.538 4.538 10 H 0.053 0.947 11 C 0.005 3.995 12 N -0.930 5.930 13 Si 0.967 3.033 14 H -0.262 1.262 15 H -0.283 1.283 16 H -0.273 1.273 17 N -0.534 5.534 18 C 0.025 3.975 19 C 0.099 3.901 20 C -0.068 4.068 21 C -0.088 4.088 22 C -0.107 4.107 23 C 0.011 3.989 24 C 0.010 3.990 25 C -0.097 4.097 26 O -0.328 6.328 27 C 0.205 3.795 28 O -0.327 6.327 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.022 0.978 36 H -0.007 1.007 37 H 0.266 0.734 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.045 0.955 41 H 0.110 0.890 42 H 0.069 0.931 43 H 0.156 0.844 44 H 0.150 0.850 45 H 0.141 0.859 46 H 0.106 0.894 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.169 8.174 -25.386 27.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.034 4.034 3 H 0.146 0.854 4 C 0.287 3.713 5 O -0.461 6.461 6 N -0.343 5.343 7 C -0.066 4.066 8 C 0.140 3.860 9 C -0.577 4.577 10 H 0.071 0.929 11 C -0.194 4.194 12 N -0.570 5.570 13 Si 0.792 3.208 14 H -0.187 1.187 15 H -0.209 1.209 16 H -0.197 1.197 17 N -0.257 5.257 18 C -0.123 4.123 19 C -0.027 4.027 20 C -0.069 4.069 21 C -0.106 4.106 22 C -0.125 4.125 23 C -0.033 4.033 24 C -0.034 4.034 25 C -0.116 4.116 26 O -0.244 6.244 27 C 0.094 3.906 28 O -0.244 6.244 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.040 0.960 36 H 0.012 0.988 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.128 0.872 42 H 0.087 0.913 43 H 0.173 0.827 44 H 0.168 0.832 45 H 0.159 0.841 46 H 0.123 0.877 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.251 7.300 -25.326 27.337 hybrid contribution 0.217 -0.559 0.439 0.744 sum -7.034 6.741 -24.887 26.726 Atomic orbital electron populations 1.22638 0.93098 1.03189 1.05720 1.21599 0.95818 0.98596 0.87339 0.85418 1.21240 0.80029 0.84699 0.85295 1.90618 1.39614 1.29104 1.86762 1.48132 1.50517 1.29684 1.06007 1.22101 0.94092 0.86575 1.03797 1.18691 0.93638 0.91585 0.82094 1.21710 1.05902 1.18928 1.11156 0.92851 1.25874 1.01828 0.95296 0.96360 1.70056 1.40768 1.27348 1.18868 0.85418 0.78761 0.78299 0.78355 1.18659 1.20859 1.19744 1.61722 1.59813 1.02927 1.01258 1.22427 0.97185 0.90612 1.02076 1.21137 0.98802 0.97349 0.85425 1.19592 0.95000 0.96545 0.95772 1.21106 0.93677 1.00427 0.95409 1.20363 1.01773 0.94896 0.95514 1.20088 0.93221 0.97390 0.92642 1.19946 0.94078 0.93029 0.96345 1.20129 1.01009 0.96822 0.93617 1.87317 1.54687 1.52211 1.30229 1.26085 0.73712 1.03043 0.87733 1.87317 1.32453 1.65381 1.39270 0.89046 0.88489 0.93151 0.90849 0.91797 0.88486 0.95975 0.98842 0.92500 0.91813 0.93366 0.93641 0.87211 0.91303 0.82652 0.83230 0.84114 0.87655 0.82592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.58 8.08 71.98 0.58 -3.00 16 2 C 0.08 2.07 1.93 44.17 0.09 2.15 16 3 H 0.13 2.75 7.19 -2.39 -0.02 2.74 16 4 C 0.50 20.53 6.77 87.66 0.59 21.13 16 5 O -0.58 -30.65 13.91 -3.03 -0.04 -30.69 16 6 N -0.61 -25.50 2.86 -851.14 -2.43 -27.93 16 7 C 0.08 2.13 8.80 127.77 1.12 3.25 16 8 C 0.26 14.24 5.16 85.63 0.44 14.68 16 9 C -0.54 -31.34 9.39 25.60 0.24 -31.10 16 10 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 11 C 0.01 0.29 5.46 84.66 0.46 0.76 16 12 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 13 Si 0.97 45.49 29.54 68.60 2.03 47.51 16 14 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 15 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 16 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 17 N -0.53 -14.37 4.44 -906.07 -4.02 -18.39 16 18 C 0.02 0.73 8.09 127.69 1.03 1.76 16 19 C 0.10 1.76 4.69 85.56 0.40 2.16 16 20 C -0.07 -1.38 4.88 -19.86 -0.10 -1.47 16 21 C -0.09 -1.73 9.69 22.27 0.22 -1.51 16 22 C -0.11 -2.21 10.06 22.35 0.22 -1.99 16 23 C 0.01 0.26 7.15 22.59 0.16 0.42 16 24 C 0.01 0.24 7.15 22.59 0.16 0.40 16 25 C -0.10 -2.06 7.97 22.34 0.18 -1.88 16 26 O -0.33 -7.29 11.40 -76.01 -0.87 -8.16 16 27 C 0.20 3.10 8.89 113.37 1.01 4.11 16 28 O -0.33 -7.22 11.40 -76.10 -0.87 -8.09 16 29 H 0.09 1.56 4.53 -2.39 -0.01 1.55 16 30 H 0.10 1.21 6.91 -2.38 -0.02 1.19 16 31 H 0.05 1.13 6.42 -2.39 -0.02 1.11 16 32 H 0.07 1.66 6.95 -2.39 -0.02 1.65 16 33 H 0.06 1.91 8.07 -2.39 -0.02 1.89 16 34 H 0.10 1.94 6.01 -2.39 -0.01 1.93 16 35 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 36 H -0.01 -0.42 7.42 -2.39 -0.02 -0.43 16 37 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 38 H 0.06 1.83 6.16 -2.38 -0.01 1.82 16 39 H 0.05 1.84 5.82 -2.39 -0.01 1.83 16 40 H 0.05 1.07 6.46 -2.39 -0.02 1.05 16 41 H 0.11 1.48 7.87 -2.39 -0.02 1.46 16 42 H 0.07 0.94 7.00 -2.39 -0.02 0.92 16 43 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 44 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 45 H 0.14 2.61 8.03 -2.91 -0.02 2.59 16 46 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 47 H 0.16 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -82.31 373.75 1.89 -80.42 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.99 Total: 12.30 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 6.81 Total: 9.86 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -6.17 Total: -103.16 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -1.78 Total: -46.94 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -82.31 1.89 -80.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057622343.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.843 kcal (2) G-P(sol) polarization free energy of solvation -82.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds