Wall clock time and date at job start Tue Mar 31 2020 18:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09010 * 109.46940 * 2 1 4 4 C 1.50696 * 109.47139 * 239.99893 * 2 1 3 5 5 O 1.21277 * 120.00209 * 251.11796 * 4 2 1 6 6 N 1.34781 * 119.99997 * 71.11197 * 4 2 1 7 7 C 1.46500 * 119.99894 * 5.02083 * 6 4 2 8 8 C 1.46494 * 120.00410 * 185.01795 * 6 4 2 9 9 C 1.50695 * 109.47117 * 90.00000 * 8 6 4 10 10 H 1.07997 * 120.00158 * 0.02562 * 9 8 6 11 11 C 1.37887 * 119.99955 * 180.02562 * 9 8 6 12 12 N 1.31509 * 120.00066 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99886 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47367 * 89.99795 * 13 11 9 15 15 H 1.48499 * 109.47145 * 210.00201 * 13 11 9 16 16 H 1.48506 * 109.47163 * 330.00033 * 13 11 9 17 17 N 1.46903 * 109.47394 * 119.99821 * 2 1 3 18 18 C 1.46902 * 110.99842 * 58.95146 * 17 2 1 19 19 C 1.46902 * 110.99962 * 295.00080 * 17 2 1 20 20 C 1.50694 * 109.47134 * 189.99556 * 19 17 2 21 21 C 1.38255 * 119.92364 * 90.00114 * 20 19 17 22 22 C 1.38246 * 120.13884 * 179.97438 * 21 20 19 23 23 C 1.38535 * 120.03203 * 0.02562 * 22 21 20 24 24 C 1.39271 * 119.82652 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.93027 * 269.72551 * 20 19 17 26 26 O 1.36507 * 108.64077 * 179.97438 * 24 23 22 27 27 C 1.43986 * 105.48325 * 342.72068 * 26 24 23 28 28 O 1.36503 * 131.53477 * 179.97438 * 23 22 21 29 29 H 1.08996 * 109.47065 * 67.65854 * 1 2 3 30 30 H 1.09000 * 109.46641 * 187.66079 * 1 2 3 31 31 H 1.09000 * 109.46856 * 307.65797 * 1 2 3 32 32 H 1.08999 * 109.47088 * 93.83294 * 7 6 4 33 33 H 1.09000 * 109.47439 * 213.82979 * 7 6 4 34 34 H 1.08994 * 109.47459 * 333.83368 * 7 6 4 35 35 H 1.08997 * 109.47815 * 210.00868 * 8 6 4 36 36 H 1.09001 * 109.47054 * 330.00385 * 8 6 4 37 37 H 0.96994 * 120.00258 * 179.97438 * 12 11 9 38 38 H 1.08999 * 109.46959 * 296.05125 * 18 17 2 39 39 H 1.09004 * 109.46661 * 56.04855 * 18 17 2 40 40 H 1.08995 * 109.46924 * 176.04728 * 18 17 2 41 41 H 1.09007 * 109.46895 * 69.99617 * 19 17 2 42 42 H 1.08998 * 109.47312 * 310.00245 * 19 17 2 43 43 H 1.07995 * 119.93124 * 359.97438 * 21 20 19 44 44 H 1.07998 * 119.98208 * 179.97438 * 22 21 20 45 45 H 1.07995 * 119.98657 * 0.02562 * 25 20 19 46 46 H 1.09001 * 110.57038 * 268.55148 * 27 26 24 47 47 H 1.09006 * 110.57213 * 145.67874 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.5550 -1.8002 -1.1305 6 7 1.9008 -0.1347 -2.4419 7 6 1.3706 1.2266 -2.5523 8 6 2.2879 -0.8699 -3.6484 9 6 1.1033 -1.6437 -4.1669 10 1 0.1566 -1.5926 -3.6497 11 6 1.2281 -2.4171 -5.3016 12 7 2.3811 -2.4798 -5.9311 13 14 -0.2405 -3.3757 -5.9447 14 1 -1.0003 -2.5334 -6.9030 15 1 0.2327 -4.6040 -6.6323 16 1 -1.1215 -3.7519 -4.8099 17 7 2.0198 -0.6925 1.1995 18 6 1.5284 -2.0761 1.2460 19 6 1.6488 0.0392 2.4181 20 6 2.3680 -0.5570 3.6005 21 6 3.6110 -0.0750 3.9666 22 6 4.2744 -0.6183 5.0509 23 6 3.6947 -1.6485 5.7734 24 6 2.4426 -2.1341 5.4046 25 6 1.7809 -1.5809 4.3202 26 8 2.0934 -3.1367 6.2626 27 6 3.3178 -3.5351 6.9070 28 8 4.1298 -2.3465 6.8628 29 1 -0.3633 0.3906 -0.9505 30 1 -0.3632 -1.0185 0.1370 31 1 -0.3633 0.6279 0.8136 32 1 2.1964 1.9376 -2.5724 33 1 0.7907 1.3173 -3.4708 34 1 0.7302 1.4377 -1.6960 35 1 2.6244 -0.1668 -4.4103 36 1 3.0965 -1.5606 -3.4091 37 1 2.4690 -3.0241 -6.7291 38 1 0.4420 -2.0730 1.3348 39 1 1.8168 -2.5950 0.3318 40 1 1.9618 -2.5867 2.1059 41 1 0.5723 -0.0344 2.5726 42 1 1.9298 1.0871 2.3125 43 1 4.0646 0.7278 3.4043 44 1 5.2455 -0.2401 5.3344 45 1 0.8081 -1.9528 4.0345 46 1 3.7945 -4.3457 6.3558 47 1 3.1288 -3.8313 7.9388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057622346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:22 Heat of formation + Delta-G solvation = -40.290094 kcal Electronic energy + Delta-G solvation = -29044.557037 eV Core-core repulsion = 25001.782105 eV Total energy + Delta-G solvation = -4042.774933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.34907 -39.88912 -38.51004 -36.56220 -36.44164 -34.83361 -32.75836 -31.84277 -30.62100 -29.78037 -27.65827 -27.25018 -26.15844 -25.79790 -24.95693 -23.42271 -23.09038 -22.11955 -20.68137 -18.38004 -18.12089 -17.71482 -17.53116 -16.70249 -16.52408 -16.35510 -15.73281 -15.08984 -14.79332 -14.68226 -14.62913 -14.32656 -14.12843 -14.04482 -13.91238 -13.48735 -13.19310 -13.06372 -12.96003 -12.69324 -12.37815 -12.25116 -12.04561 -11.96272 -11.48902 -11.41593 -11.35066 -11.31455 -11.16309 -10.98037 -10.90712 -10.76150 -10.56319 -10.12952 -9.63006 -9.03190 -8.71454 -8.44667 -8.27261 -8.01790 -7.61640 -6.05236 -4.10337 0.93735 1.04618 2.51906 3.20117 3.28399 3.33297 3.34961 3.37312 3.43736 3.82137 4.27749 4.32238 4.41954 4.43667 4.56445 4.68031 4.83234 4.96275 4.98693 5.05311 5.19076 5.19279 5.24642 5.29353 5.37837 5.46813 5.57731 5.65539 5.71978 5.80981 5.84552 5.88427 5.91303 5.94766 6.04045 6.16712 6.20070 6.29542 6.36629 6.60515 6.92089 6.99220 7.15527 7.21682 7.47579 7.56568 7.91655 8.22644 8.43727 8.89791 9.12628 9.54922 11.02721 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019277 B = 0.002440 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.130611 B =11471.820975 C =12006.706642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.063 3.937 3 H 0.100 0.900 4 C 0.516 3.484 5 O -0.526 6.526 6 N -0.601 5.601 7 C 0.075 3.925 8 C 0.245 3.755 9 C -0.526 4.526 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.511 5.511 18 C -0.004 4.004 19 C 0.093 3.907 20 C -0.060 4.060 21 C -0.086 4.086 22 C -0.100 4.100 23 C 0.026 3.974 24 C 0.029 3.971 25 C -0.091 4.091 26 O -0.311 6.311 27 C 0.213 3.787 28 O -0.312 6.312 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.020 0.980 39 H 0.117 0.883 40 H 0.061 0.939 41 H 0.047 0.953 42 H 0.086 0.914 43 H 0.140 0.860 44 H 0.135 0.865 45 H 0.132 0.868 46 H 0.084 0.916 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.776 7.026 22.807 23.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.049 4.049 3 H 0.117 0.883 4 C 0.301 3.699 5 O -0.403 6.403 6 N -0.334 5.334 7 C -0.069 4.069 8 C 0.126 3.874 9 C -0.565 4.565 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.199 1.199 17 N -0.234 5.234 18 C -0.151 4.151 19 C -0.034 4.034 20 C -0.061 4.061 21 C -0.105 4.105 22 C -0.119 4.119 23 C -0.018 4.018 24 C -0.016 4.016 25 C -0.110 4.110 26 O -0.227 6.227 27 C 0.102 3.898 28 O -0.228 6.228 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.135 0.865 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.105 0.895 43 H 0.158 0.842 44 H 0.153 0.847 45 H 0.150 0.850 46 H 0.101 0.899 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.079 6.275 22.851 23.697 hybrid contribution -1.688 -0.725 -0.234 1.852 sum -1.609 5.550 22.617 23.344 Atomic orbital electron populations 1.22501 0.95653 1.03330 1.03173 1.21690 0.94080 0.98742 0.90376 0.88256 1.19990 0.79755 0.86171 0.83936 1.90514 1.43572 1.21010 1.85164 1.48094 1.62693 1.15024 1.07556 1.21813 0.98414 0.83938 1.02746 1.19279 0.96622 0.91663 0.79808 1.21421 0.96922 1.28117 1.10078 0.92553 1.24937 0.96055 0.96493 0.96610 1.69928 1.23705 1.40385 1.19236 0.86515 0.82566 0.79553 0.78884 1.20659 1.21081 1.19938 1.61994 1.59169 1.02796 0.99470 1.23034 0.96643 0.89362 1.06036 1.21061 0.96995 0.97827 0.87547 1.19452 0.95188 0.95508 0.95930 1.20824 0.93855 1.00257 0.95558 1.20074 1.00720 0.96124 0.94957 1.19809 0.93964 0.98434 0.89616 1.19715 0.94251 0.93412 0.94178 1.19965 1.01259 0.97502 0.92265 1.87357 1.31506 1.50881 1.52973 1.25607 0.76358 0.87696 1.00181 1.87349 1.58496 1.33827 1.43156 0.90557 0.91370 0.91985 0.93657 0.90931 0.91822 0.95061 0.93667 0.92698 0.96174 0.86539 0.92036 0.93501 0.89536 0.84204 0.84739 0.84993 0.89871 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.37 8.06 37.16 0.30 -2.07 16 2 C 0.06 0.91 1.91 -68.86 -0.13 0.78 16 3 H 0.10 1.21 7.34 -51.92 -0.38 0.83 16 4 C 0.52 10.40 6.80 -10.99 -0.07 10.33 16 5 O -0.53 -12.80 13.05 5.56 0.07 -12.73 16 6 N -0.60 -12.41 2.86 -182.97 -0.52 -12.93 16 7 C 0.07 1.14 9.81 59.85 0.59 1.72 16 8 C 0.25 6.35 5.22 -5.20 -0.03 6.32 16 9 C -0.53 -14.67 9.39 -34.44 -0.32 -15.00 16 10 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 13 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 17 N -0.51 -7.27 4.61 -237.72 -1.10 -8.37 16 18 C 0.00 -0.06 8.25 60.07 0.50 0.44 16 19 C 0.09 0.99 4.56 -4.98 -0.02 0.97 16 20 C -0.06 -0.66 4.87 -104.62 -0.51 -1.17 16 21 C -0.09 -0.88 9.69 -39.57 -0.38 -1.26 16 22 C -0.10 -1.04 10.06 -39.47 -0.40 -1.44 16 23 C 0.03 0.31 7.15 -39.09 -0.28 0.03 16 24 C 0.03 0.35 7.15 -39.08 -0.28 0.07 16 25 C -0.09 -1.04 7.99 -39.47 -0.32 -1.36 16 26 O -0.31 -3.61 11.40 -45.71 -0.52 -4.13 16 27 C 0.21 1.81 8.89 101.05 0.90 2.71 16 28 O -0.31 -3.49 11.40 -45.70 -0.52 -4.01 16 29 H 0.08 0.98 5.97 -51.93 -0.31 0.67 16 30 H 0.07 0.96 6.08 -51.93 -0.32 0.64 16 31 H 0.06 0.61 7.15 -51.93 -0.37 0.24 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 34 H 0.06 0.77 4.43 -51.93 -0.23 0.54 16 35 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 36 H 0.05 1.33 7.36 -51.93 -0.38 0.95 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.02 0.28 6.34 -51.93 -0.33 -0.05 16 39 H 0.12 2.28 4.99 -51.93 -0.26 2.03 16 40 H 0.06 0.90 6.18 -51.93 -0.32 0.58 16 41 H 0.05 0.46 7.06 -51.92 -0.37 0.09 16 42 H 0.09 0.76 7.94 -51.93 -0.41 0.35 16 43 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 45 H 0.13 1.41 8.04 -52.49 -0.42 0.98 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 374.44 15.07 5.64 5.64 Total: -1.00 -34.15 374.44 -8.39 -42.54 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.60 Total: 0.35 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -0.56 Total: 2.71 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: -0.88 Total: -47.00 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.97 Total: -20.86 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.15 -8.39 -42.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057622346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.254 kcal (2) G-P(sol) polarization free energy of solvation -34.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds