Wall clock time and date at job start Tue Mar 31 2020 18:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09010 * 109.46940 * 2 1 4 4 C 1.50696 * 109.47139 * 239.99893 * 2 1 3 5 5 O 1.21277 * 120.00209 * 251.11796 * 4 2 1 6 6 N 1.34781 * 119.99997 * 71.11197 * 4 2 1 7 7 C 1.46500 * 119.99894 * 5.02083 * 6 4 2 8 8 C 1.46494 * 120.00410 * 185.01795 * 6 4 2 9 9 C 1.50695 * 109.47117 * 90.00000 * 8 6 4 10 10 H 1.07997 * 120.00158 * 0.02562 * 9 8 6 11 11 C 1.37887 * 119.99955 * 180.02562 * 9 8 6 12 12 N 1.31509 * 120.00066 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99886 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47367 * 89.99795 * 13 11 9 15 15 H 1.48499 * 109.47145 * 210.00201 * 13 11 9 16 16 H 1.48506 * 109.47163 * 330.00033 * 13 11 9 17 17 N 1.46903 * 109.47394 * 119.99821 * 2 1 3 18 18 C 1.46902 * 110.99842 * 58.95146 * 17 2 1 19 19 C 1.46902 * 110.99962 * 295.00080 * 17 2 1 20 20 C 1.50694 * 109.47134 * 189.99556 * 19 17 2 21 21 C 1.38255 * 119.92364 * 90.00114 * 20 19 17 22 22 C 1.38246 * 120.13884 * 179.97438 * 21 20 19 23 23 C 1.38535 * 120.03203 * 0.02562 * 22 21 20 24 24 C 1.39271 * 119.82652 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.93027 * 269.72551 * 20 19 17 26 26 O 1.36507 * 108.64077 * 179.97438 * 24 23 22 27 27 C 1.43986 * 105.48325 * 342.72068 * 26 24 23 28 28 O 1.36503 * 131.53477 * 179.97438 * 23 22 21 29 29 H 1.08996 * 109.47065 * 67.65854 * 1 2 3 30 30 H 1.09000 * 109.46641 * 187.66079 * 1 2 3 31 31 H 1.09000 * 109.46856 * 307.65797 * 1 2 3 32 32 H 1.08999 * 109.47088 * 93.83294 * 7 6 4 33 33 H 1.09000 * 109.47439 * 213.82979 * 7 6 4 34 34 H 1.08994 * 109.47459 * 333.83368 * 7 6 4 35 35 H 1.08997 * 109.47815 * 210.00868 * 8 6 4 36 36 H 1.09001 * 109.47054 * 330.00385 * 8 6 4 37 37 H 0.96994 * 120.00258 * 179.97438 * 12 11 9 38 38 H 1.08999 * 109.46959 * 296.05125 * 18 17 2 39 39 H 1.09004 * 109.46661 * 56.04855 * 18 17 2 40 40 H 1.08995 * 109.46924 * 176.04728 * 18 17 2 41 41 H 1.09007 * 109.46895 * 69.99617 * 19 17 2 42 42 H 1.08998 * 109.47312 * 310.00245 * 19 17 2 43 43 H 1.07995 * 119.93124 * 359.97438 * 21 20 19 44 44 H 1.07998 * 119.98208 * 179.97438 * 22 21 20 45 45 H 1.07995 * 119.98657 * 0.02562 * 25 20 19 46 46 H 1.09001 * 110.57038 * 268.55148 * 27 26 24 47 47 H 1.09006 * 110.57213 * 145.67874 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.5550 -1.8002 -1.1305 6 7 1.9008 -0.1347 -2.4419 7 6 1.3706 1.2266 -2.5523 8 6 2.2879 -0.8699 -3.6484 9 6 1.1033 -1.6437 -4.1669 10 1 0.1566 -1.5926 -3.6497 11 6 1.2281 -2.4171 -5.3016 12 7 2.3811 -2.4798 -5.9311 13 14 -0.2405 -3.3757 -5.9447 14 1 -1.0003 -2.5334 -6.9030 15 1 0.2327 -4.6040 -6.6323 16 1 -1.1215 -3.7519 -4.8099 17 7 2.0198 -0.6925 1.1995 18 6 1.5284 -2.0761 1.2460 19 6 1.6488 0.0392 2.4181 20 6 2.3680 -0.5570 3.6005 21 6 3.6110 -0.0750 3.9666 22 6 4.2744 -0.6183 5.0509 23 6 3.6947 -1.6485 5.7734 24 6 2.4426 -2.1341 5.4046 25 6 1.7809 -1.5809 4.3202 26 8 2.0934 -3.1367 6.2626 27 6 3.3178 -3.5351 6.9070 28 8 4.1298 -2.3465 6.8628 29 1 -0.3633 0.3906 -0.9505 30 1 -0.3632 -1.0185 0.1370 31 1 -0.3633 0.6279 0.8136 32 1 2.1964 1.9376 -2.5724 33 1 0.7907 1.3173 -3.4708 34 1 0.7302 1.4377 -1.6960 35 1 2.6244 -0.1668 -4.4103 36 1 3.0965 -1.5606 -3.4091 37 1 2.4690 -3.0241 -6.7291 38 1 0.4420 -2.0730 1.3348 39 1 1.8168 -2.5950 0.3318 40 1 1.9618 -2.5867 2.1059 41 1 0.5723 -0.0344 2.5726 42 1 1.9298 1.0871 2.3125 43 1 4.0646 0.7278 3.4043 44 1 5.2455 -0.2401 5.3344 45 1 0.8081 -1.9528 4.0345 46 1 3.7945 -4.3457 6.3558 47 1 3.1288 -3.8313 7.9388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057622346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:21 Heat of formation + Delta-G solvation = -64.315613 kcal Electronic energy + Delta-G solvation = -29045.598862 eV Core-core repulsion = 25001.782105 eV Total energy + Delta-G solvation = -4043.816757 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.12445 -41.23050 -39.51237 -37.68227 -37.27935 -36.51280 -34.76935 -32.89733 -31.43081 -30.92500 -29.44594 -28.18306 -27.47793 -26.69360 -26.15919 -25.04032 -23.91132 -23.29453 -21.81546 -19.82253 -18.91339 -18.65558 -18.54167 -18.32213 -17.97447 -17.29550 -16.98369 -16.61659 -16.17564 -15.96532 -15.75594 -15.46865 -15.14286 -15.09935 -14.86469 -14.51644 -14.38086 -14.09350 -14.00928 -13.95836 -13.69684 -13.48503 -13.33708 -13.23774 -12.99480 -12.89613 -12.65801 -12.59008 -12.36659 -12.30919 -12.21702 -12.10642 -11.85866 -11.74091 -11.65754 -10.63241 -10.22840 -9.84563 -9.35011 -9.20663 -8.98579 -8.20897 -6.35919 0.10821 0.23678 1.36460 1.39400 1.49326 1.76671 1.89836 2.26811 2.41090 2.51674 2.61822 3.08387 3.21705 3.47792 3.71824 3.78294 3.80145 4.03565 4.04686 4.13614 4.18030 4.24815 4.30110 4.41012 4.43268 4.48868 4.58308 4.68352 4.73650 4.76416 4.78976 4.84047 4.99399 5.04552 5.05275 5.08775 5.23572 5.26373 5.27016 5.33105 5.45274 5.55688 5.60686 5.89076 6.00877 6.08681 6.12046 6.17539 6.73024 6.87260 7.30890 7.58504 8.85899 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019277 B = 0.002440 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.130611 B =11471.820975 C =12006.706642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.077 3.923 3 H 0.136 0.864 4 C 0.502 3.498 5 O -0.580 6.580 6 N -0.610 5.610 7 C 0.070 3.930 8 C 0.260 3.740 9 C -0.538 4.538 10 H 0.054 0.946 11 C 0.006 3.994 12 N -0.930 5.930 13 Si 0.967 3.033 14 H -0.263 1.263 15 H -0.283 1.283 16 H -0.272 1.272 17 N -0.526 5.526 18 C 0.008 3.992 19 C 0.096 3.904 20 C -0.068 4.068 21 C -0.085 4.085 22 C -0.105 4.105 23 C 0.010 3.990 24 C 0.008 3.992 25 C -0.099 4.099 26 O -0.328 6.328 27 C 0.205 3.795 28 O -0.325 6.325 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.021 0.979 36 H -0.004 1.004 37 H 0.266 0.734 38 H 0.032 0.968 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.116 0.884 43 H 0.162 0.838 44 H 0.153 0.847 45 H 0.135 0.865 46 H 0.096 0.904 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.345 9.048 24.184 25.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.035 4.035 3 H 0.153 0.847 4 C 0.291 3.709 5 O -0.460 6.460 6 N -0.342 5.342 7 C -0.072 4.072 8 C 0.138 3.862 9 C -0.577 4.577 10 H 0.073 0.927 11 C -0.193 4.193 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.188 1.188 15 H -0.209 1.209 16 H -0.197 1.197 17 N -0.249 5.249 18 C -0.140 4.140 19 C -0.030 4.030 20 C -0.068 4.068 21 C -0.103 4.103 22 C -0.123 4.123 23 C -0.034 4.034 24 C -0.036 4.036 25 C -0.119 4.119 26 O -0.245 6.245 27 C 0.094 3.906 28 O -0.242 6.242 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.121 0.879 35 H 0.039 0.961 36 H 0.014 0.986 37 H 0.075 0.925 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.134 0.866 43 H 0.180 0.820 44 H 0.171 0.829 45 H 0.153 0.847 46 H 0.113 0.887 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.510 8.348 24.250 25.691 hybrid contribution -1.120 -1.370 -0.600 1.869 sum -2.630 6.977 23.651 24.798 Atomic orbital electron populations 1.22488 0.93790 1.03075 1.04757 1.21650 0.95225 0.99172 0.87428 0.84671 1.21174 0.78654 0.85818 0.85286 1.90516 1.45758 1.23577 1.86154 1.48113 1.62921 1.16811 1.06307 1.22111 0.99739 0.81179 1.04171 1.18707 0.94742 0.90971 0.81743 1.21693 0.97250 1.28539 1.10230 0.92728 1.25866 0.99001 0.97472 0.96923 1.70055 1.25859 1.41261 1.19764 0.85431 0.78948 0.78121 0.78402 1.18790 1.20871 1.19674 1.61907 1.59866 1.02337 1.00822 1.22742 0.97317 0.90358 1.03589 1.21175 0.97885 0.98627 0.85310 1.19593 0.95648 0.95518 0.96086 1.21133 0.93460 1.00414 0.95304 1.20396 1.01500 0.95619 0.94790 1.20116 0.94180 0.99051 0.90082 1.19965 0.94825 0.94014 0.94805 1.20130 1.01548 0.97817 0.92371 1.87315 1.33038 1.50969 1.53180 1.26056 0.75355 0.87052 1.02111 1.87313 1.59111 1.34658 1.43072 0.90640 0.93347 0.87873 0.91321 0.91733 0.87939 0.96110 0.98573 0.92475 0.94970 0.91081 0.91858 0.92025 0.86586 0.82020 0.82889 0.84725 0.88679 0.82039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.98 8.06 71.98 0.58 -3.40 16 2 C 0.08 2.02 1.91 44.17 0.08 2.11 16 3 H 0.14 2.63 7.34 -2.38 -0.02 2.61 16 4 C 0.50 20.33 6.80 87.66 0.60 20.92 16 5 O -0.58 -29.65 13.05 -3.02 -0.04 -29.69 16 6 N -0.61 -25.25 2.86 -851.17 -2.43 -27.69 16 7 C 0.07 1.96 9.81 127.77 1.25 3.22 16 8 C 0.26 14.03 5.22 85.63 0.45 14.47 16 9 C -0.54 -30.78 9.39 25.60 0.24 -30.54 16 10 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 11 C 0.01 0.36 5.46 84.66 0.46 0.82 16 12 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16 13 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 14 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 15 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 16 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 17 N -0.53 -13.90 4.61 -906.01 -4.18 -18.08 16 18 C 0.01 0.24 8.25 127.69 1.05 1.29 16 19 C 0.10 1.69 4.56 85.55 0.39 2.09 16 20 C -0.07 -1.34 4.87 -19.86 -0.10 -1.43 16 21 C -0.08 -1.52 9.69 22.28 0.22 -1.30 16 22 C -0.10 -2.01 10.06 22.34 0.22 -1.78 16 23 C 0.01 0.23 7.15 22.59 0.16 0.39 16 24 C 0.01 0.19 7.15 22.59 0.16 0.35 16 25 C -0.10 -2.20 7.99 22.34 0.18 -2.02 16 26 O -0.33 -7.54 11.40 -76.13 -0.87 -8.41 16 27 C 0.20 3.32 8.89 113.37 1.01 4.33 16 28 O -0.32 -7.05 11.40 -76.09 -0.87 -7.92 16 29 H 0.07 1.67 5.97 -2.39 -0.01 1.66 16 30 H 0.05 1.26 6.08 -2.39 -0.01 1.25 16 31 H 0.10 1.45 7.15 -2.39 -0.02 1.43 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.06 1.92 8.10 -2.39 -0.02 1.90 16 34 H 0.10 2.06 4.43 -2.39 -0.01 2.05 16 35 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 36 H 0.00 -0.24 7.36 -2.39 -0.02 -0.26 16 37 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 38 H 0.03 0.89 6.34 -2.39 -0.02 0.87 16 39 H 0.07 2.93 4.99 -2.39 -0.01 2.92 16 40 H 0.06 1.88 6.18 -2.39 -0.01 1.86 16 41 H 0.06 0.94 7.06 -2.38 -0.02 0.92 16 42 H 0.12 1.40 7.94 -2.39 -0.02 1.38 16 43 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 44 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 45 H 0.13 2.77 8.04 -2.91 -0.02 2.74 16 46 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.16 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -79.71 374.44 1.88 -77.83 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.99 Total: 13.88 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 6.96 Total: 9.52 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -6.32 Total: -102.01 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -1.78 Total: -46.02 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -79.71 1.88 -77.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057622346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.519 kcal (2) G-P(sol) polarization free energy of solvation -79.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds