Wall clock time and date at job start Tue Mar 31 2020 18:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47299 * 2 1 4 4 C 1.50697 * 109.47503 * 120.00563 * 2 1 3 5 5 O 1.21279 * 120.00006 * 106.21569 * 4 2 1 6 6 N 1.34779 * 119.99916 * 286.22234 * 4 2 1 7 7 C 1.46497 * 119.99799 * 5.05826 * 6 4 2 8 8 C 1.46504 * 119.99883 * 185.05693 * 6 4 2 9 9 C 1.53001 * 109.47091 * 270.00118 * 8 6 4 10 10 H 1.08995 * 109.70171 * 60.58400 * 9 8 6 11 11 C 1.53471 * 109.73785 * 181.19005 * 9 8 6 12 12 O 1.43180 * 108.23072 * 179.46499 * 11 9 8 13 13 C 1.36110 * 116.69582 * 313.75943 * 12 11 9 14 14 C 1.38702 * 119.39439 * 197.18428 * 13 12 11 15 15 C 1.38191 * 120.06669 * 180.14510 * 14 13 12 16 16 C 1.38254 * 120.11416 * 359.97438 * 15 14 13 17 17 C 1.38194 * 120.11271 * 359.95703 * 16 15 14 18 18 C 1.38704 * 120.06806 * 359.97438 * 17 16 15 19 19 O 1.36104 * 119.39707 * 180.17211 * 18 17 16 20 20 N 1.46507 * 109.46876 * 240.00644 * 2 1 3 21 21 C 1.46500 * 119.99873 * 299.99956 * 20 2 1 22 22 C 1.36932 * 120.00251 * 120.00085 * 20 2 1 23 23 H 1.08005 * 119.99961 * 28.08410 * 22 20 2 24 24 C 1.38817 * 119.99800 * 208.08971 * 22 20 2 25 25 N 1.31615 * 119.99837 * 7.94170 * 24 22 20 26 26 Si 1.86799 * 119.99647 * 187.94132 * 24 22 20 27 27 H 1.48497 * 109.47346 * 59.99919 * 26 24 22 28 28 H 1.48503 * 109.46948 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47222 * 299.99739 * 26 24 22 30 30 H 1.09004 * 109.46700 * 287.73683 * 1 2 3 31 31 H 1.09003 * 109.47243 * 47.73207 * 1 2 3 32 32 H 1.09001 * 109.47300 * 167.73764 * 1 2 3 33 33 H 1.08998 * 109.47093 * 267.12190 * 7 6 4 34 34 H 1.09000 * 109.47480 * 27.12671 * 7 6 4 35 35 H 1.09007 * 109.47113 * 147.12163 * 7 6 4 36 36 H 1.09001 * 109.46829 * 150.00066 * 8 6 4 37 37 H 1.09000 * 109.46708 * 30.00252 * 8 6 4 38 38 H 1.08999 * 109.70910 * 299.14822 * 11 9 8 39 39 H 1.08996 * 109.71173 * 59.73722 * 11 9 8 40 40 H 1.07997 * 119.96245 * 0.17067 * 14 13 12 41 41 H 1.08003 * 119.94388 * 180.02562 * 15 14 13 42 42 H 1.08000 * 119.94625 * 179.97438 * 16 15 14 43 43 H 1.08006 * 119.96739 * 180.02562 * 17 16 15 44 44 H 1.08997 * 109.47484 * 94.81140 * 21 20 2 45 45 H 1.09002 * 109.47426 * 214.81779 * 21 20 2 46 46 H 1.09007 * 109.47244 * 334.81433 * 21 20 2 47 47 H 0.97002 * 119.99448 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.5111 -1.8208 1.1364 6 7 1.9497 -0.1120 2.4351 7 6 1.2721 1.1802 2.5660 8 6 2.5373 -0.7539 3.6137 9 6 1.4945 -1.6568 4.2759 10 1 1.1786 -2.4289 3.5745 11 6 2.0946 -2.3094 5.5286 12 8 1.0903 -3.1352 6.1282 13 6 -0.1497 -2.5903 6.2618 14 6 -1.0578 -3.1706 7.1350 15 6 -2.3217 -2.6306 7.2793 16 6 -2.6843 -1.5105 6.5544 17 6 -1.7839 -0.9267 5.6837 18 6 -0.5133 -1.4628 5.5352 19 8 0.3638 -0.8747 4.6765 20 7 2.0183 -0.6905 -1.1963 21 6 1.6643 -2.0931 -1.4283 22 6 2.8055 -0.0250 -2.0977 23 1 3.4319 0.7910 -1.7685 24 6 2.7985 -0.3991 -3.4344 25 7 1.9250 -1.2843 -3.8654 26 14 4.0286 0.3539 -4.6215 27 1 5.4081 0.0418 -4.1689 28 1 3.8145 -0.2085 -5.9791 29 1 3.8416 1.8266 -4.6601 30 1 -0.3633 0.3131 0.9789 31 1 -0.3634 0.6912 -0.7605 32 1 -0.3634 -1.0042 -0.2183 33 1 2.0016 1.9843 2.4699 34 1 0.5195 1.2769 1.7835 35 1 0.7909 1.2409 3.5423 36 1 2.8581 0.0105 4.3216 37 1 3.3965 -1.3523 3.3110 38 1 2.9538 -2.9194 5.2495 39 1 2.4051 -1.5373 6.2325 40 1 -0.7767 -4.0450 7.7030 41 1 -3.0270 -3.0837 7.9601 42 1 -3.6729 -1.0910 6.6689 43 1 -2.0695 -0.0515 5.1189 44 1 0.7856 -2.1446 -2.0711 45 1 2.4980 -2.6032 -1.9108 46 1 1.4460 -2.5751 -0.4753 47 1 1.9204 -1.5460 -4.7995 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972172.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:56 Heat of formation + Delta-G solvation = -37.179918 kcal Electronic energy + Delta-G solvation = -29801.864039 eV Core-core repulsion = 25759.223974 eV Total energy + Delta-G solvation = -4042.640065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.46015 -39.59762 -37.92829 -37.40683 -35.67805 -35.01010 -32.62716 -31.60930 -30.84108 -29.42906 -28.84578 -26.95764 -26.16620 -25.72177 -24.15667 -23.44975 -22.86957 -21.20776 -20.75383 -19.14659 -18.36224 -17.67560 -17.06813 -16.96021 -16.04732 -15.90587 -15.64768 -15.21110 -14.94939 -14.82424 -14.60921 -14.46986 -14.06167 -13.87916 -13.85425 -13.43809 -13.09767 -12.89552 -12.56939 -12.45344 -12.21729 -12.11268 -12.06313 -11.89642 -11.44852 -11.36353 -11.16221 -10.97025 -10.82389 -10.73989 -10.67057 -10.51629 -10.23460 -10.07727 -9.85956 -8.96528 -8.84404 -8.49744 -8.43173 -8.22526 -6.66456 -5.68490 -3.22220 1.09188 1.12229 2.79132 2.99602 3.20834 3.30372 3.40121 3.44811 3.45993 3.53419 4.08042 4.46144 4.50552 4.60220 4.62180 4.78799 4.90219 4.96653 5.07610 5.19661 5.22044 5.26335 5.36266 5.41673 5.52594 5.54847 5.58997 5.69262 5.71992 5.85463 5.93552 5.96016 6.00250 6.05077 6.25292 6.34772 6.43082 6.52413 6.69770 6.79120 6.88014 7.12370 7.25998 7.57119 7.73127 7.81593 7.90472 8.42642 8.78111 9.26412 9.86255 10.38183 11.33983 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023318 B = 0.002690 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.514831 B =10408.055068 C =10630.552994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.162 3.838 3 H 0.085 0.915 4 C 0.497 3.503 5 O -0.527 6.527 6 N -0.621 5.621 7 C 0.072 3.928 8 C 0.129 3.871 9 C 0.037 3.963 10 H 0.091 0.909 11 C 0.029 3.971 12 O -0.306 6.306 13 C 0.047 3.953 14 C -0.116 4.116 15 C -0.121 4.121 16 C -0.117 4.117 17 C -0.116 4.116 18 C 0.057 3.943 19 O -0.297 6.297 20 N -0.573 5.573 21 C 0.164 3.836 22 C -0.263 4.263 23 H 0.064 0.936 24 C 0.010 3.990 25 N -0.901 5.901 26 Si 0.907 3.093 27 H -0.284 1.284 28 H -0.290 1.290 29 H -0.282 1.282 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.124 0.876 39 H 0.078 0.922 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.026 0.974 45 H 0.035 0.965 46 H 0.017 0.983 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.436 2.133 23.579 24.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.049 3.951 3 H 0.103 0.897 4 C 0.284 3.716 5 O -0.401 6.401 6 N -0.357 5.357 7 C -0.071 4.071 8 C 0.005 3.995 9 C -0.021 4.021 10 H 0.109 0.891 11 C -0.047 4.047 12 O -0.221 6.221 13 C 0.002 3.998 14 C -0.135 4.135 15 C -0.140 4.140 16 C -0.136 4.136 17 C -0.134 4.134 18 C 0.012 3.988 19 O -0.211 6.211 20 N -0.294 5.294 21 C 0.020 3.980 22 C -0.393 4.393 23 H 0.082 0.918 24 C -0.190 4.190 25 N -0.544 5.544 26 Si 0.737 3.263 27 H -0.210 1.210 28 H -0.215 1.215 29 H -0.208 1.208 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.142 0.858 39 H 0.096 0.904 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.152 0.848 44 H 0.044 0.956 45 H 0.054 0.946 46 H 0.035 0.965 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.112 1.431 23.221 24.055 hybrid contribution 0.814 0.350 -0.699 1.128 sum -5.298 1.781 22.523 23.206 Atomic orbital electron populations 1.22376 0.96284 1.02896 1.00369 1.20225 0.93401 0.95805 0.85716 0.89676 1.22979 0.77428 0.86645 0.84514 1.90598 1.44365 1.19607 1.85547 1.48083 1.58316 1.22295 1.07051 1.22033 0.97438 0.84044 1.03562 1.21287 0.93976 0.96431 0.87820 1.23798 0.87104 0.95586 0.95661 0.89070 1.23615 0.90624 0.96090 0.94337 1.86312 1.16951 1.40863 1.77944 1.18982 0.86597 0.95799 0.98419 1.20436 0.93155 1.01593 0.98269 1.20888 0.95613 0.96793 1.00663 1.20914 0.99382 0.96411 0.96848 1.20477 0.90006 1.01942 1.00998 1.19011 0.91537 0.95100 0.93176 1.86342 1.34103 1.40774 1.59926 1.43645 1.57784 1.08428 1.19498 1.20818 0.99117 0.82846 0.95203 1.19112 1.17287 1.15329 0.87580 0.91824 1.25129 0.98006 0.99020 0.96799 1.70057 1.35417 1.34180 1.14795 0.86310 0.81000 0.78780 0.80229 1.21020 1.21550 1.20825 0.93129 0.91641 0.92397 0.93141 0.89577 0.91122 0.89902 0.87789 0.85806 0.90427 0.85015 0.85249 0.85193 0.84815 0.95581 0.94647 0.96469 0.93637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 8.89 37.16 0.33 -2.58 16 2 C 0.16 3.36 2.31 -69.08 -0.16 3.20 16 3 H 0.09 1.67 7.47 -51.93 -0.39 1.28 16 4 C 0.50 9.69 6.84 -10.99 -0.08 9.61 16 5 O -0.53 -12.11 13.70 5.56 0.08 -12.03 16 6 N -0.62 -9.16 2.80 -181.57 -0.51 -9.66 16 7 C 0.07 0.84 9.60 59.85 0.57 1.41 16 8 C 0.13 1.57 5.13 -4.04 -0.02 1.55 16 9 C 0.04 0.45 3.30 -26.49 -0.09 0.37 16 10 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 11 C 0.03 0.30 6.56 37.40 0.25 0.55 16 12 O -0.31 -3.84 10.42 -32.87 -0.34 -4.18 16 13 C 0.05 0.58 6.49 -39.14 -0.25 0.33 16 14 C -0.12 -1.20 9.96 -39.43 -0.39 -1.59 16 15 C -0.12 -1.05 10.04 -39.59 -0.40 -1.45 16 16 C -0.12 -1.03 10.04 -39.59 -0.40 -1.43 16 17 C -0.12 -1.23 9.96 -39.43 -0.39 -1.62 16 18 C 0.06 0.72 6.49 -39.14 -0.25 0.46 16 19 O -0.30 -3.83 8.67 -32.85 -0.28 -4.11 16 20 N -0.57 -15.00 2.67 -174.81 -0.47 -15.46 16 21 C 0.16 4.42 7.29 59.85 0.44 4.86 16 22 C -0.26 -7.40 9.53 -15.06 -0.14 -7.54 16 23 H 0.06 1.73 7.84 -52.48 -0.41 1.31 16 24 C 0.01 0.28 5.20 -17.43 -0.09 0.19 16 25 N -0.90 -26.77 10.76 55.49 0.60 -26.17 16 26 Si 0.91 22.07 29.56 -169.99 -5.02 17.05 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 30 H 0.05 0.75 5.56 -51.93 -0.29 0.46 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.16 7.29 -51.93 -0.38 0.78 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 1.02 4.22 -51.93 -0.22 0.81 16 35 H 0.07 0.73 7.02 -51.93 -0.36 0.36 16 36 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 37 H 0.10 1.33 7.50 -51.93 -0.39 0.94 16 38 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 41 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 42 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 44 H 0.03 0.74 7.27 -51.93 -0.38 0.36 16 45 H 0.03 1.03 7.53 -51.93 -0.39 0.64 16 46 H 0.02 0.44 5.99 -51.92 -0.31 0.12 16 47 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 374.54 15.07 5.64 5.64 Total: -1.00 -34.43 374.54 -8.27 -42.70 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.88 Total: -0.09 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -1.08 Total: 6.32 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -0.38 Total: -51.30 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.55 Total: -20.33 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.43 -8.27 -42.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972172.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.520 kcal (2) G-P(sol) polarization free energy of solvation -34.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds