Wall clock time and date at job start Tue Mar 31 2020 18:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47299 * 2 1 4 4 C 1.50697 * 109.47503 * 120.00563 * 2 1 3 5 5 O 1.21279 * 120.00006 * 106.21569 * 4 2 1 6 6 N 1.34779 * 119.99916 * 286.22234 * 4 2 1 7 7 C 1.46497 * 119.99799 * 5.05826 * 6 4 2 8 8 C 1.46504 * 119.99883 * 185.05693 * 6 4 2 9 9 C 1.53001 * 109.47091 * 270.00118 * 8 6 4 10 10 H 1.08995 * 109.70171 * 60.58400 * 9 8 6 11 11 C 1.53471 * 109.73785 * 181.19005 * 9 8 6 12 12 O 1.43180 * 108.23072 * 179.46499 * 11 9 8 13 13 C 1.36110 * 116.69582 * 313.75943 * 12 11 9 14 14 C 1.38702 * 119.39439 * 197.18428 * 13 12 11 15 15 C 1.38191 * 120.06669 * 180.14510 * 14 13 12 16 16 C 1.38254 * 120.11416 * 359.97438 * 15 14 13 17 17 C 1.38194 * 120.11271 * 359.95703 * 16 15 14 18 18 C 1.38704 * 120.06806 * 359.97438 * 17 16 15 19 19 O 1.36104 * 119.39707 * 180.17211 * 18 17 16 20 20 N 1.46507 * 109.46876 * 240.00644 * 2 1 3 21 21 C 1.46500 * 119.99873 * 299.99956 * 20 2 1 22 22 C 1.36932 * 120.00251 * 120.00085 * 20 2 1 23 23 H 1.08005 * 119.99961 * 28.08410 * 22 20 2 24 24 C 1.38817 * 119.99800 * 208.08971 * 22 20 2 25 25 N 1.31615 * 119.99837 * 7.94170 * 24 22 20 26 26 Si 1.86799 * 119.99647 * 187.94132 * 24 22 20 27 27 H 1.48497 * 109.47346 * 59.99919 * 26 24 22 28 28 H 1.48503 * 109.46948 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47222 * 299.99739 * 26 24 22 30 30 H 1.09004 * 109.46700 * 287.73683 * 1 2 3 31 31 H 1.09003 * 109.47243 * 47.73207 * 1 2 3 32 32 H 1.09001 * 109.47300 * 167.73764 * 1 2 3 33 33 H 1.08998 * 109.47093 * 267.12190 * 7 6 4 34 34 H 1.09000 * 109.47480 * 27.12671 * 7 6 4 35 35 H 1.09007 * 109.47113 * 147.12163 * 7 6 4 36 36 H 1.09001 * 109.46829 * 150.00066 * 8 6 4 37 37 H 1.09000 * 109.46708 * 30.00252 * 8 6 4 38 38 H 1.08999 * 109.70910 * 299.14822 * 11 9 8 39 39 H 1.08996 * 109.71173 * 59.73722 * 11 9 8 40 40 H 1.07997 * 119.96245 * 0.17067 * 14 13 12 41 41 H 1.08003 * 119.94388 * 180.02562 * 15 14 13 42 42 H 1.08000 * 119.94625 * 179.97438 * 16 15 14 43 43 H 1.08006 * 119.96739 * 180.02562 * 17 16 15 44 44 H 1.08997 * 109.47484 * 94.81140 * 21 20 2 45 45 H 1.09002 * 109.47426 * 214.81779 * 21 20 2 46 46 H 1.09007 * 109.47244 * 334.81433 * 21 20 2 47 47 H 0.97002 * 119.99448 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.5111 -1.8208 1.1364 6 7 1.9497 -0.1120 2.4351 7 6 1.2721 1.1802 2.5660 8 6 2.5373 -0.7539 3.6137 9 6 1.4945 -1.6568 4.2759 10 1 1.1786 -2.4289 3.5745 11 6 2.0946 -2.3094 5.5286 12 8 1.0903 -3.1352 6.1282 13 6 -0.1497 -2.5903 6.2618 14 6 -1.0578 -3.1706 7.1350 15 6 -2.3217 -2.6306 7.2793 16 6 -2.6843 -1.5105 6.5544 17 6 -1.7839 -0.9267 5.6837 18 6 -0.5133 -1.4628 5.5352 19 8 0.3638 -0.8747 4.6765 20 7 2.0183 -0.6905 -1.1963 21 6 1.6643 -2.0931 -1.4283 22 6 2.8055 -0.0250 -2.0977 23 1 3.4319 0.7910 -1.7685 24 6 2.7985 -0.3991 -3.4344 25 7 1.9250 -1.2843 -3.8654 26 14 4.0286 0.3539 -4.6215 27 1 5.4081 0.0418 -4.1689 28 1 3.8145 -0.2085 -5.9791 29 1 3.8416 1.8266 -4.6601 30 1 -0.3633 0.3131 0.9789 31 1 -0.3634 0.6912 -0.7605 32 1 -0.3634 -1.0042 -0.2183 33 1 2.0016 1.9843 2.4699 34 1 0.5195 1.2769 1.7835 35 1 0.7909 1.2409 3.5423 36 1 2.8581 0.0105 4.3216 37 1 3.3965 -1.3523 3.3110 38 1 2.9538 -2.9194 5.2495 39 1 2.4051 -1.5373 6.2325 40 1 -0.7767 -4.0450 7.7030 41 1 -3.0270 -3.0837 7.9601 42 1 -3.6729 -1.0910 6.6689 43 1 -2.0695 -0.0515 5.1189 44 1 0.7856 -2.1446 -2.0711 45 1 2.4980 -2.6032 -1.9108 46 1 1.4460 -2.5751 -0.4753 47 1 1.9204 -1.5460 -4.7995 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972172.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:55 Heat of formation + Delta-G solvation = -58.789081 kcal Electronic energy + Delta-G solvation = -29802.801083 eV Core-core repulsion = 25759.223974 eV Total energy + Delta-G solvation = -4043.577109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.32999 -41.03535 -38.77667 -38.31328 -37.37260 -36.48651 -34.20407 -32.97730 -31.61128 -31.03744 -29.87384 -28.08902 -27.92281 -27.16491 -25.58915 -24.75924 -23.70771 -22.76454 -21.68815 -20.30691 -19.53809 -18.95014 -18.53407 -17.94173 -17.61420 -17.19781 -16.67122 -16.61813 -16.08028 -15.99424 -15.69921 -15.59174 -15.40803 -14.90762 -14.83342 -14.82691 -14.63534 -14.36249 -13.97795 -13.83393 -13.46020 -13.14166 -13.11969 -12.88714 -12.86148 -12.74602 -12.66643 -12.42289 -12.36310 -12.17999 -12.14446 -12.07081 -12.01995 -11.86425 -11.47752 -10.77323 -10.48374 -9.65908 -9.62177 -9.06295 -8.75436 -7.82609 -5.39898 0.32318 0.34115 1.45238 1.49480 1.55487 1.69432 1.86086 2.12460 2.21948 2.50695 2.76454 3.19764 3.30259 3.59091 3.61637 3.67411 3.70916 3.84257 4.12796 4.18152 4.24412 4.30527 4.33510 4.36783 4.40769 4.46083 4.47816 4.58017 4.64103 4.73499 4.82252 4.91072 4.92926 4.96147 5.09423 5.21571 5.23980 5.34452 5.34924 5.53309 5.57286 5.61037 5.66040 5.73696 5.91180 6.28191 6.39215 6.42098 7.10531 7.29164 7.80216 8.28643 9.19153 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023318 B = 0.002690 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.514831 B =10408.055068 C =10630.552994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.154 3.846 3 H 0.100 0.900 4 C 0.497 3.503 5 O -0.572 6.572 6 N -0.612 5.612 7 C 0.067 3.933 8 C 0.130 3.870 9 C 0.043 3.957 10 H 0.051 0.949 11 C 0.032 3.968 12 O -0.324 6.324 13 C 0.022 3.978 14 C -0.127 4.127 15 C -0.115 4.115 16 C -0.114 4.114 17 C -0.125 4.125 18 C 0.029 3.971 19 O -0.303 6.303 20 N -0.593 5.593 21 C 0.192 3.808 22 C -0.275 4.275 23 H 0.072 0.928 24 C -0.048 4.048 25 N -0.935 5.935 26 Si 0.975 3.025 27 H -0.282 1.282 28 H -0.294 1.294 29 H -0.266 1.266 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.121 0.879 37 H 0.096 0.904 38 H 0.138 0.862 39 H 0.099 0.901 40 H 0.143 0.857 41 H 0.161 0.839 42 H 0.161 0.839 43 H 0.144 0.856 44 H 0.004 0.996 45 H 0.000 1.000 46 H 0.023 0.977 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.015 4.210 26.049 27.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.043 3.957 3 H 0.117 0.883 4 C 0.285 3.715 5 O -0.450 6.450 6 N -0.345 5.345 7 C -0.074 4.074 8 C 0.006 3.994 9 C -0.015 4.015 10 H 0.069 0.931 11 C -0.044 4.044 12 O -0.239 6.239 13 C -0.023 4.023 14 C -0.146 4.146 15 C -0.133 4.133 16 C -0.132 4.132 17 C -0.144 4.144 18 C -0.016 4.016 19 O -0.219 6.219 20 N -0.314 5.314 21 C 0.047 3.953 22 C -0.404 4.404 23 H 0.090 0.910 24 C -0.243 4.243 25 N -0.581 5.581 26 Si 0.802 3.198 27 H -0.208 1.208 28 H -0.220 1.220 29 H -0.191 1.191 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.139 0.861 37 H 0.114 0.886 38 H 0.156 0.844 39 H 0.117 0.883 40 H 0.161 0.839 41 H 0.179 0.821 42 H 0.178 0.822 43 H 0.162 0.838 44 H 0.022 0.978 45 H 0.019 0.981 46 H 0.042 0.958 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.713 3.573 25.775 26.874 hybrid contribution 0.895 -0.268 -1.275 1.581 sum -5.818 3.305 24.500 25.397 Atomic orbital electron populations 1.22232 0.94313 1.01540 1.02542 1.20486 0.94819 0.96040 0.84335 0.88262 1.22446 0.77293 0.86068 0.85721 1.90580 1.46629 1.21390 1.86439 1.47963 1.57294 1.22947 1.06321 1.22258 0.97872 0.82755 1.04562 1.21474 0.93425 0.97293 0.87188 1.23552 0.87274 0.94726 0.95952 0.93086 1.23747 0.90382 0.96714 0.93569 1.86270 1.17528 1.41836 1.78233 1.19319 0.86967 0.96453 0.99538 1.20771 0.93649 1.02040 0.98119 1.21315 0.95297 0.96328 1.00363 1.21330 1.00237 0.96015 0.95606 1.20783 0.89624 1.02422 1.01549 1.19328 0.92363 0.96005 0.93925 1.86287 1.34387 1.40810 1.60372 1.43789 1.58385 1.08128 1.21133 1.20379 0.96600 0.83906 0.94461 1.19507 1.17570 1.15175 0.88178 0.91031 1.25978 0.99992 0.99772 0.98596 1.70234 1.37266 1.35800 1.14752 0.85237 0.78427 0.78610 0.77479 1.20812 1.21969 1.19119 0.89307 0.91768 0.94791 0.90999 0.89847 0.89169 0.86112 0.88619 0.84376 0.88289 0.83916 0.82120 0.82161 0.83820 0.97761 0.98109 0.95824 0.94169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.29 8.89 71.98 0.64 -4.65 16 2 C 0.15 6.38 2.31 44.24 0.10 6.48 16 3 H 0.10 3.77 7.47 -2.39 -0.02 3.75 16 4 C 0.50 19.35 6.84 87.66 0.60 19.95 16 5 O -0.57 -27.06 13.70 -3.03 -0.04 -27.10 16 6 N -0.61 -17.08 2.80 -846.75 -2.37 -19.45 16 7 C 0.07 1.35 9.60 127.77 1.23 2.58 16 8 C 0.13 2.96 5.13 86.38 0.44 3.40 16 9 C 0.04 1.06 3.30 30.75 0.10 1.16 16 10 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 11 C 0.03 0.62 6.56 72.14 0.47 1.09 16 12 O -0.32 -8.06 10.42 -82.58 -0.86 -8.92 16 13 C 0.02 0.53 6.49 22.56 0.15 0.68 16 14 C -0.13 -2.45 9.96 22.37 0.22 -2.23 16 15 C -0.12 -1.68 10.04 22.26 0.22 -1.45 16 16 C -0.11 -1.68 10.04 22.26 0.22 -1.45 16 17 C -0.13 -2.43 9.96 22.37 0.22 -2.21 16 18 C 0.03 0.69 6.49 22.56 0.15 0.84 16 19 O -0.30 -7.49 8.67 -82.52 -0.72 -8.21 16 20 N -0.59 -31.71 2.67 -706.96 -1.89 -33.60 16 21 C 0.19 10.82 7.29 127.77 0.93 11.75 16 22 C -0.27 -15.56 9.53 84.04 0.80 -14.76 16 23 H 0.07 3.85 7.84 -2.91 -0.02 3.83 16 24 C -0.05 -2.75 5.20 84.86 0.44 -2.31 16 25 N -0.94 -57.35 10.76 21.65 0.23 -57.12 16 26 Si 0.98 45.80 29.56 68.60 2.03 47.83 16 27 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 28 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 29 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 30 H 0.09 2.47 5.56 -2.38 -0.01 2.45 16 31 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.03 1.37 7.29 -2.39 -0.02 1.35 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.73 4.22 -2.39 -0.01 1.72 16 35 H 0.09 1.54 7.02 -2.38 -0.02 1.52 16 36 H 0.12 1.88 8.07 -2.39 -0.02 1.86 16 37 H 0.10 2.39 7.50 -2.39 -0.02 2.38 16 38 H 0.14 2.20 8.14 -2.39 -0.02 2.19 16 39 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 41 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 42 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 43 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 44 H 0.00 0.25 7.27 -2.39 -0.02 0.23 16 45 H 0.00 0.00 7.53 -2.39 -0.02 -0.01 16 46 H 0.02 1.27 5.99 -2.38 -0.01 1.26 16 47 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -78.15 374.54 4.30 -73.84 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.97 Total: 13.86 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 6.95 Total: 18.87 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -4.03 Total: -110.18 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -1.62 Total: -44.23 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -78.15 4.30 -73.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972172.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.053 kcal (2) G-P(sol) polarization free energy of solvation -78.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds