Wall clock time and date at job start Tue Mar 31 2020 18:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47370 * 2 1 4 4 O 1.45202 * 109.47223 * 120.00504 * 2 1 3 5 5 C 1.34746 * 116.99893 * 89.99653 * 4 2 1 6 6 O 1.21505 * 120.00215 * 0.02562 * 5 4 2 7 7 C 1.47463 * 119.99915 * 179.97438 * 5 4 2 8 8 C 1.39803 * 120.08199 * 179.97438 * 7 5 4 9 9 C 1.37649 * 119.92574 * 180.02562 * 8 7 5 10 10 C 1.39151 * 120.07163 * 0.02562 * 9 8 7 11 11 N 1.39420 * 119.91655 * 179.97438 * 10 9 8 12 12 C 1.34769 * 119.99763 * 147.33356 * 11 10 9 13 13 O 1.21280 * 120.00467 * 354.79713 * 12 11 10 14 14 C 1.50700 * 119.99880 * 174.78724 * 12 11 10 15 15 H 1.08999 * 109.47592 * 300.00433 * 14 12 11 16 16 C 1.53005 * 109.46973 * 60.00655 * 14 12 11 17 17 N 1.46505 * 109.47227 * 180.02562 * 14 12 11 18 18 C 1.46504 * 119.99918 * 300.00091 * 17 14 12 19 19 C 1.36935 * 120.00110 * 120.00351 * 17 14 12 20 20 H 1.07999 * 120.00179 * 22.39644 * 19 17 14 21 21 C 1.38812 * 119.99800 * 202.39868 * 19 17 14 22 22 N 1.31612 * 120.00403 * 15.43362 * 21 19 17 23 23 Si 1.86806 * 119.99723 * 195.43553 * 21 19 17 24 24 H 1.48494 * 109.47407 * 59.99894 * 23 21 19 25 25 H 1.48500 * 109.46817 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46956 * 299.99638 * 23 21 19 27 27 C 1.39147 * 120.16320 * 0.27382 * 10 9 8 28 28 C 1.37647 * 120.07630 * 359.44726 * 27 10 9 29 29 H 1.09008 * 109.47169 * 59.99687 * 1 2 3 30 30 H 1.08997 * 109.47350 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46870 * 299.99787 * 1 2 3 32 32 H 1.09003 * 109.47161 * 240.00537 * 2 1 3 33 33 H 1.08999 * 109.47393 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47377 * 300.00727 * 3 2 1 35 35 H 1.09009 * 109.46842 * 59.99825 * 3 2 1 36 36 H 1.08003 * 120.03526 * 0.02562 * 8 7 5 37 37 H 1.07997 * 119.96082 * 179.97438 * 9 8 7 38 38 H 0.97000 * 120.00005 * 327.34620 * 11 10 9 39 39 H 1.09000 * 109.46888 * 179.97438 * 16 14 12 40 40 H 1.08993 * 109.46681 * 300.00013 * 16 14 12 41 41 H 1.09000 * 109.47046 * 60.00049 * 16 14 12 42 42 H 1.09000 * 109.46962 * 95.08653 * 18 17 14 43 43 H 1.08996 * 109.46819 * 215.08832 * 18 17 14 44 44 H 1.08999 * 109.46872 * 335.09147 * 18 17 14 45 45 H 0.97004 * 120.00568 * 180.02562 * 22 21 19 46 46 H 1.07995 * 119.96144 * 179.70197 * 27 10 9 47 47 H 1.07993 * 120.04177 * 180.24552 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0140 -0.6846 1.1855 5 6 2.2179 -2.0127 1.0846 6 8 1.9977 -2.5831 0.0346 7 6 2.7093 -2.7738 2.2481 8 6 2.9209 -4.1519 2.1455 9 6 3.3792 -4.8592 3.2338 10 6 3.6313 -4.2041 4.4353 11 7 4.0949 -4.9238 5.5357 12 6 4.9304 -4.3413 6.4183 13 8 5.3538 -3.2247 6.2067 14 6 5.3384 -5.0775 7.6684 15 1 4.4521 -5.3102 8.2587 16 6 6.0517 -6.3759 7.2857 17 7 6.2430 -4.2370 8.4568 18 6 7.5126 -3.7865 7.8811 19 6 5.9018 -3.8726 9.7319 20 1 5.1873 -4.4605 10.2888 21 6 6.4744 -2.7473 10.3088 22 7 7.0980 -1.8665 9.5555 23 14 6.3600 -2.4832 12.1546 24 1 7.0106 -3.6176 12.8582 25 1 7.0455 -1.2167 12.5168 26 1 4.9324 -2.4050 12.5559 27 6 3.4159 -2.8336 4.5430 28 6 2.9633 -2.1190 3.4571 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 2.7250 -4.6609 1.2133 37 1 3.5424 -5.9239 3.1552 38 1 3.8163 -5.8437 5.6659 39 1 6.3472 -6.9081 8.1899 40 1 5.3784 -7.0010 6.6993 41 1 6.9380 -6.1432 6.6955 42 1 7.3847 -2.7925 7.4524 43 1 8.2728 -3.7507 8.6613 44 1 7.8246 -4.4811 7.1012 45 1 7.4984 -1.0803 9.9586 46 1 3.6081 -2.3293 5.4784 47 1 2.8001 -1.0547 3.5402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972340.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:19 Heat of formation + Delta-G solvation = -68.890090 kcal Electronic energy + Delta-G solvation = -28437.895892 eV Core-core repulsion = 24393.880770 eV Total energy + Delta-G solvation = -4044.015122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.76214 -40.10604 -38.30245 -36.82198 -35.57542 -34.46896 -33.35946 -32.24349 -31.02217 -30.12880 -28.88601 -27.59007 -26.03851 -24.96265 -23.95229 -22.86470 -22.34155 -21.32016 -20.57627 -19.38240 -18.17815 -17.71466 -17.06467 -16.76189 -16.17578 -16.11969 -15.19457 -14.94133 -14.79946 -14.45423 -14.31381 -13.99192 -13.71351 -13.64118 -13.45003 -13.29172 -12.99668 -12.72479 -12.64414 -12.57963 -12.37021 -12.23195 -11.99310 -11.91483 -11.49902 -11.29886 -11.15889 -10.87241 -10.83109 -10.77062 -10.69158 -10.53591 -10.47063 -10.19913 -10.03219 -9.91580 -9.23707 -8.96666 -8.54410 -8.05221 -6.83089 -5.75756 -3.24689 0.68337 1.40020 2.46930 2.53688 3.21020 3.28043 3.37909 3.42247 3.43602 3.86617 4.43405 4.49872 4.58632 4.62694 4.79264 4.84768 4.93489 5.16919 5.21807 5.28213 5.29126 5.38634 5.41419 5.43924 5.46502 5.53464 5.60616 5.74447 5.77563 5.83751 5.84177 6.01353 6.07158 6.14381 6.30798 6.33430 6.37948 6.41561 6.55844 6.60350 6.83726 7.04335 7.37331 7.64326 7.70606 7.74652 7.93763 8.30167 8.68412 9.15304 9.77372 10.25857 11.26254 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016257 B = 0.002432 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.913997 B =11509.244587 C =12703.783143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.081 3.919 3 C -0.151 4.151 4 O -0.349 6.349 5 C 0.516 3.484 6 O -0.518 6.518 7 C -0.167 4.167 8 C -0.031 4.031 9 C -0.174 4.174 10 C 0.206 3.794 11 N -0.687 5.687 12 C 0.481 3.519 13 O -0.485 6.485 14 C 0.157 3.843 15 H 0.092 0.908 16 C -0.158 4.158 17 N -0.566 5.566 18 C 0.163 3.837 19 C -0.272 4.272 20 H 0.071 0.929 21 C 0.010 3.990 22 N -0.889 5.889 23 Si 0.906 3.094 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.282 1.282 27 C -0.142 4.142 28 C -0.036 4.036 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.407 0.593 39 H 0.068 0.932 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.039 0.961 44 H -0.003 1.003 45 H 0.255 0.745 46 H 0.147 0.853 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.864 -2.912 -16.450 19.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.026 3.974 3 C -0.208 4.208 4 O -0.266 6.266 5 C 0.363 3.637 6 O -0.408 6.408 7 C -0.169 4.169 8 C -0.050 4.050 9 C -0.195 4.195 10 C 0.108 3.892 11 N -0.334 5.334 12 C 0.267 3.733 13 O -0.355 6.355 14 C 0.043 3.957 15 H 0.110 0.890 16 C -0.217 4.217 17 N -0.285 5.285 18 C 0.019 3.981 19 C -0.401 4.401 20 H 0.089 0.911 21 C -0.190 4.190 22 N -0.531 5.531 23 Si 0.736 3.264 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.208 1.208 27 C -0.163 4.163 28 C -0.055 4.055 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.243 0.757 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.016 0.984 45 H 0.065 0.935 46 H 0.164 0.836 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.414 -2.013 -16.709 19.791 hybrid contribution -0.281 -0.121 0.775 0.833 sum -10.695 -2.134 -15.935 19.309 Atomic orbital electron populations 1.22214 0.94359 1.03081 1.03061 1.22725 0.94559 0.93081 0.87038 1.21898 1.02301 0.93404 1.03169 1.86641 1.77201 1.21853 1.40891 1.21161 0.73848 0.80820 0.87878 1.90790 1.49501 1.70185 1.30347 1.18963 1.11349 0.93667 0.92910 1.20931 0.93848 0.91809 0.98413 1.20820 1.06710 1.00650 0.91328 1.18271 0.91341 0.92213 0.87380 1.44501 1.48135 1.16720 1.24036 1.23792 0.76501 0.88218 0.84767 1.90716 1.51522 1.19052 1.74163 1.20595 0.95181 0.91445 0.88455 0.88998 1.22247 1.00777 0.96859 1.01863 1.43904 1.15354 1.57823 1.11468 1.20832 0.85905 0.96778 0.94585 1.19154 1.25994 1.06880 0.88073 0.91133 1.25115 1.00586 0.95043 0.98305 1.70128 1.38963 1.10469 1.33515 0.86328 0.77781 0.77168 0.85149 1.20888 1.21563 1.20840 1.21293 1.01005 0.93237 1.00724 1.21322 0.93062 1.00281 0.90800 0.90775 0.91957 0.91427 0.89750 0.91539 0.90419 0.91238 0.84612 0.84909 0.75672 0.91331 0.93382 0.92574 0.93600 0.94263 0.98423 0.93511 0.83557 0.84461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 9.55 37.16 0.35 -1.05 16 2 C 0.08 0.79 3.19 -26.73 -0.09 0.70 16 3 C -0.15 -1.13 9.57 37.16 0.36 -0.77 16 4 O -0.35 -4.34 9.12 -40.62 -0.37 -4.71 16 5 C 0.52 7.12 7.86 34.49 0.27 7.39 16 6 O -0.52 -7.87 15.60 -19.27 -0.30 -8.17 16 7 C -0.17 -2.26 5.88 -104.96 -0.62 -2.88 16 8 C -0.03 -0.38 9.58 -39.21 -0.38 -0.76 16 9 C -0.17 -2.06 9.94 -39.46 -0.39 -2.45 16 10 C 0.21 2.95 6.29 -83.73 -0.53 2.42 16 11 N -0.69 -9.62 5.24 -9.86 -0.05 -9.67 16 12 C 0.48 9.03 6.78 -10.99 -0.07 8.95 16 13 O -0.49 -11.35 12.49 5.56 0.07 -11.29 16 14 C 0.16 2.97 3.13 -69.08 -0.22 2.75 16 15 H 0.09 1.63 7.86 -51.93 -0.41 1.22 16 16 C -0.16 -2.35 9.08 37.16 0.34 -2.01 16 17 N -0.57 -13.86 2.58 -174.81 -0.45 -14.31 16 18 C 0.16 4.11 7.63 59.85 0.46 4.57 16 19 C -0.27 -7.25 9.58 -15.06 -0.14 -7.40 16 20 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 21 C 0.01 0.28 5.05 -17.43 -0.09 0.19 16 22 N -0.89 -26.09 10.81 55.49 0.60 -25.49 16 23 Si 0.91 21.42 29.58 -169.99 -5.03 16.39 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C -0.14 -2.25 8.63 -39.46 -0.34 -2.59 16 28 C -0.04 -0.50 9.60 -39.21 -0.38 -0.88 16 29 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.88 7.16 -51.93 -0.37 0.50 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.14 1.49 7.64 -52.48 -0.40 1.09 16 37 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.41 4.14 8.09 -40.82 -0.33 3.81 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.52 7.45 -51.93 -0.39 0.13 16 41 H 0.06 0.89 6.67 -51.93 -0.35 0.55 16 42 H 0.05 1.31 6.66 -51.93 -0.35 0.96 16 43 H 0.04 1.04 7.36 -51.93 -0.38 0.66 16 44 H 0.00 -0.06 6.44 -51.93 -0.33 -0.40 16 45 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.15 2.70 6.36 -52.49 -0.33 2.37 16 47 H 0.14 1.75 7.60 -52.49 -0.40 1.35 16 LS Contribution 388.60 15.07 5.86 5.86 Total: -1.00 -33.54 388.60 -8.11 -41.65 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -6.97 Total: 3.54 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -1.46 Total: 6.20 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.10 Total: -49.47 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.60 Total: -24.17 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.54 -8.11 -41.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972340.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.241 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds