Wall clock time and date at job start Tue Mar 31 2020 18:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47370 * 2 1 4 4 O 1.45202 * 109.47223 * 120.00504 * 2 1 3 5 5 C 1.34746 * 116.99893 * 89.99653 * 4 2 1 6 6 O 1.21505 * 120.00215 * 0.02562 * 5 4 2 7 7 C 1.47463 * 119.99915 * 179.97438 * 5 4 2 8 8 C 1.39803 * 120.08199 * 179.97438 * 7 5 4 9 9 C 1.37649 * 119.92574 * 180.02562 * 8 7 5 10 10 C 1.39151 * 120.07163 * 0.02562 * 9 8 7 11 11 N 1.39420 * 119.91655 * 179.97438 * 10 9 8 12 12 C 1.34769 * 119.99763 * 147.33356 * 11 10 9 13 13 O 1.21280 * 120.00467 * 354.79713 * 12 11 10 14 14 C 1.50700 * 119.99880 * 174.78724 * 12 11 10 15 15 H 1.08999 * 109.47592 * 300.00433 * 14 12 11 16 16 C 1.53005 * 109.46973 * 60.00655 * 14 12 11 17 17 N 1.46505 * 109.47227 * 180.02562 * 14 12 11 18 18 C 1.46504 * 119.99918 * 300.00091 * 17 14 12 19 19 C 1.36935 * 120.00110 * 120.00351 * 17 14 12 20 20 H 1.07999 * 120.00179 * 22.39644 * 19 17 14 21 21 C 1.38812 * 119.99800 * 202.39868 * 19 17 14 22 22 N 1.31612 * 120.00403 * 15.43362 * 21 19 17 23 23 Si 1.86806 * 119.99723 * 195.43553 * 21 19 17 24 24 H 1.48494 * 109.47407 * 59.99894 * 23 21 19 25 25 H 1.48500 * 109.46817 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46956 * 299.99638 * 23 21 19 27 27 C 1.39147 * 120.16320 * 0.27382 * 10 9 8 28 28 C 1.37647 * 120.07630 * 359.44726 * 27 10 9 29 29 H 1.09008 * 109.47169 * 59.99687 * 1 2 3 30 30 H 1.08997 * 109.47350 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46870 * 299.99787 * 1 2 3 32 32 H 1.09003 * 109.47161 * 240.00537 * 2 1 3 33 33 H 1.08999 * 109.47393 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47377 * 300.00727 * 3 2 1 35 35 H 1.09009 * 109.46842 * 59.99825 * 3 2 1 36 36 H 1.08003 * 120.03526 * 0.02562 * 8 7 5 37 37 H 1.07997 * 119.96082 * 179.97438 * 9 8 7 38 38 H 0.97000 * 120.00005 * 327.34620 * 11 10 9 39 39 H 1.09000 * 109.46888 * 179.97438 * 16 14 12 40 40 H 1.08993 * 109.46681 * 300.00013 * 16 14 12 41 41 H 1.09000 * 109.47046 * 60.00049 * 16 14 12 42 42 H 1.09000 * 109.46962 * 95.08653 * 18 17 14 43 43 H 1.08996 * 109.46819 * 215.08832 * 18 17 14 44 44 H 1.08999 * 109.46872 * 335.09147 * 18 17 14 45 45 H 0.97004 * 120.00568 * 180.02562 * 22 21 19 46 46 H 1.07995 * 119.96144 * 179.70197 * 27 10 9 47 47 H 1.07993 * 120.04177 * 180.24552 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0140 -0.6846 1.1855 5 6 2.2179 -2.0127 1.0846 6 8 1.9977 -2.5831 0.0346 7 6 2.7093 -2.7738 2.2481 8 6 2.9209 -4.1519 2.1455 9 6 3.3792 -4.8592 3.2338 10 6 3.6313 -4.2041 4.4353 11 7 4.0949 -4.9238 5.5357 12 6 4.9304 -4.3413 6.4183 13 8 5.3538 -3.2247 6.2067 14 6 5.3384 -5.0775 7.6684 15 1 4.4521 -5.3102 8.2587 16 6 6.0517 -6.3759 7.2857 17 7 6.2430 -4.2370 8.4568 18 6 7.5126 -3.7865 7.8811 19 6 5.9018 -3.8726 9.7319 20 1 5.1873 -4.4605 10.2888 21 6 6.4744 -2.7473 10.3088 22 7 7.0980 -1.8665 9.5555 23 14 6.3600 -2.4832 12.1546 24 1 7.0106 -3.6176 12.8582 25 1 7.0455 -1.2167 12.5168 26 1 4.9324 -2.4050 12.5559 27 6 3.4159 -2.8336 4.5430 28 6 2.9633 -2.1190 3.4571 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 2.7250 -4.6609 1.2133 37 1 3.5424 -5.9239 3.1552 38 1 3.8163 -5.8437 5.6659 39 1 6.3472 -6.9081 8.1899 40 1 5.3784 -7.0010 6.6993 41 1 6.9380 -6.1432 6.6955 42 1 7.3847 -2.7925 7.4524 43 1 8.2728 -3.7507 8.6613 44 1 7.8246 -4.4811 7.1012 45 1 7.4984 -1.0803 9.9586 46 1 3.6081 -2.3293 5.4784 47 1 2.8001 -1.0547 3.5402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972340.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:18 Heat of formation + Delta-G solvation = -89.027862 kcal Electronic energy + Delta-G solvation = -28438.769131 eV Core-core repulsion = 24393.880770 eV Total energy + Delta-G solvation = -4044.888361 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.87119 -41.36237 -39.54768 -37.87121 -37.28432 -35.83329 -34.20998 -33.98131 -32.09559 -31.59815 -30.32652 -28.22390 -28.03908 -26.22968 -25.43012 -23.96572 -23.70891 -22.50838 -21.58688 -20.81735 -19.20493 -19.04749 -18.77900 -17.87411 -17.65636 -17.12275 -16.97282 -16.26781 -15.79649 -15.74925 -15.65323 -15.19831 -15.07755 -14.81237 -14.73506 -14.44929 -14.23485 -14.09942 -13.76126 -13.69748 -13.39071 -13.19413 -13.16259 -13.07204 -12.74964 -12.71841 -12.54993 -12.44892 -12.37267 -12.32642 -11.95031 -11.91849 -11.80503 -11.73722 -11.50698 -11.44311 -10.82065 -10.50987 -10.07025 -9.23808 -8.81340 -7.80876 -5.32545 -0.43124 0.33533 1.32045 1.47493 1.50090 1.57035 1.61258 1.82804 2.07427 2.51530 2.76066 3.32296 3.58218 3.60958 3.74199 3.79210 3.88410 3.92686 3.98693 4.12261 4.24015 4.32615 4.36777 4.44257 4.54282 4.64406 4.73438 4.74351 4.75861 4.81475 4.96147 4.97797 5.06646 5.06980 5.12219 5.19829 5.23144 5.25326 5.26875 5.38706 5.46265 5.46994 5.64481 5.81869 5.88272 6.26771 6.51867 6.66313 7.10507 7.30071 7.83514 8.27380 9.20486 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016257 B = 0.002432 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.913997 B =11509.244587 C =12703.783143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.070 3.930 3 C -0.147 4.147 4 O -0.357 6.357 5 C 0.517 3.483 6 O -0.534 6.534 7 C -0.171 4.171 8 C -0.028 4.028 9 C -0.151 4.151 10 C 0.190 3.810 11 N -0.664 5.664 12 C 0.486 3.514 13 O -0.540 6.540 14 C 0.149 3.851 15 H 0.107 0.893 16 C -0.146 4.146 17 N -0.586 5.586 18 C 0.186 3.814 19 C -0.273 4.273 20 H 0.084 0.916 21 C -0.054 4.054 22 N -0.932 5.932 23 Si 0.973 3.027 24 H -0.272 1.272 25 H -0.300 1.300 26 H -0.273 1.273 27 C -0.162 4.162 28 C -0.038 4.038 29 H 0.098 0.902 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.156 0.844 37 H 0.175 0.825 38 H 0.430 0.570 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.044 0.956 42 H 0.002 0.998 43 H 0.013 0.987 44 H 0.023 0.977 45 H 0.246 0.754 46 H 0.111 0.889 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.576 -5.395 -17.742 22.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.016 3.984 3 C -0.204 4.204 4 O -0.274 6.274 5 C 0.365 3.635 6 O -0.426 6.426 7 C -0.173 4.173 8 C -0.047 4.047 9 C -0.171 4.171 10 C 0.093 3.907 11 N -0.312 5.312 12 C 0.273 3.727 13 O -0.414 6.414 14 C 0.037 3.963 15 H 0.125 0.875 16 C -0.205 4.205 17 N -0.307 5.307 18 C 0.041 3.959 19 C -0.403 4.403 20 H 0.102 0.898 21 C -0.250 4.250 22 N -0.577 5.577 23 Si 0.800 3.200 24 H -0.198 1.198 25 H -0.227 1.227 26 H -0.199 1.199 27 C -0.183 4.183 28 C -0.057 4.057 29 H 0.117 0.883 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.122 0.878 35 H 0.089 0.911 36 H 0.174 0.826 37 H 0.192 0.808 38 H 0.270 0.730 39 H 0.088 0.912 40 H 0.116 0.884 41 H 0.063 0.937 42 H 0.021 0.979 43 H 0.032 0.968 44 H 0.042 0.958 45 H 0.055 0.945 46 H 0.129 0.871 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.197 -4.578 -18.032 22.246 hybrid contribution 0.119 0.606 0.993 1.169 sum -12.078 -3.972 -17.039 21.260 Atomic orbital electron populations 1.22207 0.93104 1.02522 1.04468 1.23069 0.95685 0.93883 0.85762 1.21928 1.01933 0.92009 1.04494 1.86641 1.77047 1.21315 1.42363 1.21180 0.73509 0.81240 0.87598 1.90775 1.50381 1.70594 1.30841 1.19140 1.11124 0.94571 0.92477 1.21236 0.92877 0.91210 0.99374 1.21125 1.04206 1.02359 0.89395 1.18357 0.92344 0.91695 0.88289 1.43910 1.46725 1.17464 1.23091 1.23355 0.76718 0.87222 0.85391 1.90731 1.53858 1.21297 1.75483 1.20902 0.95403 0.91702 0.88293 0.87536 1.22135 1.00909 0.94893 1.02520 1.44030 1.16335 1.58388 1.11943 1.20393 0.86229 0.95298 0.93972 1.19623 1.24904 1.06262 0.89472 0.89794 1.25955 1.01248 0.95249 1.02513 1.70342 1.41148 1.11123 1.35060 0.85273 0.77911 0.76621 0.80173 1.19814 1.22685 1.19901 1.21108 1.02795 0.94470 0.99924 1.21286 0.93139 1.00506 0.90737 0.88309 0.93439 0.91097 0.90460 0.92158 0.87835 0.91135 0.82629 0.80808 0.72988 0.91192 0.88362 0.93694 0.97940 0.96830 0.95833 0.94504 0.87068 0.84230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 9.55 71.98 0.69 -1.85 16 2 C 0.07 1.31 3.19 30.59 0.10 1.41 16 3 C -0.15 -2.01 9.57 71.98 0.69 -1.32 16 4 O -0.36 -8.79 9.12 -56.57 -0.52 -9.31 16 5 C 0.52 13.92 7.86 70.25 0.55 14.47 16 6 O -0.53 -15.68 15.60 19.82 0.31 -15.38 16 7 C -0.17 -4.48 5.88 -20.09 -0.12 -4.60 16 8 C -0.03 -0.62 9.58 22.51 0.22 -0.40 16 9 C -0.15 -3.01 9.94 22.35 0.22 -2.79 16 10 C 0.19 5.13 6.29 38.37 0.24 5.37 16 11 N -0.66 -17.03 5.24 -303.49 -1.59 -18.62 16 12 C 0.49 17.95 6.78 87.66 0.59 18.54 16 13 O -0.54 -26.22 12.49 -3.03 -0.04 -26.25 16 14 C 0.15 5.40 3.13 44.25 0.14 5.54 16 15 H 0.11 3.53 7.86 -2.39 -0.02 3.51 16 16 C -0.15 -3.85 9.08 71.98 0.65 -3.20 16 17 N -0.59 -28.97 2.58 -706.97 -1.83 -30.80 16 18 C 0.19 9.73 7.63 127.77 0.98 10.71 16 19 C -0.27 -14.67 9.58 84.03 0.80 -13.86 16 20 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 21 C -0.05 -3.04 5.05 84.86 0.43 -2.61 16 22 N -0.93 -57.47 10.81 21.65 0.23 -57.23 16 23 Si 0.97 45.00 29.58 68.60 2.03 47.03 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 25 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 C -0.16 -5.25 8.63 22.35 0.19 -5.06 16 28 C -0.04 -1.08 9.60 22.51 0.22 -0.86 16 29 H 0.10 1.00 8.14 -2.38 -0.02 0.99 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 1.56 7.16 -2.39 -0.02 1.54 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.16 2.85 7.64 -2.91 -0.02 2.83 16 37 H 0.17 2.07 8.06 -2.91 -0.02 2.04 16 38 H 0.43 6.88 8.09 -92.71 -0.75 6.13 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.10 1.61 7.45 -2.39 -0.02 1.59 16 41 H 0.04 1.30 6.67 -2.39 -0.02 1.29 16 42 H 0.00 0.14 6.66 -2.39 -0.02 0.12 16 43 H 0.01 0.73 7.36 -2.39 -0.02 0.71 16 44 H 0.02 1.06 6.44 -2.39 -0.02 1.05 16 45 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 46 H 0.11 4.42 6.36 -2.91 -0.02 4.40 16 47 H 0.14 3.76 7.60 -2.91 -0.02 3.73 16 Total: -1.00 -78.19 388.60 5.43 -72.77 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.24 Total: 18.29 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: 6.59 Total: 19.50 kcal Atomic # 7 Polarization: -103.47 SS G_CDS: -3.18 Total: -106.65 kcal Atomic # 8 Polarization: -50.69 SS G_CDS: -0.24 Total: -50.94 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -78.19 5.43 -72.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972340.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.262 kcal (2) G-P(sol) polarization free energy of solvation -78.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds