Wall clock time and date at job start Tue Mar 31 2020 18:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47056 * 2 1 4 4 N 1.46499 * 109.47470 * 239.99775 * 2 1 3 5 5 C 1.39924 * 120.00137 * 84.99751 * 4 2 1 6 6 C 1.38865 * 119.96625 * 0.02562 * 5 4 2 7 7 C 1.38304 * 120.13469 * 179.97438 * 6 5 4 8 8 C 1.38451 * 119.80824 * 0.02562 * 7 6 5 9 9 C 1.38750 * 120.19435 * 0.03301 * 8 7 6 10 10 C 1.38424 * 120.13635 * 359.94165 * 9 8 7 11 11 O 1.36469 * 119.61363 * 179.97438 * 9 8 7 12 12 C 1.42900 * 115.93963 * 68.34274 * 11 9 8 13 13 C 1.52067 * 110.76615 * 275.56301 * 12 11 9 14 14 C 1.52054 * 112.37054 * 64.79053 * 13 12 11 15 15 O 1.36593 * 120.23319 * 180.02562 * 8 7 6 16 16 C 1.50704 * 109.46960 * 119.99693 * 2 1 3 17 17 O 1.21284 * 119.99699 * 120.00549 * 16 2 1 18 18 N 1.34776 * 120.00225 * 300.00054 * 16 2 1 19 19 C 1.46500 * 119.99575 * 0.02562 * 18 16 2 20 20 C 1.46493 * 119.99997 * 180.02562 * 18 16 2 21 21 C 1.50697 * 109.47311 * 90.00529 * 20 18 16 22 22 H 1.07998 * 119.99818 * 359.97438 * 21 20 18 23 23 C 1.37881 * 119.99983 * 180.02562 * 21 20 18 24 24 N 1.31512 * 120.00177 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99883 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46913 * 89.99840 * 25 23 21 27 27 H 1.48493 * 109.47215 * 209.99869 * 25 23 21 28 28 H 1.48501 * 109.46984 * 329.99990 * 25 23 21 29 29 H 1.09005 * 109.46767 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47431 * 299.99977 * 1 2 3 31 31 H 1.08998 * 109.47261 * 60.00387 * 1 2 3 32 32 H 0.97000 * 120.00268 * 264.99828 * 4 2 1 33 33 H 1.07994 * 119.93564 * 359.66484 * 6 5 4 34 34 H 1.08003 * 120.09752 * 180.02562 * 7 6 5 35 35 H 1.08004 * 120.16775 * 180.02562 * 10 9 8 36 36 H 1.09000 * 109.21496 * 35.88829 * 12 11 9 37 37 H 1.09000 * 109.21983 * 155.22578 * 12 11 9 38 38 H 1.09008 * 108.89844 * 185.53532 * 13 12 11 39 39 H 1.08997 * 108.90130 * 304.13590 * 13 12 11 40 40 H 1.09007 * 109.21862 * 55.51487 * 14 13 12 41 41 H 1.09005 * 109.21820 * 174.83959 * 14 13 12 42 42 H 1.09004 * 109.46894 * 90.00048 * 19 18 16 43 43 H 1.09004 * 109.46912 * 209.99539 * 19 18 16 44 44 H 1.09004 * 109.47680 * 330.00044 * 19 18 16 45 45 H 1.09010 * 109.46908 * 210.00121 * 20 18 16 46 46 H 1.09001 * 109.47506 * 329.99947 * 20 18 16 47 47 H 0.96994 * 120.00311 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1520 0.0073 -2.4015 6 6 1.8220 1.3548 -2.4630 7 6 1.9532 2.0481 -3.6525 8 6 2.4143 1.3948 -4.7827 9 6 2.7438 0.0482 -4.7247 10 6 2.6140 -0.6484 -3.5356 11 8 3.1967 -0.5841 -5.8461 12 6 4.4862 -0.1822 -6.3126 13 6 4.3805 1.0557 -7.1895 14 6 3.8875 2.2703 -6.4191 15 8 2.5478 2.0713 -5.9618 16 6 2.0323 -0.7104 1.2305 17 8 2.7296 -1.6964 1.1193 18 7 1.7067 -0.2499 2.4546 19 6 0.8639 0.9409 2.5889 20 6 2.1954 -0.9401 3.6508 21 6 3.5227 -0.3560 4.0607 22 1 3.9588 0.4487 3.4874 23 6 4.1808 -0.8495 5.1673 24 7 3.6501 -1.8297 5.8652 25 14 5.8265 -0.1259 5.6750 26 1 5.6026 0.9990 6.6183 27 1 6.6440 -1.1730 6.3385 28 1 6.5408 0.3716 4.4719 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 2.2491 -1.6318 -1.1525 33 1 1.4573 1.8611 -1.5816 34 1 1.6968 3.0962 -3.6996 35 1 2.8707 -1.6965 -3.4898 36 1 5.1247 0.0377 -5.4571 37 1 4.9280 -0.9943 -6.8900 38 1 5.3626 1.2773 -7.6074 39 1 3.6877 0.8520 -8.0060 40 1 4.5382 2.4394 -5.5610 41 1 3.9183 3.1446 -7.0694 42 1 -0.1839 0.6425 2.6224 43 1 1.1216 1.4665 3.5084 44 1 1.0270 1.5997 1.7359 45 1 1.4774 -0.8149 4.4614 46 1 2.3169 -2.0014 3.4338 47 1 4.1129 -2.1766 6.6438 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070823792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:08 Heat of formation + Delta-G solvation = -68.892559 kcal Electronic energy + Delta-G solvation = -28859.403761 eV Core-core repulsion = 24815.388532 eV Total energy + Delta-G solvation = -4044.015229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.90828 -39.70575 -38.13437 -37.49725 -35.32345 -35.01513 -33.00098 -32.60995 -31.35258 -29.88194 -27.94961 -27.53507 -26.55138 -26.16046 -24.12434 -23.22729 -22.50864 -21.78373 -21.05675 -18.94155 -18.57808 -17.53793 -17.09746 -16.79421 -16.56390 -15.96606 -15.53916 -15.35652 -15.24146 -14.94482 -14.62373 -14.25769 -14.07501 -13.99084 -13.84963 -13.65903 -13.54322 -13.07944 -12.93193 -12.55737 -12.39765 -12.23534 -12.01520 -11.93081 -11.55151 -11.51424 -11.27843 -11.16058 -11.05978 -10.95559 -10.64362 -10.59018 -10.22833 -10.10848 -9.80480 -9.70957 -9.04119 -8.81721 -8.50035 -7.79139 -7.35863 -6.10972 -4.16147 1.12801 1.31721 3.06356 3.20340 3.25818 3.32938 3.37084 3.38434 3.44790 3.85140 3.98775 4.38870 4.39054 4.48130 4.78345 4.81216 4.85429 4.97167 5.03024 5.07664 5.14429 5.16850 5.20791 5.24014 5.28879 5.40648 5.47371 5.49907 5.62385 5.66157 5.69732 5.78477 5.80476 5.92220 6.05688 6.19467 6.21486 6.30233 6.36047 6.89589 7.02657 7.21129 7.33546 7.41522 7.53829 7.75619 7.84640 8.14755 8.25545 8.77636 8.92923 9.49158 10.97177 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016849 B = 0.002466 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.428514 B =11351.498779 C =11998.756976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.129 3.871 3 H 0.100 0.900 4 N -0.719 5.719 5 C 0.241 3.759 6 C -0.196 4.196 7 C -0.063 4.063 8 C -0.006 4.006 9 C 0.116 3.884 10 C -0.197 4.197 11 O -0.322 6.322 12 C 0.062 3.938 13 C -0.185 4.185 14 C 0.057 3.943 15 O -0.318 6.318 16 C 0.502 3.498 17 O -0.537 6.537 18 N -0.595 5.595 19 C 0.078 3.922 20 C 0.245 3.755 21 C -0.528 4.528 22 H 0.057 0.943 23 C 0.062 3.938 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.411 0.589 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.098 0.902 42 H 0.051 0.949 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.035 0.965 46 H 0.044 0.956 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.913 9.072 -21.602 23.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.019 3.981 3 H 0.118 0.882 4 N -0.349 5.349 5 C 0.135 3.865 6 C -0.219 4.219 7 C -0.082 4.082 8 C -0.052 4.052 9 C 0.072 3.928 10 C -0.220 4.220 11 O -0.239 6.239 12 C -0.013 4.013 13 C -0.223 4.223 14 C -0.019 4.019 15 O -0.234 6.234 16 C 0.287 3.713 17 O -0.414 6.414 18 N -0.327 5.327 19 C -0.066 4.066 20 C 0.126 3.874 21 C -0.567 4.567 22 H 0.075 0.925 23 C -0.141 4.141 24 N -0.533 5.533 25 Si 0.726 3.274 26 H -0.206 1.206 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.249 0.751 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.116 0.884 42 H 0.070 0.930 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.053 0.947 46 H 0.062 0.938 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.804 8.444 -21.501 23.411 hybrid contribution 1.373 0.142 0.513 1.473 sum -2.430 8.586 -20.989 22.807 Atomic orbital electron populations 1.22476 0.93780 1.03615 1.03531 1.20799 0.95059 0.97359 0.84875 0.88243 1.44585 1.71542 1.13120 1.05629 1.17618 0.92139 0.91116 0.85598 1.20613 1.09689 0.93020 0.98576 1.20769 0.97809 0.99715 0.89947 1.18802 1.09210 0.90001 0.87159 1.18750 0.97735 0.90149 0.86190 1.20407 1.10213 1.01356 0.90009 1.86321 1.34266 1.62447 1.40838 1.22590 0.83444 0.97432 0.97844 1.22455 1.02987 0.96098 1.00785 1.22598 0.83490 0.97393 0.98380 1.86427 1.26259 1.74747 1.35988 1.20233 0.81244 0.85334 0.84515 1.90672 1.37910 1.26835 1.85969 1.48090 1.49332 1.28190 1.07094 1.21864 0.93933 0.88042 1.02771 1.19336 0.94349 0.93717 0.79964 1.21404 1.04836 1.19166 1.11320 0.92466 1.24938 0.97997 0.94901 0.96241 1.69923 1.39100 1.25943 1.18302 0.86486 0.83551 0.78716 0.78618 1.20573 1.21039 1.19898 0.91773 0.89901 0.91445 0.75104 0.85112 0.84998 0.84920 0.92365 0.88066 0.89506 0.90026 0.92646 0.88411 0.93026 0.90514 0.92230 0.94749 0.93772 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 9.06 37.16 0.34 -1.65 16 2 C 0.13 1.81 1.87 -69.08 -0.13 1.68 16 3 H 0.10 1.27 5.74 -51.93 -0.30 0.97 16 4 N -0.72 -10.19 5.13 -53.23 -0.27 -10.46 16 5 C 0.24 3.17 6.64 -83.68 -0.56 2.61 16 6 C -0.20 -2.30 8.85 -39.33 -0.35 -2.65 16 7 C -0.06 -0.72 10.00 -39.48 -0.39 -1.12 16 8 C -0.01 -0.08 5.73 -39.31 -0.23 -0.30 16 9 C 0.12 1.55 5.73 -39.32 -0.23 1.33 16 10 C -0.20 -2.60 9.85 -39.26 -0.39 -2.98 16 11 O -0.32 -4.15 10.16 -36.71 -0.37 -4.52 16 12 C 0.06 0.56 6.51 36.68 0.24 0.80 16 13 C -0.19 -1.42 5.92 -27.69 -0.16 -1.58 16 14 C 0.06 0.49 6.51 36.68 0.24 0.73 16 15 O -0.32 -3.91 10.17 -37.12 -0.38 -4.28 16 16 C 0.50 9.81 7.14 -10.98 -0.08 9.74 16 17 O -0.54 -12.84 15.42 5.55 0.09 -12.75 16 18 N -0.60 -11.86 2.86 -182.95 -0.52 -12.38 16 19 C 0.08 1.11 8.80 59.85 0.53 1.64 16 20 C 0.25 6.20 5.16 -5.20 -0.03 6.18 16 21 C -0.53 -14.65 9.39 -34.44 -0.32 -14.97 16 22 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 23 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 24 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 25 Si 0.90 21.56 29.54 -169.99 -5.02 16.53 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.84 4.53 -51.93 -0.24 0.60 16 31 H 0.07 0.67 7.69 -51.93 -0.40 0.27 16 32 H 0.41 6.22 7.80 -40.82 -0.32 5.90 16 33 H 0.13 1.32 6.08 -52.49 -0.32 1.00 16 34 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 35 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 36 H 0.06 0.52 7.93 -51.93 -0.41 0.11 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.44 8.14 -51.92 -0.42 0.01 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.47 7.93 -51.93 -0.41 0.05 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.62 6.95 -51.93 -0.36 0.25 16 43 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 44 H 0.06 0.67 6.01 -51.93 -0.31 0.36 16 45 H 0.03 0.88 8.07 -51.92 -0.42 0.46 16 46 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 47 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 377.69 15.07 5.69 5.69 Total: -1.00 -33.83 377.69 -8.46 -42.29 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.80 Total: 4.21 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.61 Total: 1.08 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.06 Total: -48.25 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.66 Total: -21.56 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.83 -8.46 -42.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070823792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.600 kcal (2) G-P(sol) polarization free energy of solvation -33.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds