Wall clock time and date at job start Tue Mar 31 2020 18:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47056 * 2 1 4 4 N 1.46499 * 109.47470 * 239.99775 * 2 1 3 5 5 C 1.39924 * 120.00137 * 84.99751 * 4 2 1 6 6 C 1.38865 * 119.96625 * 0.02562 * 5 4 2 7 7 C 1.38304 * 120.13469 * 179.97438 * 6 5 4 8 8 C 1.38451 * 119.80824 * 0.02562 * 7 6 5 9 9 C 1.38750 * 120.19435 * 0.03301 * 8 7 6 10 10 C 1.38424 * 120.13635 * 359.94165 * 9 8 7 11 11 O 1.36469 * 119.61363 * 179.97438 * 9 8 7 12 12 C 1.42900 * 115.93963 * 68.34274 * 11 9 8 13 13 C 1.52067 * 110.76615 * 275.56301 * 12 11 9 14 14 C 1.52054 * 112.37054 * 64.79053 * 13 12 11 15 15 O 1.36593 * 120.23319 * 180.02562 * 8 7 6 16 16 C 1.50704 * 109.46960 * 119.99693 * 2 1 3 17 17 O 1.21284 * 119.99699 * 120.00549 * 16 2 1 18 18 N 1.34776 * 120.00225 * 300.00054 * 16 2 1 19 19 C 1.46500 * 119.99575 * 0.02562 * 18 16 2 20 20 C 1.46493 * 119.99997 * 180.02562 * 18 16 2 21 21 C 1.50697 * 109.47311 * 90.00529 * 20 18 16 22 22 H 1.07998 * 119.99818 * 359.97438 * 21 20 18 23 23 C 1.37881 * 119.99983 * 180.02562 * 21 20 18 24 24 N 1.31512 * 120.00177 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99883 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46913 * 89.99840 * 25 23 21 27 27 H 1.48493 * 109.47215 * 209.99869 * 25 23 21 28 28 H 1.48501 * 109.46984 * 329.99990 * 25 23 21 29 29 H 1.09005 * 109.46767 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47431 * 299.99977 * 1 2 3 31 31 H 1.08998 * 109.47261 * 60.00387 * 1 2 3 32 32 H 0.97000 * 120.00268 * 264.99828 * 4 2 1 33 33 H 1.07994 * 119.93564 * 359.66484 * 6 5 4 34 34 H 1.08003 * 120.09752 * 180.02562 * 7 6 5 35 35 H 1.08004 * 120.16775 * 180.02562 * 10 9 8 36 36 H 1.09000 * 109.21496 * 35.88829 * 12 11 9 37 37 H 1.09000 * 109.21983 * 155.22578 * 12 11 9 38 38 H 1.09008 * 108.89844 * 185.53532 * 13 12 11 39 39 H 1.08997 * 108.90130 * 304.13590 * 13 12 11 40 40 H 1.09007 * 109.21862 * 55.51487 * 14 13 12 41 41 H 1.09005 * 109.21820 * 174.83959 * 14 13 12 42 42 H 1.09004 * 109.46894 * 90.00048 * 19 18 16 43 43 H 1.09004 * 109.46912 * 209.99539 * 19 18 16 44 44 H 1.09004 * 109.47680 * 330.00044 * 19 18 16 45 45 H 1.09010 * 109.46908 * 210.00121 * 20 18 16 46 46 H 1.09001 * 109.47506 * 329.99947 * 20 18 16 47 47 H 0.96994 * 120.00311 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1520 0.0073 -2.4015 6 6 1.8220 1.3548 -2.4630 7 6 1.9532 2.0481 -3.6525 8 6 2.4143 1.3948 -4.7827 9 6 2.7438 0.0482 -4.7247 10 6 2.6140 -0.6484 -3.5356 11 8 3.1967 -0.5841 -5.8461 12 6 4.4862 -0.1822 -6.3126 13 6 4.3805 1.0557 -7.1895 14 6 3.8875 2.2703 -6.4191 15 8 2.5478 2.0713 -5.9618 16 6 2.0323 -0.7104 1.2305 17 8 2.7296 -1.6964 1.1193 18 7 1.7067 -0.2499 2.4546 19 6 0.8639 0.9409 2.5889 20 6 2.1954 -0.9401 3.6508 21 6 3.5227 -0.3560 4.0607 22 1 3.9588 0.4487 3.4874 23 6 4.1808 -0.8495 5.1673 24 7 3.6501 -1.8297 5.8652 25 14 5.8265 -0.1259 5.6750 26 1 5.6026 0.9990 6.6183 27 1 6.6440 -1.1730 6.3385 28 1 6.5408 0.3716 4.4719 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 2.2491 -1.6318 -1.1525 33 1 1.4573 1.8611 -1.5816 34 1 1.6968 3.0962 -3.6996 35 1 2.8707 -1.6965 -3.4898 36 1 5.1247 0.0377 -5.4571 37 1 4.9280 -0.9943 -6.8900 38 1 5.3626 1.2773 -7.6074 39 1 3.6877 0.8520 -8.0060 40 1 4.5382 2.4394 -5.5610 41 1 3.9183 3.1446 -7.0694 42 1 -0.1839 0.6425 2.6224 43 1 1.1216 1.4665 3.5084 44 1 1.0270 1.5997 1.7359 45 1 1.4774 -0.8149 4.4614 46 1 2.3169 -2.0014 3.4338 47 1 4.1129 -2.1766 6.6438 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070823792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:07 Heat of formation + Delta-G solvation = -91.524743 kcal Electronic energy + Delta-G solvation = -28860.385166 eV Core-core repulsion = 24815.388532 eV Total energy + Delta-G solvation = -4044.996634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.80474 -41.08242 -39.18517 -38.35982 -36.75882 -36.30877 -34.79179 -33.59861 -32.41742 -30.92410 -29.51729 -28.63644 -27.62818 -27.22798 -25.72651 -24.16843 -23.90651 -22.50536 -22.13436 -20.26584 -19.54773 -18.74197 -18.52608 -18.04889 -17.85583 -17.29998 -16.60196 -16.52333 -16.34964 -16.20074 -16.11487 -15.36378 -15.04662 -14.95273 -14.87167 -14.63534 -14.47887 -14.29437 -14.20901 -13.85614 -13.66904 -13.51174 -13.27099 -13.17294 -12.87506 -12.81931 -12.62069 -12.49888 -12.36055 -12.21706 -12.06761 -11.79639 -11.71494 -11.32774 -10.99767 -10.76957 -10.65640 -10.54388 -9.74576 -9.46836 -8.35232 -8.24348 -6.38962 0.21115 0.39066 1.35590 1.38492 1.48367 1.71378 1.94888 2.34680 2.46282 2.55107 2.63984 3.05037 3.05709 3.52597 3.75805 3.79623 3.92804 3.95548 4.13211 4.22779 4.25230 4.26606 4.40255 4.41731 4.42656 4.51448 4.61879 4.70032 4.76278 4.79930 4.82312 4.91448 4.95129 4.99350 5.07036 5.10520 5.20783 5.26074 5.28566 5.41768 5.46189 5.52837 5.79300 6.03474 6.16234 6.23763 6.55088 6.67529 6.70718 6.75164 7.23772 7.38726 8.82717 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016849 B = 0.002466 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.428514 B =11351.498779 C =11998.756976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.144 3.856 3 H 0.123 0.877 4 N -0.729 5.729 5 C 0.230 3.770 6 C -0.192 4.192 7 C -0.061 4.061 8 C -0.013 4.013 9 C 0.104 3.896 10 C -0.210 4.210 11 O -0.344 6.344 12 C 0.051 3.949 13 C -0.181 4.181 14 C 0.048 3.952 15 O -0.335 6.335 16 C 0.491 3.509 17 O -0.593 6.593 18 N -0.601 5.601 19 C 0.069 3.931 20 C 0.259 3.741 21 C -0.542 4.542 22 H 0.053 0.947 23 C 0.008 3.992 24 N -0.928 5.928 25 Si 0.967 3.033 26 H -0.262 1.262 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.050 0.950 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.402 0.598 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.127 0.873 36 H 0.056 0.944 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.122 0.878 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.098 0.902 45 H 0.028 0.972 46 H -0.003 1.003 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.948 12.175 -22.834 26.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.035 3.965 3 H 0.140 0.860 4 N -0.358 5.358 5 C 0.126 3.874 6 C -0.214 4.214 7 C -0.080 4.080 8 C -0.059 4.059 9 C 0.059 3.941 10 C -0.234 4.234 11 O -0.262 6.262 12 C -0.023 4.023 13 C -0.218 4.218 14 C -0.027 4.027 15 O -0.252 6.252 16 C 0.279 3.721 17 O -0.474 6.474 18 N -0.332 5.332 19 C -0.073 4.073 20 C 0.138 3.862 21 C -0.581 4.581 22 H 0.072 0.928 23 C -0.192 4.192 24 N -0.568 5.568 25 Si 0.791 3.209 26 H -0.187 1.187 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.069 0.931 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.238 0.762 33 H 0.171 0.829 34 H 0.175 0.825 35 H 0.145 0.855 36 H 0.075 0.925 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.140 0.860 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.117 0.883 45 H 0.046 0.954 46 H 0.015 0.985 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.873 11.609 -22.761 25.842 hybrid contribution 1.400 -0.838 0.793 1.814 sum -2.473 10.771 -21.968 24.591 Atomic orbital electron populations 1.22468 0.91178 1.03459 1.05511 1.20787 0.96730 0.97091 0.81898 0.85956 1.44618 1.72366 1.12799 1.06022 1.17727 0.92915 0.91822 0.84973 1.20852 1.08855 0.92177 0.99516 1.21040 0.96845 1.00813 0.89258 1.19028 1.09034 0.89931 0.87866 1.18913 0.98247 0.90645 0.86293 1.20472 1.10952 1.01364 0.90589 1.86274 1.35917 1.63181 1.40789 1.22892 0.82030 0.99079 0.98279 1.22440 1.04499 0.94902 0.99983 1.22885 0.82015 0.98794 0.98958 1.86380 1.28411 1.74586 1.35869 1.21276 0.80171 0.84817 0.85819 1.90638 1.40421 1.29450 1.86903 1.48069 1.49840 1.29507 1.05769 1.22237 0.94437 0.86370 1.04222 1.18785 0.93823 0.91709 0.81931 1.21690 1.05907 1.19097 1.11397 0.92827 1.25848 1.01761 0.95233 0.96312 1.70041 1.40744 1.27163 1.18819 0.85429 0.78779 0.78344 0.78349 1.18660 1.20803 1.19868 0.93122 0.88128 0.89073 0.76186 0.82877 0.82517 0.85504 0.92534 0.86189 0.86381 0.90662 0.92473 0.85969 0.90095 0.91252 0.88341 0.95396 0.98466 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.32 9.06 71.98 0.65 -2.67 16 2 C 0.14 3.81 1.87 44.24 0.08 3.89 16 3 H 0.12 2.69 5.74 -2.39 -0.01 2.67 16 4 N -0.73 -20.40 5.13 -322.34 -1.65 -22.06 16 5 C 0.23 5.84 6.64 38.16 0.25 6.09 16 6 C -0.19 -3.98 8.85 22.44 0.20 -3.78 16 7 C -0.06 -1.23 10.00 22.34 0.22 -1.01 16 8 C -0.01 -0.32 5.73 22.44 0.13 -0.19 16 9 C 0.10 2.74 5.73 22.44 0.13 2.87 16 10 C -0.21 -5.64 9.85 22.48 0.22 -5.42 16 11 O -0.34 -8.88 10.16 -84.17 -0.86 -9.73 16 12 C 0.05 0.89 6.51 71.67 0.47 1.36 16 13 C -0.18 -2.41 5.92 29.97 0.18 -2.23 16 14 C 0.05 0.74 6.51 71.67 0.47 1.20 16 15 O -0.34 -7.70 10.17 -85.63 -0.87 -8.57 16 16 C 0.49 19.37 7.14 87.66 0.63 20.00 16 17 O -0.59 -29.76 15.42 -3.04 -0.05 -29.80 16 18 N -0.60 -23.91 2.86 -851.11 -2.43 -26.35 16 19 C 0.07 1.79 8.80 127.77 1.12 2.92 16 20 C 0.26 13.58 5.16 85.63 0.44 14.02 16 21 C -0.54 -30.65 9.39 25.60 0.24 -30.41 16 22 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 23 C 0.01 0.43 5.46 84.66 0.46 0.89 16 24 N -0.93 -55.56 13.29 21.45 0.28 -55.28 16 25 Si 0.97 44.38 29.54 68.60 2.03 46.40 16 26 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 28 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 29 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.10 1.62 4.53 -2.39 -0.01 1.61 16 31 H 0.09 1.43 7.69 -2.39 -0.02 1.42 16 32 H 0.40 12.70 7.80 -92.71 -0.72 11.98 16 33 H 0.15 2.42 6.08 -2.91 -0.02 2.40 16 34 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 35 H 0.13 3.39 8.06 -2.91 -0.02 3.36 16 36 H 0.06 0.98 7.93 -2.39 -0.02 0.96 16 37 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.12 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 0.85 7.93 -2.38 -0.02 0.83 16 41 H 0.12 1.23 8.14 -2.38 -0.02 1.22 16 42 H 0.08 1.66 6.95 -2.38 -0.02 1.64 16 43 H 0.07 1.93 8.07 -2.39 -0.02 1.92 16 44 H 0.10 1.80 6.01 -2.39 -0.01 1.79 16 45 H 0.03 1.48 8.07 -2.38 -0.02 1.46 16 46 H 0.00 -0.17 7.42 -2.39 -0.02 -0.19 16 47 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -77.63 377.69 2.62 -75.01 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.27 Total: 22.84 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 5.89 Total: 7.54 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -3.80 Total: -103.68 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -1.77 Total: -48.11 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -77.63 2.62 -75.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070823792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.518 kcal (2) G-P(sol) polarization free energy of solvation -77.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds