Wall clock time and date at job start Tue Mar 31 2020 18:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.46920 * 2 1 4 4 C 1.47006 * 111.00019 * 66.04742 * 3 2 1 5 5 C 1.53097 * 109.25965 * 182.38613 * 4 3 2 6 6 O 1.43018 * 109.26027 * 303.15594 * 5 4 3 7 7 C 1.43014 * 113.74028 * 58.66595 * 6 5 4 8 8 H 1.09002 * 109.50423 * 61.31058 * 7 6 5 9 9 C 1.50697 * 109.50484 * 181.39429 * 7 6 5 10 10 O 1.21275 * 120.00191 * 5.00558 * 9 7 6 11 11 N 1.34774 * 119.99755 * 184.99677 * 9 7 6 12 12 C 1.46504 * 120.00188 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.47151 * 180.02562 * 12 11 9 14 14 C 1.38301 * 119.92956 * 269.72453 * 13 12 11 15 15 C 1.38098 * 120.06780 * 179.72754 * 14 13 12 16 16 C 1.38887 * 119.92892 * 0.56813 * 15 14 13 17 17 O 1.35744 * 120.06916 * 179.67980 * 16 15 14 18 18 C 1.34831 * 117.00012 * 174.48730 * 17 16 15 19 19 H 1.07991 * 119.99963 * 5.06333 * 18 17 16 20 20 C 1.38654 * 119.99844 * 185.05926 * 18 17 16 21 21 N 1.31555 * 120.00140 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00089 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47122 * 90.00204 * 22 20 18 24 24 H 1.48505 * 109.47020 * 209.99971 * 22 20 18 25 25 H 1.48499 * 109.47056 * 329.99880 * 22 20 18 26 26 C 1.38875 * 119.85819 * 359.70889 * 16 15 14 27 27 C 1.38093 * 119.93484 * 359.97438 * 26 16 15 28 28 C 1.47015 * 110.99549 * 189.68263 * 3 2 1 29 29 H 1.09002 * 109.47393 * 300.00084 * 1 2 3 30 30 H 1.09001 * 109.47346 * 59.99791 * 1 2 3 31 31 H 1.09000 * 109.47479 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46810 * 240.00402 * 2 1 3 33 33 H 1.08998 * 109.46874 * 120.00364 * 2 1 3 34 34 H 1.08994 * 109.51095 * 302.32792 * 4 3 2 35 35 H 1.09009 * 109.50565 * 62.41408 * 4 3 2 36 36 H 1.09001 * 109.50310 * 63.08818 * 5 4 3 37 37 H 1.09000 * 109.50567 * 183.21463 * 5 4 3 38 38 H 0.97007 * 119.99913 * 0.02562 * 11 9 7 39 39 H 1.08995 * 109.46931 * 300.00353 * 12 11 9 40 40 H 1.08995 * 109.47190 * 60.00162 * 12 11 9 41 41 H 1.07999 * 119.96288 * 359.97438 * 14 13 12 42 42 H 1.07999 * 120.03862 * 180.27144 * 15 14 13 43 43 H 0.96994 * 120.00673 * 180.02562 * 21 20 18 44 44 H 1.08003 * 120.02776 * 179.97438 * 26 16 15 45 45 H 1.08002 * 119.96752 * 180.02562 * 27 26 16 46 46 H 1.09003 * 109.50765 * 297.53953 * 28 3 2 47 47 H 1.08994 * 109.50918 * 57.67337 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6699 2.0674 1.2542 5 6 2.1453 3.5212 1.1877 6 8 3.5522 3.5462 0.9317 7 6 3.9282 2.8909 -0.2825 8 1 3.4555 3.3913 -1.1277 9 6 5.4260 2.9438 -0.4399 10 8 6.1128 3.4074 0.4456 11 7 6.0023 2.4759 -1.5648 12 6 7.4585 2.5268 -1.7177 13 6 7.8439 1.9466 -3.0541 14 6 8.1162 0.5954 -3.1670 15 6 8.4641 0.0597 -4.3914 16 6 8.5520 0.8816 -5.5076 17 8 8.9001 0.3591 -6.7111 18 6 8.8557 1.1876 -7.7740 19 1 8.6328 2.2348 -7.6333 20 6 9.0964 0.6949 -9.0475 21 7 9.0537 1.5033 -10.0845 22 14 9.4815 -1.1167 -9.2908 23 1 8.2183 -1.8663 -9.5091 24 1 10.3650 -1.2805 -10.4732 25 1 10.1675 -1.6434 -8.0836 26 6 8.2835 2.2390 -5.3896 27 6 7.9297 2.7674 -4.1638 28 6 3.4708 1.4307 -0.2308 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.5890 2.0439 1.3923 35 1 2.1547 1.5632 2.0903 36 1 1.6202 4.0394 0.3854 37 1 1.9392 4.0153 2.1372 38 1 5.4529 2.1053 -2.2732 39 1 7.7936 3.5624 -1.6612 40 1 7.9278 1.9492 -0.9214 41 1 8.0527 -0.0421 -2.2976 42 1 8.6724 -0.9963 -4.4800 43 1 9.2217 1.1587 -10.9754 44 1 8.3514 2.8806 -6.2557 45 1 7.7204 3.8230 -4.0715 46 1 3.9850 0.9168 0.5814 47 1 3.7045 0.9424 -1.1769 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073312219.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:40 Heat of formation + Delta-G solvation = -73.121541 kcal Electronic energy + Delta-G solvation = -28027.129136 eV Core-core repulsion = 23982.930525 eV Total energy + Delta-G solvation = -4044.198611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.59583 -39.45045 -38.84844 -37.07612 -36.45037 -34.52898 -32.55045 -32.17485 -31.27572 -30.42367 -30.04514 -27.50975 -25.96185 -24.88636 -24.37007 -22.80925 -22.21576 -20.95657 -20.66142 -20.42766 -18.04179 -17.82845 -17.33000 -16.97186 -16.47241 -15.94809 -15.66717 -15.42246 -15.10973 -15.01727 -14.64119 -14.45838 -14.22693 -14.05891 -13.91048 -13.89333 -13.49402 -13.11631 -12.90560 -12.75051 -12.48661 -12.36603 -12.29641 -12.16938 -12.01764 -11.81466 -11.52156 -11.29318 -11.13523 -10.98370 -10.87281 -10.80188 -10.24936 -10.06051 -9.81350 -9.51189 -9.07917 -8.97476 -8.87784 -8.41327 -7.51300 -6.52237 -4.19316 1.88754 1.99571 2.47223 2.82391 3.15188 3.18867 3.29468 3.32835 3.82172 4.14498 4.32928 4.40165 4.46706 4.51324 4.65801 4.70216 4.71905 4.81982 4.87400 4.99568 5.01402 5.05580 5.10661 5.14951 5.25805 5.30788 5.33777 5.46751 5.47483 5.52687 5.55704 5.69032 5.78544 5.82143 6.00136 6.21371 6.36413 6.42965 6.44074 6.48837 6.64564 6.71677 6.86881 7.09111 7.15754 7.45741 7.48210 7.68259 7.91716 8.14310 8.82174 9.42573 10.54866 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015415 B = 0.002191 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.922757 B =12774.026474 C =13777.126022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 N -0.535 5.535 4 C 0.012 3.988 5 C 0.062 3.938 6 O -0.356 6.356 7 C 0.078 3.922 8 H 0.094 0.906 9 C 0.518 3.482 10 O -0.523 6.523 11 N -0.718 5.718 12 C 0.179 3.821 13 C -0.207 4.207 14 C -0.056 4.056 15 C -0.195 4.195 16 C 0.167 3.833 17 O -0.212 6.212 18 C -0.392 4.392 19 H 0.108 0.892 20 C 0.065 3.935 21 N -0.875 5.875 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.281 1.281 25 H -0.259 1.259 26 C -0.224 4.224 27 C -0.051 4.051 28 C 0.029 3.971 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.403 0.597 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.281 0.719 44 H 0.135 0.865 45 H 0.112 0.888 46 H 0.050 0.950 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.483 -1.240 19.489 24.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.261 5.261 4 C -0.116 4.116 5 C -0.015 4.015 6 O -0.274 6.274 7 C 0.016 3.984 8 H 0.111 0.889 9 C 0.301 3.699 10 O -0.398 6.398 11 N -0.372 5.372 12 C 0.057 3.943 13 C -0.208 4.208 14 C -0.075 4.075 15 C -0.215 4.215 16 C 0.114 3.886 17 O -0.116 6.116 18 C -0.467 4.467 19 H 0.125 0.875 20 C -0.139 4.139 21 N -0.512 5.512 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.183 1.183 26 C -0.243 4.243 27 C -0.070 4.070 28 C -0.099 4.099 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.237 0.763 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.091 0.909 44 H 0.152 0.848 45 H 0.130 0.870 46 H 0.068 0.932 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.954 -0.761 19.550 24.625 hybrid contribution 0.052 -1.339 -0.266 1.366 sum -14.902 -2.100 19.285 24.461 Atomic orbital electron populations 1.21800 0.94465 1.01849 1.02547 1.22125 0.96386 0.88023 1.01308 1.62253 1.12630 1.16674 1.34522 1.22892 1.02022 0.95836 0.90853 1.22752 0.81435 0.95053 1.02232 1.88127 1.23128 1.76504 1.39621 1.21954 0.93048 0.93424 0.89951 0.88877 1.20041 0.88874 0.78455 0.82490 1.90722 1.64274 1.44216 1.40618 1.46248 1.08840 1.63094 1.19000 1.20018 0.78747 1.00842 0.94661 1.19257 1.12898 0.94347 0.94342 1.20529 0.97001 0.93934 0.96001 1.20211 1.10566 0.99358 0.91321 1.19187 0.91496 0.91752 0.86194 1.83573 1.74604 1.39934 1.13520 1.20789 1.49888 0.93003 0.83043 0.87467 1.24492 0.95718 1.00048 0.93679 1.69636 1.46490 1.35886 0.99151 0.86175 0.79037 0.83233 0.78439 1.19797 1.20667 1.18320 1.21282 1.08897 0.95482 0.98637 1.20709 0.96103 0.98472 0.91729 1.22666 0.88436 0.95897 1.02917 0.92708 0.91601 0.92033 0.90207 0.94619 0.89082 0.93711 0.91929 0.87871 0.76267 0.91248 0.91330 0.86787 0.86373 0.90874 0.84763 0.87028 0.93185 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.84 37.16 0.37 -0.47 16 2 C 0.05 0.33 5.68 -3.82 -0.02 0.31 16 3 N -0.54 -4.34 4.73 -234.31 -1.11 -5.44 16 4 C 0.01 0.09 5.43 -3.72 -0.02 0.07 16 5 C 0.06 0.51 7.01 37.21 0.26 0.77 16 6 O -0.36 -4.32 10.01 -55.06 -0.55 -4.87 16 7 C 0.08 0.83 3.22 -27.83 -0.09 0.74 16 8 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 9 C 0.52 6.80 7.18 -10.99 -0.08 6.72 16 10 O -0.52 -9.09 16.51 -14.27 -0.24 -9.33 16 11 N -0.72 -8.32 5.51 -61.47 -0.34 -8.66 16 12 C 0.18 2.33 5.80 -5.19 -0.03 2.30 16 13 C -0.21 -3.05 5.25 -104.58 -0.55 -3.60 16 14 C -0.06 -0.85 9.69 -39.61 -0.38 -1.23 16 15 C -0.20 -3.53 9.99 -39.39 -0.39 -3.93 16 16 C 0.17 3.59 6.65 -39.11 -0.26 3.33 16 17 O -0.21 -5.32 8.59 0.06 0.00 -5.32 16 18 C -0.39 -10.58 9.95 30.89 0.31 -10.28 16 19 H 0.11 2.95 5.44 -52.49 -0.29 2.67 16 20 C 0.06 1.75 5.49 -17.52 -0.10 1.66 16 21 N -0.87 -24.48 13.96 55.48 0.77 -23.70 16 22 Si 0.91 20.88 28.62 -169.99 -4.86 16.02 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.26 -5.99 7.11 56.52 0.40 -5.59 16 26 C -0.22 -4.46 9.17 -39.40 -0.36 -4.82 16 27 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 28 C 0.03 0.26 4.89 -3.71 -0.02 0.25 16 29 H 0.05 0.28 6.51 -51.93 -0.34 -0.05 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.53 8.04 -51.93 -0.42 0.11 16 33 H 0.04 0.25 8.12 -51.93 -0.42 -0.18 16 34 H 0.09 0.51 6.37 -51.93 -0.33 0.18 16 35 H 0.04 0.36 8.14 -51.92 -0.42 -0.06 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.40 3.97 8.35 -40.82 -0.34 3.63 16 39 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 40 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 41 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 43 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.13 2.85 5.64 -52.48 -0.30 2.56 16 45 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 46 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.09 0.73 7.97 -51.93 -0.41 0.32 16 LS Contribution 386.25 15.07 5.82 5.82 Total: -1.00 -31.30 386.25 -9.30 -40.61 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.05 Total: 4.29 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -1.75 Total: -9.41 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.67 Total: -37.80 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.79 Total: -19.52 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.86 Total: 16.02 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.30 -9.30 -40.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073312219.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.516 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds