Wall clock time and date at job start Tue Mar 31 2020 18:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.46920 * 2 1 4 4 C 1.47006 * 111.00019 * 66.04742 * 3 2 1 5 5 C 1.53097 * 109.25965 * 182.38613 * 4 3 2 6 6 O 1.43018 * 109.26027 * 303.15594 * 5 4 3 7 7 C 1.43014 * 113.74028 * 58.66595 * 6 5 4 8 8 H 1.09002 * 109.50423 * 61.31058 * 7 6 5 9 9 C 1.50697 * 109.50484 * 181.39429 * 7 6 5 10 10 O 1.21275 * 120.00191 * 5.00558 * 9 7 6 11 11 N 1.34774 * 119.99755 * 184.99677 * 9 7 6 12 12 C 1.46504 * 120.00188 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.47151 * 180.02562 * 12 11 9 14 14 C 1.38301 * 119.92956 * 269.72453 * 13 12 11 15 15 C 1.38098 * 120.06780 * 179.72754 * 14 13 12 16 16 C 1.38887 * 119.92892 * 0.56813 * 15 14 13 17 17 O 1.35744 * 120.06916 * 179.67980 * 16 15 14 18 18 C 1.34831 * 117.00012 * 174.48730 * 17 16 15 19 19 H 1.07991 * 119.99963 * 5.06333 * 18 17 16 20 20 C 1.38654 * 119.99844 * 185.05926 * 18 17 16 21 21 N 1.31555 * 120.00140 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00089 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47122 * 90.00204 * 22 20 18 24 24 H 1.48505 * 109.47020 * 209.99971 * 22 20 18 25 25 H 1.48499 * 109.47056 * 329.99880 * 22 20 18 26 26 C 1.38875 * 119.85819 * 359.70889 * 16 15 14 27 27 C 1.38093 * 119.93484 * 359.97438 * 26 16 15 28 28 C 1.47015 * 110.99549 * 189.68263 * 3 2 1 29 29 H 1.09002 * 109.47393 * 300.00084 * 1 2 3 30 30 H 1.09001 * 109.47346 * 59.99791 * 1 2 3 31 31 H 1.09000 * 109.47479 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46810 * 240.00402 * 2 1 3 33 33 H 1.08998 * 109.46874 * 120.00364 * 2 1 3 34 34 H 1.08994 * 109.51095 * 302.32792 * 4 3 2 35 35 H 1.09009 * 109.50565 * 62.41408 * 4 3 2 36 36 H 1.09001 * 109.50310 * 63.08818 * 5 4 3 37 37 H 1.09000 * 109.50567 * 183.21463 * 5 4 3 38 38 H 0.97007 * 119.99913 * 0.02562 * 11 9 7 39 39 H 1.08995 * 109.46931 * 300.00353 * 12 11 9 40 40 H 1.08995 * 109.47190 * 60.00162 * 12 11 9 41 41 H 1.07999 * 119.96288 * 359.97438 * 14 13 12 42 42 H 1.07999 * 120.03862 * 180.27144 * 15 14 13 43 43 H 0.96994 * 120.00673 * 180.02562 * 21 20 18 44 44 H 1.08003 * 120.02776 * 179.97438 * 26 16 15 45 45 H 1.08002 * 119.96752 * 180.02562 * 27 26 16 46 46 H 1.09003 * 109.50765 * 297.53953 * 28 3 2 47 47 H 1.08994 * 109.50918 * 57.67337 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6699 2.0674 1.2542 5 6 2.1453 3.5212 1.1877 6 8 3.5522 3.5462 0.9317 7 6 3.9282 2.8909 -0.2825 8 1 3.4555 3.3913 -1.1277 9 6 5.4260 2.9438 -0.4399 10 8 6.1128 3.4074 0.4456 11 7 6.0023 2.4759 -1.5648 12 6 7.4585 2.5268 -1.7177 13 6 7.8439 1.9466 -3.0541 14 6 8.1162 0.5954 -3.1670 15 6 8.4641 0.0597 -4.3914 16 6 8.5520 0.8816 -5.5076 17 8 8.9001 0.3591 -6.7111 18 6 8.8557 1.1876 -7.7740 19 1 8.6328 2.2348 -7.6333 20 6 9.0964 0.6949 -9.0475 21 7 9.0537 1.5033 -10.0845 22 14 9.4815 -1.1167 -9.2908 23 1 8.2183 -1.8663 -9.5091 24 1 10.3650 -1.2805 -10.4732 25 1 10.1675 -1.6434 -8.0836 26 6 8.2835 2.2390 -5.3896 27 6 7.9297 2.7674 -4.1638 28 6 3.4708 1.4307 -0.2308 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.5890 2.0439 1.3923 35 1 2.1547 1.5632 2.0903 36 1 1.6202 4.0394 0.3854 37 1 1.9392 4.0153 2.1372 38 1 5.4529 2.1053 -2.2732 39 1 7.7936 3.5624 -1.6612 40 1 7.9278 1.9492 -0.9214 41 1 8.0527 -0.0421 -2.2976 42 1 8.6724 -0.9963 -4.4800 43 1 9.2217 1.1587 -10.9754 44 1 8.3514 2.8806 -6.2557 45 1 7.7204 3.8230 -4.0715 46 1 3.9850 0.9168 0.5814 47 1 3.7045 0.9424 -1.1769 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073312219.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:39 Heat of formation + Delta-G solvation = -94.658518 kcal Electronic energy + Delta-G solvation = -28028.063049 eV Core-core repulsion = 23982.930525 eV Total energy + Delta-G solvation = -4045.132524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.49333 -40.92107 -39.87013 -38.57670 -37.16467 -35.73007 -34.45460 -33.04900 -31.87078 -31.82742 -31.30909 -28.41805 -27.49210 -26.03150 -25.31994 -23.72022 -23.47027 -22.09302 -21.66225 -21.33665 -19.84714 -19.17449 -18.63109 -17.87023 -17.20167 -16.86670 -16.59044 -16.51726 -16.21707 -16.17610 -15.79661 -15.66627 -15.53103 -15.29111 -15.18240 -14.89130 -14.57371 -14.39286 -14.26816 -14.06767 -13.87407 -13.40962 -13.11398 -13.03306 -12.87475 -12.73266 -12.58830 -12.49719 -12.46520 -12.33780 -11.94114 -11.79173 -11.77660 -11.30198 -10.97840 -10.85790 -10.74939 -10.15115 -9.83374 -9.49613 -9.09833 -8.50598 -6.23673 0.47252 0.55007 1.32931 1.35919 1.46227 1.52575 1.86758 2.27717 2.65660 2.74493 2.99590 3.09180 3.18075 3.63598 3.71518 3.84419 3.89538 3.96018 4.01015 4.05643 4.14236 4.25268 4.29464 4.42746 4.49583 4.49754 4.54392 4.60564 4.65324 4.71942 4.73335 4.81052 4.88774 4.95528 4.99514 5.08632 5.22284 5.32533 5.34100 5.35250 5.53957 5.70587 5.78967 5.82981 5.88329 5.92539 5.99671 6.19103 6.49907 6.83559 7.14149 7.56471 8.60657 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015415 B = 0.002191 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.922757 B =12774.026474 C =13777.126022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.047 3.953 3 N -0.539 5.539 4 C 0.014 3.986 5 C 0.058 3.942 6 O -0.388 6.388 7 C 0.082 3.918 8 H 0.108 0.892 9 C 0.520 3.480 10 O -0.568 6.568 11 N -0.706 5.706 12 C 0.183 3.817 13 C -0.174 4.174 14 C -0.043 4.043 15 C -0.191 4.191 16 C 0.130 3.870 17 O -0.242 6.242 18 C -0.399 4.399 19 H 0.083 0.917 20 C 0.010 3.990 21 N -0.922 5.922 22 Si 0.970 3.030 23 H -0.265 1.265 24 H -0.270 1.270 25 H -0.262 1.262 26 C -0.238 4.238 27 C -0.049 4.049 28 C 0.035 3.965 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.034 0.966 34 H 0.110 0.890 35 H 0.036 0.964 36 H 0.070 0.930 37 H 0.118 0.882 38 H 0.414 0.586 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.155 0.845 42 H 0.131 0.869 43 H 0.285 0.715 44 H 0.109 0.891 45 H 0.134 0.866 46 H 0.037 0.963 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.019 -2.590 22.016 27.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.080 4.080 3 N -0.265 5.265 4 C -0.114 4.114 5 C -0.018 4.018 6 O -0.306 6.306 7 C 0.020 3.980 8 H 0.126 0.874 9 C 0.306 3.694 10 O -0.447 6.447 11 N -0.360 5.360 12 C 0.061 3.939 13 C -0.175 4.175 14 C -0.062 4.062 15 C -0.210 4.210 16 C 0.080 3.920 17 O -0.149 6.149 18 C -0.476 4.476 19 H 0.101 0.899 20 C -0.188 4.188 21 N -0.562 5.562 22 Si 0.792 3.208 23 H -0.189 1.189 24 H -0.195 1.195 25 H -0.186 1.186 26 C -0.257 4.257 27 C -0.068 4.068 28 C -0.094 4.094 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.052 0.948 34 H 0.128 0.872 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.136 0.864 38 H 0.251 0.749 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.172 0.828 42 H 0.149 0.851 43 H 0.095 0.905 44 H 0.127 0.873 45 H 0.152 0.848 46 H 0.055 0.945 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.526 -2.115 22.105 27.681 hybrid contribution 0.406 -0.777 -0.654 1.093 sum -16.120 -2.892 21.452 26.989 Atomic orbital electron populations 1.21770 0.93478 1.02481 1.02515 1.22190 0.97172 0.87281 1.01365 1.62299 1.11828 1.17490 1.34867 1.22913 1.03061 0.95138 0.90268 1.22978 0.79668 0.95857 1.03342 1.88084 1.25416 1.76949 1.40192 1.21946 0.91155 0.94657 0.90211 0.87414 1.20455 0.89845 0.77288 0.81830 1.90704 1.65449 1.46328 1.42190 1.46036 1.08314 1.62577 1.19053 1.19946 0.79680 1.00938 0.93384 1.19491 1.09439 0.94097 0.94439 1.20946 0.94770 0.94402 0.96053 1.20518 1.09601 0.99857 0.91059 1.19753 0.93155 0.92975 0.86125 1.83522 1.77610 1.39686 1.14048 1.20707 1.50047 0.92488 0.84309 0.89943 1.25289 0.95922 1.04294 0.93333 1.69723 1.49089 1.37726 0.99679 0.85221 0.79134 0.78084 0.78321 1.18942 1.19474 1.18592 1.21264 1.10050 0.95032 0.99396 1.20922 0.95227 0.99911 0.90732 1.22608 0.89044 0.94548 1.03165 0.92230 0.92077 0.91134 0.89970 0.94752 0.87152 0.94575 0.91125 0.86380 0.74921 0.91261 0.90316 0.82759 0.85066 0.90547 0.87308 0.84839 0.94487 0.87334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.84 71.98 0.71 -0.56 16 2 C 0.05 0.53 5.68 86.30 0.49 1.02 16 3 N -0.54 -7.42 4.73 -895.23 -4.23 -11.66 16 4 C 0.01 0.18 5.43 86.32 0.47 0.64 16 5 C 0.06 0.82 7.01 72.01 0.50 1.33 16 6 O -0.39 -8.83 10.01 -130.02 -1.30 -10.13 16 7 C 0.08 1.57 3.22 29.88 0.10 1.67 16 8 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 9 C 0.52 12.52 7.18 87.66 0.63 13.15 16 10 O -0.57 -18.94 16.51 15.95 0.26 -18.68 16 11 N -0.71 -14.08 5.51 -466.80 -2.57 -16.65 16 12 C 0.18 4.10 5.80 85.63 0.50 4.60 16 13 C -0.17 -4.52 5.25 -19.83 -0.10 -4.62 16 14 C -0.04 -1.14 9.69 22.25 0.22 -0.92 16 15 C -0.19 -6.52 9.99 22.39 0.22 -6.29 16 16 C 0.13 5.62 6.65 22.58 0.15 5.77 16 17 O -0.24 -12.49 8.59 -22.69 -0.19 -12.69 16 18 C -0.40 -22.70 9.95 67.92 0.68 -22.02 16 19 H 0.08 4.91 5.44 -2.92 -0.02 4.90 16 20 C 0.01 0.58 5.49 84.83 0.47 1.05 16 21 N -0.92 -53.89 13.96 21.61 0.30 -53.58 16 22 Si 0.97 44.00 28.62 68.60 1.96 45.97 16 23 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 26 C -0.24 -9.67 9.17 22.39 0.21 -9.46 16 27 C -0.05 -1.53 9.69 22.25 0.22 -1.32 16 28 C 0.04 0.55 4.89 86.32 0.42 0.97 16 29 H 0.06 0.46 6.51 -2.39 -0.02 0.44 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.08 0.88 8.04 -2.39 -0.02 0.86 16 33 H 0.03 0.40 8.12 -2.39 -0.02 0.38 16 34 H 0.11 0.94 6.37 -2.39 -0.02 0.93 16 35 H 0.04 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.41 6.63 8.35 -92.70 -0.77 5.86 16 39 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 40 H 0.08 1.72 8.08 -2.39 -0.02 1.70 16 41 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 42 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 43 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 44 H 0.11 4.96 5.64 -2.91 -0.02 4.94 16 45 H 0.13 3.56 8.06 -2.91 -0.02 3.53 16 46 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.11 1.34 7.97 -2.39 -0.02 1.32 16 Total: -1.00 -71.36 386.25 0.30 -71.07 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.21 Total: 21.37 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: 5.86 Total: -15.00 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -6.51 Total: -81.90 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -1.23 Total: -41.50 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.96 Total: 45.97 kcal Total: -71.36 0.30 -71.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073312219.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.593 kcal (2) G-P(sol) polarization free energy of solvation -71.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds