Wall clock time and date at job start Tue Mar 31 2020 18:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47228 * 2 1 4 4 N 1.46500 * 109.47274 * 119.99496 * 2 1 3 5 5 C 1.34782 * 120.00325 * 275.00577 * 4 2 1 6 6 O 1.21284 * 119.99610 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00099 * 179.97438 * 5 4 2 8 8 C 1.53003 * 109.46756 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47171 * 299.99305 * 7 5 4 10 10 C 1.52999 * 109.47120 * 59.99945 * 7 5 4 11 11 C 1.50699 * 109.47436 * 239.99706 * 2 1 3 12 12 O 1.21291 * 120.00075 * 239.99994 * 11 2 1 13 13 N 1.34770 * 120.00034 * 59.99829 * 11 2 1 14 14 C 1.39989 * 120.00055 * 174.56196 * 13 11 2 15 15 C 1.38923 * 120.00336 * 325.29294 * 14 13 11 16 16 C 1.38003 * 119.99957 * 180.23232 * 15 14 13 17 17 C 1.38910 * 120.00168 * 359.49180 * 16 15 14 18 18 O 1.35771 * 120.00176 * 180.25753 * 17 16 15 19 19 C 1.34813 * 117.00571 * 185.85979 * 18 17 16 20 20 H 1.08002 * 119.99301 * 5.36347 * 19 18 17 21 21 C 1.38632 * 120.00595 * 185.35756 * 19 18 17 22 22 N 1.31564 * 120.00125 * 179.97438 * 21 19 18 23 23 Si 1.86807 * 119.99484 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.46748 * 89.99943 * 23 21 19 25 25 H 1.48497 * 109.46887 * 209.99508 * 23 21 19 26 26 H 1.48499 * 109.47105 * 329.99634 * 23 21 19 27 27 C 1.38909 * 120.00141 * 0.50024 * 17 16 15 28 28 C 1.37999 * 120.00190 * 359.75587 * 27 17 16 29 29 H 1.08996 * 109.47177 * 300.00428 * 1 2 3 30 30 H 1.08994 * 109.46945 * 60.00695 * 1 2 3 31 31 H 1.09005 * 109.46827 * 180.02562 * 1 2 3 32 32 H 0.97004 * 119.99947 * 94.99583 * 4 2 1 33 33 H 1.09001 * 109.47024 * 59.99860 * 8 7 5 34 34 H 1.09001 * 109.46891 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.47566 * 300.00221 * 8 7 5 36 36 H 1.09001 * 109.46666 * 60.00637 * 9 7 5 37 37 H 1.09001 * 109.47058 * 180.02562 * 9 7 5 38 38 H 1.09001 * 109.47233 * 300.00522 * 9 7 5 39 39 H 1.08992 * 109.47544 * 60.00015 * 10 7 5 40 40 H 1.09001 * 109.47099 * 179.97438 * 10 7 5 41 41 H 1.09004 * 109.47026 * 299.99364 * 10 7 5 42 42 H 0.97003 * 120.00186 * 354.56153 * 13 11 2 43 43 H 1.07996 * 119.99981 * 359.94877 * 15 14 13 44 44 H 1.08002 * 120.00043 * 179.73967 * 16 15 14 45 45 H 0.97005 * 120.00252 * 180.02562 * 22 21 19 46 46 H 1.08001 * 119.99864 * 179.72767 * 27 17 16 47 47 H 1.07997 * 120.00181 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3572 6 8 1.8589 1.1588 2.4115 7 6 2.6488 -0.7286 3.5879 8 6 2.7009 0.2548 4.7588 9 6 1.7043 -1.8821 3.9316 10 6 4.0513 -1.2795 3.3224 11 6 2.0324 -0.7105 -1.2304 12 8 2.7297 -1.6966 -1.1190 13 7 1.7068 -0.2501 -2.4545 14 6 2.2645 -0.8397 -3.5951 15 6 3.5673 -1.3209 -3.5621 16 6 4.1185 -1.8978 -4.6880 17 6 3.3673 -2.0068 -5.8513 18 8 3.9079 -2.5791 -6.9575 19 6 3.1716 -2.5450 -8.0863 20 1 2.2380 -2.0023 -8.1058 21 6 3.6129 -3.2062 -9.2221 22 7 2.8941 -3.1733 -10.3235 23 14 5.2275 -4.1452 -9.1880 24 1 4.9755 -5.5481 -8.7712 25 1 5.8358 -4.1330 -10.5427 26 1 6.1545 -3.5009 -8.2233 27 6 2.0645 -1.5258 -5.8845 28 6 1.5149 -0.9441 -4.7602 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.2490 -1.6317 1.1527 33 1 1.7019 0.6477 4.9480 34 1 3.0643 -0.2589 5.6488 35 1 3.3739 1.0764 4.5138 36 1 1.6676 -2.5825 3.0973 37 1 2.0670 -2.3957 4.8220 38 1 0.7051 -1.4895 4.1207 39 1 4.7242 -0.4578 3.0776 40 1 4.4144 -1.7930 4.2127 41 1 4.0146 -1.9800 2.4881 42 1 1.0861 0.4898 -2.5452 43 1 4.1501 -1.2395 -2.6566 44 1 5.1328 -2.2682 -4.6636 45 1 3.2026 -3.6363 -11.1181 46 1 1.4820 -1.6066 -6.7903 47 1 0.5022 -0.5698 -4.7861 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073766054.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:34 Heat of formation + Delta-G solvation = -82.554822 kcal Electronic energy + Delta-G solvation = -28200.010350 eV Core-core repulsion = 24155.402681 eV Total energy + Delta-G solvation = -4044.607669 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.95326 -40.02227 -38.91674 -36.88253 -36.03569 -35.20918 -34.24412 -32.39023 -31.02054 -30.38386 -28.14354 -27.75723 -27.48461 -25.53596 -24.93370 -23.13020 -22.40922 -21.31993 -20.26950 -19.83185 -18.07741 -17.87734 -17.42816 -16.98225 -16.35781 -16.21911 -15.55267 -15.15847 -14.88310 -14.75870 -14.27229 -14.15838 -13.93816 -13.87281 -13.77450 -13.70783 -12.99209 -12.89751 -12.78203 -12.62829 -12.58016 -12.41676 -12.29707 -12.28494 -12.09736 -11.98140 -11.87035 -11.71612 -11.35637 -11.31899 -10.98706 -10.80394 -10.21576 -10.03009 -9.96769 -9.77002 -9.46975 -9.34660 -8.82740 -8.37131 -7.14140 -6.46171 -4.11987 1.85439 2.03427 2.32480 2.55447 2.67822 3.20065 3.22600 3.24688 3.38670 4.19338 4.20630 4.33040 4.38109 4.45679 4.47791 4.69016 4.79495 4.83768 4.85083 5.04575 5.16203 5.18683 5.22110 5.32799 5.39890 5.42414 5.43436 5.48116 5.53918 5.61481 5.70597 5.75945 5.81749 5.90760 5.96168 6.02489 6.04221 6.11913 6.57293 6.67168 6.82416 6.97948 7.16134 7.19206 7.46675 7.50767 7.72341 7.90965 7.96362 8.10833 8.88967 9.50782 10.61194 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026523 B = 0.002057 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.419726 B =13610.746623 C =14290.221187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.126 3.874 3 H 0.115 0.885 4 N -0.711 5.711 5 C 0.527 3.473 6 O -0.541 6.541 7 C -0.085 4.085 8 C -0.127 4.127 9 C -0.142 4.142 10 C -0.143 4.143 11 C 0.504 3.496 12 O -0.523 6.523 13 N -0.654 5.654 14 C 0.042 3.958 15 C -0.067 4.067 16 C -0.177 4.177 17 C 0.153 3.847 18 O -0.214 6.214 19 C -0.390 4.390 20 H 0.107 0.893 21 C 0.063 3.937 22 N -0.878 5.878 23 Si 0.905 3.095 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.206 4.206 28 C -0.089 4.089 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.410 0.590 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.405 0.595 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.280 0.720 46 H 0.138 0.862 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.559 5.428 26.154 26.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.017 3.983 3 H 0.133 0.867 4 N -0.365 5.365 5 C 0.314 3.686 6 O -0.417 6.417 7 C -0.088 4.088 8 C -0.185 4.185 9 C -0.199 4.199 10 C -0.201 4.201 11 C 0.290 3.710 12 O -0.399 6.399 13 N -0.299 5.299 14 C -0.051 4.051 15 C -0.087 4.087 16 C -0.197 4.197 17 C 0.101 3.899 18 O -0.119 6.119 19 C -0.465 4.465 20 H 0.124 0.876 21 C -0.140 4.140 22 N -0.515 5.515 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.207 1.207 26 H -0.183 1.183 27 C -0.226 4.226 28 C -0.109 4.109 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.248 0.752 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.240 0.760 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.090 0.910 46 H 0.156 0.844 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.056 5.395 26.002 26.731 hybrid contribution 0.204 -0.482 -0.417 0.669 sum -2.853 4.913 25.584 26.208 Atomic orbital electron populations 1.22145 0.92750 1.03333 1.03642 1.20745 0.95761 0.98102 0.83694 0.86708 1.45792 1.67351 1.14962 1.08352 1.20622 0.76756 0.87020 0.84235 1.90691 1.50001 1.15955 1.85058 1.20813 0.97344 0.97057 0.93605 1.21665 1.03031 0.98164 0.95596 1.21885 0.98884 0.96652 1.02506 1.21897 0.94013 1.01442 1.02729 1.20576 0.81123 0.84646 0.84648 1.90720 1.37665 1.25252 1.86224 1.43158 1.46708 1.35704 1.04298 1.17264 0.93596 1.07582 0.86611 1.20545 0.92934 0.97855 0.97403 1.20110 1.00484 1.07639 0.91468 1.19163 0.91425 0.92227 0.87109 1.83596 1.43929 1.68096 1.16303 1.20752 1.06282 1.33932 0.85534 0.87617 1.24475 0.99092 0.96549 0.93904 1.69648 1.38042 1.42089 1.01738 0.86177 0.82752 0.80279 0.77701 1.19862 1.20746 1.18290 1.21111 0.96272 1.05579 0.99590 1.20539 0.98155 0.99992 0.92189 0.90730 0.90850 0.91555 0.75201 0.91922 0.91936 0.91886 0.91935 0.91169 0.91995 0.91955 0.91206 0.91691 0.75988 0.85840 0.86073 0.90995 0.84397 0.86763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.38 37.16 0.35 -0.90 16 2 C 0.13 1.22 2.99 -69.08 -0.21 1.01 16 3 H 0.12 1.13 7.58 -51.93 -0.39 0.74 16 4 N -0.71 -6.83 4.74 -54.93 -0.26 -7.09 16 5 C 0.53 5.35 6.45 -10.98 -0.07 5.28 16 6 O -0.54 -7.12 15.64 5.55 0.09 -7.03 16 7 C -0.09 -0.64 0.87 -155.66 -0.14 -0.77 16 8 C -0.13 -0.92 7.76 37.16 0.29 -0.63 16 9 C -0.14 -0.83 8.37 37.16 0.31 -0.52 16 10 C -0.14 -0.96 8.37 37.16 0.31 -0.65 16 11 C 0.50 6.25 6.95 -10.99 -0.08 6.18 16 12 O -0.52 -8.18 13.63 5.55 0.08 -8.11 16 13 N -0.65 -7.95 5.26 -9.82 -0.05 -8.00 16 14 C 0.04 0.68 6.25 -83.62 -0.52 0.15 16 15 C -0.07 -1.21 8.64 -39.41 -0.34 -1.55 16 16 C -0.18 -3.54 9.98 -39.42 -0.39 -3.94 16 17 C 0.15 3.47 6.65 -39.08 -0.26 3.21 16 18 O -0.21 -5.56 8.58 0.03 0.00 -5.56 16 19 C -0.39 -10.74 9.90 30.88 0.31 -10.43 16 20 H 0.11 2.95 5.52 -52.49 -0.29 2.66 16 21 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 22 N -0.88 -24.91 13.96 55.48 0.77 -24.14 16 23 Si 0.91 21.43 28.62 -169.99 -4.86 16.57 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 27 C -0.21 -4.24 9.13 -39.42 -0.36 -4.60 16 28 C -0.09 -1.49 9.96 -39.41 -0.39 -1.89 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.44 7.45 -51.93 -0.39 0.05 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.41 3.79 6.63 -40.82 -0.27 3.52 16 33 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 36 H 0.06 0.35 7.57 -51.93 -0.39 -0.04 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.45 7.56 -51.93 -0.39 0.05 16 42 H 0.40 3.53 8.09 -40.82 -0.33 3.20 16 43 H 0.12 2.14 6.52 -52.49 -0.34 1.79 16 44 H 0.12 2.28 8.06 -52.49 -0.42 1.85 16 45 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.14 2.96 5.70 -52.49 -0.30 2.66 16 47 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 389.14 15.07 5.86 5.86 Total: -1.00 -32.24 389.14 -6.54 -38.78 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.88 Total: 7.10 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -1.29 Total: -8.38 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.46 Total: -39.23 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: 0.16 Total: -20.70 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.86 Total: 16.57 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.24 -6.54 -38.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073766054.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.773 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds