Wall clock time and date at job start Tue Mar 31 2020 18:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47228 * 2 1 4 4 N 1.46500 * 109.47274 * 119.99496 * 2 1 3 5 5 C 1.34782 * 120.00325 * 275.00577 * 4 2 1 6 6 O 1.21284 * 119.99610 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00099 * 179.97438 * 5 4 2 8 8 C 1.53003 * 109.46756 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47171 * 299.99305 * 7 5 4 10 10 C 1.52999 * 109.47120 * 59.99945 * 7 5 4 11 11 C 1.50699 * 109.47436 * 239.99706 * 2 1 3 12 12 O 1.21291 * 120.00075 * 239.99994 * 11 2 1 13 13 N 1.34770 * 120.00034 * 59.99829 * 11 2 1 14 14 C 1.39989 * 120.00055 * 174.56196 * 13 11 2 15 15 C 1.38923 * 120.00336 * 325.29294 * 14 13 11 16 16 C 1.38003 * 119.99957 * 180.23232 * 15 14 13 17 17 C 1.38910 * 120.00168 * 359.49180 * 16 15 14 18 18 O 1.35771 * 120.00176 * 180.25753 * 17 16 15 19 19 C 1.34813 * 117.00571 * 185.85979 * 18 17 16 20 20 H 1.08002 * 119.99301 * 5.36347 * 19 18 17 21 21 C 1.38632 * 120.00595 * 185.35756 * 19 18 17 22 22 N 1.31564 * 120.00125 * 179.97438 * 21 19 18 23 23 Si 1.86807 * 119.99484 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.46748 * 89.99943 * 23 21 19 25 25 H 1.48497 * 109.46887 * 209.99508 * 23 21 19 26 26 H 1.48499 * 109.47105 * 329.99634 * 23 21 19 27 27 C 1.38909 * 120.00141 * 0.50024 * 17 16 15 28 28 C 1.37999 * 120.00190 * 359.75587 * 27 17 16 29 29 H 1.08996 * 109.47177 * 300.00428 * 1 2 3 30 30 H 1.08994 * 109.46945 * 60.00695 * 1 2 3 31 31 H 1.09005 * 109.46827 * 180.02562 * 1 2 3 32 32 H 0.97004 * 119.99947 * 94.99583 * 4 2 1 33 33 H 1.09001 * 109.47024 * 59.99860 * 8 7 5 34 34 H 1.09001 * 109.46891 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.47566 * 300.00221 * 8 7 5 36 36 H 1.09001 * 109.46666 * 60.00637 * 9 7 5 37 37 H 1.09001 * 109.47058 * 180.02562 * 9 7 5 38 38 H 1.09001 * 109.47233 * 300.00522 * 9 7 5 39 39 H 1.08992 * 109.47544 * 60.00015 * 10 7 5 40 40 H 1.09001 * 109.47099 * 179.97438 * 10 7 5 41 41 H 1.09004 * 109.47026 * 299.99364 * 10 7 5 42 42 H 0.97003 * 120.00186 * 354.56153 * 13 11 2 43 43 H 1.07996 * 119.99981 * 359.94877 * 15 14 13 44 44 H 1.08002 * 120.00043 * 179.73967 * 16 15 14 45 45 H 0.97005 * 120.00252 * 180.02562 * 22 21 19 46 46 H 1.08001 * 119.99864 * 179.72767 * 27 17 16 47 47 H 1.07997 * 120.00181 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3572 6 8 1.8589 1.1588 2.4115 7 6 2.6488 -0.7286 3.5879 8 6 2.7009 0.2548 4.7588 9 6 1.7043 -1.8821 3.9316 10 6 4.0513 -1.2795 3.3224 11 6 2.0324 -0.7105 -1.2304 12 8 2.7297 -1.6966 -1.1190 13 7 1.7068 -0.2501 -2.4545 14 6 2.2645 -0.8397 -3.5951 15 6 3.5673 -1.3209 -3.5621 16 6 4.1185 -1.8978 -4.6880 17 6 3.3673 -2.0068 -5.8513 18 8 3.9079 -2.5791 -6.9575 19 6 3.1716 -2.5450 -8.0863 20 1 2.2380 -2.0023 -8.1058 21 6 3.6129 -3.2062 -9.2221 22 7 2.8941 -3.1733 -10.3235 23 14 5.2275 -4.1452 -9.1880 24 1 4.9755 -5.5481 -8.7712 25 1 5.8358 -4.1330 -10.5427 26 1 6.1545 -3.5009 -8.2233 27 6 2.0645 -1.5258 -5.8845 28 6 1.5149 -0.9441 -4.7602 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.2490 -1.6317 1.1527 33 1 1.7019 0.6477 4.9480 34 1 3.0643 -0.2589 5.6488 35 1 3.3739 1.0764 4.5138 36 1 1.6676 -2.5825 3.0973 37 1 2.0670 -2.3957 4.8220 38 1 0.7051 -1.4895 4.1207 39 1 4.7242 -0.4578 3.0776 40 1 4.4144 -1.7930 4.2127 41 1 4.0146 -1.9800 2.4881 42 1 1.0861 0.4898 -2.5452 43 1 4.1501 -1.2395 -2.6566 44 1 5.1328 -2.2682 -4.6636 45 1 3.2026 -3.6363 -11.1181 46 1 1.4820 -1.6066 -6.7903 47 1 0.5022 -0.5698 -4.7861 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073766054.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:33 Heat of formation + Delta-G solvation = -103.920290 kcal Electronic energy + Delta-G solvation = -28200.936826 eV Core-core repulsion = 24155.402681 eV Total energy + Delta-G solvation = -4045.534145 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.94888 -41.12377 -40.41879 -38.38026 -36.71459 -36.10609 -35.55711 -34.37119 -31.95559 -31.85642 -29.58537 -28.23893 -28.03605 -27.25441 -25.91415 -24.16578 -23.87536 -22.61690 -21.36581 -20.71465 -19.77650 -19.23562 -18.84413 -18.05798 -17.28143 -17.26473 -16.63762 -16.38630 -16.08164 -15.90987 -15.66905 -15.49611 -15.32361 -14.81706 -14.77912 -14.57564 -14.47277 -14.18666 -14.09359 -13.72284 -13.54696 -13.34064 -13.28881 -13.23826 -13.08097 -12.88311 -12.78159 -12.68002 -12.62730 -12.50790 -11.98806 -11.91126 -11.86771 -11.47940 -11.21861 -10.97864 -10.77021 -10.67504 -10.26103 -9.89588 -8.71370 -8.49383 -6.20350 0.41636 0.48080 1.32461 1.34408 1.46382 1.52469 1.53050 1.73451 2.28536 2.30758 2.74795 3.08006 3.09990 3.40887 3.59530 3.82596 3.89675 3.97559 4.01264 4.05687 4.08516 4.26756 4.44575 4.53791 4.61708 4.68236 4.70198 4.71208 4.75836 4.82454 4.93987 4.95127 5.00966 5.02977 5.13036 5.14958 5.20683 5.27237 5.31750 5.34546 5.37880 5.46258 5.51901 5.75014 5.87535 6.15795 6.38087 6.42176 6.85245 7.03452 7.13159 7.59181 8.61733 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026523 B = 0.002057 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.419726 B =13610.746623 C =14290.221187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.132 3.868 3 H 0.118 0.882 4 N -0.709 5.709 5 C 0.525 3.475 6 O -0.574 6.574 7 C -0.083 4.083 8 C -0.125 4.125 9 C -0.139 4.139 10 C -0.141 4.141 11 C 0.510 3.490 12 O -0.552 6.552 13 N -0.644 5.644 14 C 0.072 3.928 15 C -0.073 4.073 16 C -0.176 4.176 17 C 0.114 3.886 18 O -0.244 6.244 19 C -0.396 4.396 20 H 0.087 0.913 21 C 0.011 3.989 22 N -0.920 5.920 23 Si 0.966 3.034 24 H -0.268 1.268 25 H -0.268 1.268 26 H -0.264 1.264 27 C -0.214 4.214 28 C -0.081 4.081 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.413 0.587 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.426 0.574 43 H 0.135 0.865 44 H 0.128 0.872 45 H 0.284 0.716 46 H 0.121 0.879 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.899 5.661 29.084 29.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.023 3.977 3 H 0.136 0.864 4 N -0.362 5.362 5 C 0.313 3.687 6 O -0.453 6.453 7 C -0.086 4.086 8 C -0.183 4.183 9 C -0.196 4.196 10 C -0.198 4.198 11 C 0.298 3.702 12 O -0.429 6.429 13 N -0.291 5.291 14 C -0.022 4.022 15 C -0.093 4.093 16 C -0.195 4.195 17 C 0.065 3.935 18 O -0.151 6.151 19 C -0.473 4.473 20 H 0.104 0.896 21 C -0.188 4.188 22 N -0.561 5.561 23 Si 0.789 3.211 24 H -0.193 1.193 25 H -0.192 1.192 26 H -0.188 1.188 27 C -0.234 4.234 28 C -0.101 4.101 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.251 0.749 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.266 0.734 43 H 0.152 0.848 44 H 0.146 0.854 45 H 0.094 0.906 46 H 0.139 0.861 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.428 5.658 28.982 29.727 hybrid contribution 0.191 -0.386 -0.962 1.054 sum -3.237 5.272 28.020 28.694 Atomic orbital electron populations 1.22141 0.90852 1.03704 1.04670 1.20757 0.97060 0.97568 0.82274 0.86430 1.45842 1.67062 1.15060 1.08266 1.21139 0.75991 0.86683 0.84927 1.90674 1.51589 1.17430 1.85608 1.20868 0.98057 0.97426 0.92291 1.21663 1.02246 0.97945 0.96437 1.21887 0.98322 0.96000 1.03422 1.21896 0.93262 1.01082 1.03605 1.21032 0.80037 0.84054 0.85118 1.90722 1.38859 1.26697 1.86660 1.43086 1.46847 1.36109 1.03036 1.17363 0.92713 1.04560 0.87545 1.20728 0.93857 0.97697 0.96971 1.20296 1.00779 1.07308 0.91147 1.19622 0.92890 0.93749 0.87246 1.83538 1.44416 1.70568 1.16617 1.20712 1.05864 1.33894 0.86793 0.89603 1.25230 1.02310 0.97661 0.93585 1.69723 1.39900 1.44002 1.02456 0.85274 0.78845 0.78936 0.78041 1.19310 1.19226 1.18806 1.21163 0.95682 1.06110 1.00407 1.20821 0.99789 0.98674 0.90849 0.91010 0.88600 0.91477 0.74865 0.92815 0.89700 0.93307 0.91657 0.89390 0.92283 0.93017 0.89247 0.91897 0.73440 0.84768 0.85425 0.90606 0.86082 0.82747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.38 71.98 0.68 -1.24 16 2 C 0.13 2.20 2.99 44.24 0.13 2.33 16 3 H 0.12 2.00 7.58 -2.39 -0.02 1.98 16 4 N -0.71 -12.20 4.74 -446.09 -2.11 -14.31 16 5 C 0.52 9.88 6.45 87.66 0.56 10.44 16 6 O -0.57 -14.52 15.64 -3.04 -0.05 -14.57 16 7 C -0.08 -1.09 0.87 -52.93 -0.05 -1.14 16 8 C -0.13 -1.63 7.76 71.98 0.56 -1.07 16 9 C -0.14 -1.28 8.37 71.98 0.60 -0.68 16 10 C -0.14 -1.61 8.37 71.98 0.60 -1.01 16 11 C 0.51 11.08 6.95 87.66 0.61 11.68 16 12 O -0.55 -15.87 13.63 -3.07 -0.04 -15.91 16 13 N -0.64 -13.22 5.26 -303.38 -1.60 -14.81 16 14 C 0.07 2.12 6.25 38.17 0.24 2.36 16 15 C -0.07 -2.46 8.64 22.38 0.19 -2.27 16 16 C -0.18 -6.94 9.98 22.38 0.22 -6.72 16 17 C 0.11 5.26 6.65 22.59 0.15 5.41 16 18 O -0.24 -13.08 8.58 -22.80 -0.20 -13.28 16 19 C -0.40 -22.83 9.90 67.91 0.67 -22.16 16 20 H 0.09 5.10 5.52 -2.91 -0.02 5.08 16 21 C 0.01 0.62 5.49 84.83 0.47 1.08 16 22 N -0.92 -54.07 13.96 21.61 0.30 -53.77 16 23 Si 0.97 45.19 28.62 68.60 1.96 47.15 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.26 -12.36 7.11 99.48 0.71 -11.66 16 27 C -0.21 -8.84 9.13 22.37 0.20 -8.63 16 28 C -0.08 -2.54 9.96 22.38 0.22 -2.32 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.10 0.75 7.45 -2.39 -0.02 0.73 16 31 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.41 6.80 6.63 -92.71 -0.61 6.19 16 33 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 34 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.05 0.77 8.10 -2.39 -0.02 0.75 16 36 H 0.06 0.57 7.57 -2.39 -0.02 0.55 16 37 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.06 0.75 7.56 -2.38 -0.02 0.73 16 42 H 0.43 5.45 8.09 -92.71 -0.75 4.70 16 43 H 0.13 4.33 6.52 -2.91 -0.02 4.31 16 44 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 45 H 0.28 15.37 8.31 -92.70 -0.77 14.59 16 46 H 0.12 5.41 5.70 -2.91 -0.02 5.40 16 47 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -72.52 389.14 3.98 -68.54 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: -0.36 Total: 24.90 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: 6.07 Total: -13.93 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -3.41 Total: -82.90 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -0.29 Total: -43.76 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.96 Total: 47.15 kcal Total: -72.52 3.98 -68.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073766054.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.383 kcal (2) G-P(sol) polarization free energy of solvation -72.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds