Wall clock time and date at job start Tue Mar 31 2020 18:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47179 * 2 1 4 4 C 1.50700 * 109.46606 * 120.00055 * 2 1 3 5 5 O 1.21286 * 120.00201 * 120.00177 * 4 2 1 6 6 N 1.34779 * 120.00040 * 299.99782 * 4 2 1 7 7 C 1.46504 * 120.00049 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47193 * 179.97438 * 7 6 4 9 9 C 1.50694 * 109.47287 * 179.97438 * 8 7 6 10 10 C 1.38250 * 119.94595 * 89.99934 * 9 8 7 11 11 C 1.38194 * 120.11689 * 179.75348 * 10 9 8 12 12 C 1.38702 * 120.06401 * 0.24822 * 11 10 9 13 13 C 1.38964 * 119.82118 * 359.93995 * 12 11 10 14 14 C 1.38199 * 119.94483 * 270.25424 * 9 8 7 15 15 O 1.36114 * 120.78514 * 180.21095 * 13 12 11 16 16 C 1.43176 * 116.69777 * 342.71791 * 15 13 12 17 17 C 1.53473 * 108.23573 * 46.24924 * 16 15 13 18 18 O 1.36109 * 119.39424 * 179.79997 * 12 11 10 19 19 N 1.46498 * 109.47035 * 239.99859 * 2 1 3 20 20 C 1.46500 * 119.99892 * 300.00118 * 19 2 1 21 21 C 1.36932 * 119.99864 * 120.00356 * 19 2 1 22 22 H 1.08002 * 120.00342 * 20.42649 * 21 19 2 23 23 C 1.38810 * 119.99818 * 200.42767 * 21 19 2 24 24 N 1.31615 * 120.00337 * 15.03183 * 23 21 19 25 25 Si 1.86810 * 120.00007 * 195.03270 * 23 21 19 26 26 H 1.48501 * 109.47018 * 85.00016 * 25 23 21 27 27 H 1.48497 * 109.47116 * 205.00089 * 25 23 21 28 28 H 1.48499 * 109.46665 * 325.00032 * 25 23 21 29 29 H 1.09000 * 109.46667 * 59.99931 * 1 2 3 30 30 H 1.08992 * 109.47179 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47290 * 300.00184 * 1 2 3 32 32 H 0.96997 * 119.99930 * 359.97438 * 6 4 2 33 33 H 1.08998 * 109.47079 * 59.99528 * 7 6 4 34 34 H 1.09001 * 109.47093 * 299.99846 * 7 6 4 35 35 H 1.09007 * 109.47304 * 59.99592 * 8 7 6 36 36 H 1.09001 * 109.47039 * 299.99957 * 8 7 6 37 37 H 1.08009 * 119.94376 * 0.02824 * 10 9 8 38 38 H 1.07998 * 119.97074 * 180.26399 * 11 10 9 39 39 H 1.08004 * 119.96601 * 0.04120 * 14 9 8 40 40 H 1.09004 * 109.70804 * 286.56584 * 16 15 13 41 41 H 1.08997 * 109.71483 * 165.93727 * 16 15 13 42 42 H 1.08994 * 109.70680 * 180.57809 * 17 16 15 43 43 H 1.09002 * 109.73879 * 59.97501 * 17 16 15 44 44 H 1.09004 * 109.47285 * 95.21402 * 20 19 2 45 45 H 1.09004 * 109.46845 * 215.21019 * 20 19 2 46 46 H 1.08999 * 109.47326 * 335.21137 * 20 19 2 47 47 H 0.96999 * 120.00354 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7295 -1.6966 1.1193 6 7 1.7066 -0.2499 2.4546 7 6 2.1953 -0.9403 3.6508 8 6 1.6857 -0.2187 4.9000 9 6 2.1878 -0.9291 6.1305 10 6 3.3962 -0.5633 6.6938 11 6 3.8576 -1.2089 7.8252 12 6 3.1116 -2.2297 8.3956 13 6 1.8989 -2.6001 7.8272 14 6 1.4422 -1.9489 6.6909 15 8 1.1489 -3.5962 8.3732 16 6 1.8140 -4.4749 9.2872 17 6 2.6338 -3.6210 10.2639 18 8 3.5810 -2.8591 9.5074 19 7 2.0183 -0.6906 -1.1961 20 6 1.6644 -2.0932 -1.4279 21 6 2.8056 -0.0252 -2.0975 22 1 3.3362 0.8660 -1.7965 23 6 2.9217 -0.4961 -3.3981 24 7 2.0675 -1.3875 -3.8540 25 14 4.2905 0.1355 -4.5014 26 1 5.5259 -0.6517 -4.2575 27 1 3.8856 -0.0066 -5.9231 28 1 4.5480 1.5667 -4.2007 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.1493 0.5389 2.5436 33 1 3.2853 -0.9400 3.6507 34 1 1.8323 -1.9681 3.6510 35 1 0.5956 -0.2186 4.9003 36 1 2.0491 0.8089 4.8996 37 1 3.9785 0.2316 6.2515 38 1 4.7998 -0.9183 8.2657 39 1 0.5008 -2.2360 6.2461 40 1 2.4768 -5.1436 8.7378 41 1 1.0768 -5.0585 9.8385 42 1 3.1595 -4.2682 10.9660 43 1 1.9722 -2.9479 10.8092 44 1 0.7899 -2.1449 -2.0767 45 1 2.5007 -2.6051 -1.9041 46 1 1.4392 -2.5733 -0.4756 47 1 2.1488 -1.7169 -4.7627 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075828650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:35 Heat of formation + Delta-G solvation = -58.601752 kcal Electronic energy + Delta-G solvation = -28101.053655 eV Core-core repulsion = 24057.484669 eV Total energy + Delta-G solvation = -4043.568986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.56411 -39.28422 -38.42248 -37.57610 -35.63914 -34.74001 -32.63484 -31.85002 -31.20570 -29.94453 -29.02723 -27.62012 -25.87427 -25.14700 -24.14403 -23.37721 -22.59563 -21.28851 -20.73065 -19.30044 -18.82546 -17.59664 -17.48390 -16.86823 -16.17195 -15.77416 -15.73825 -15.41311 -15.22029 -14.82270 -14.73934 -14.41180 -14.35067 -14.14623 -13.75136 -13.67707 -13.23059 -13.07950 -12.62975 -12.39495 -12.29723 -12.17439 -11.94570 -11.61205 -11.48476 -11.34493 -11.22938 -11.16323 -10.80803 -10.79239 -10.70307 -10.52487 -10.25325 -9.98545 -9.79112 -9.01028 -8.88937 -8.61974 -8.44242 -8.29489 -6.72499 -5.65636 -3.09707 0.97428 1.03055 2.64541 2.85564 3.35865 3.42045 3.43792 3.50411 3.50566 3.67209 3.81211 4.29279 4.36922 4.46412 4.54889 4.65678 4.70979 4.86346 4.97748 5.02426 5.05151 5.09970 5.19429 5.42023 5.46071 5.50593 5.57044 5.62742 5.81850 5.86726 5.90090 5.96197 6.04400 6.12280 6.28575 6.28870 6.37334 6.55090 6.58509 6.85362 6.88436 7.06061 7.08247 7.61423 7.80518 7.91623 8.00859 8.43439 8.95234 9.29262 9.91672 10.39480 11.38737 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024441 B = 0.001934 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.324715 B =14477.125978 C =14635.700305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.159 3.841 3 H 0.088 0.912 4 C 0.491 3.509 5 O -0.525 6.525 6 N -0.745 5.745 7 C 0.125 3.875 8 C -0.088 4.088 9 C -0.072 4.072 10 C -0.107 4.107 11 C -0.111 4.111 12 C 0.044 3.956 13 C 0.051 3.949 14 C -0.106 4.106 15 O -0.308 6.308 16 C 0.020 3.980 17 C 0.021 3.979 18 O -0.309 6.309 19 N -0.573 5.573 20 C 0.170 3.830 21 C -0.256 4.256 22 H 0.068 0.932 23 C 0.003 3.997 24 N -0.903 5.903 25 Si 0.906 3.094 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.280 1.280 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.395 0.605 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.076 0.924 44 H 0.025 0.975 45 H 0.040 0.960 46 H 0.007 0.993 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.115 -0.115 29.829 29.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.045 3.955 3 H 0.106 0.894 4 C 0.276 3.724 5 O -0.399 6.399 6 N -0.400 5.400 7 C 0.001 3.999 8 C -0.125 4.125 9 C -0.073 4.073 10 C -0.126 4.126 11 C -0.130 4.130 12 C 0.000 4.000 13 C 0.006 3.994 14 C -0.125 4.125 15 O -0.222 6.222 16 C -0.056 4.056 17 C -0.055 4.055 18 O -0.224 6.224 19 N -0.293 5.293 20 C 0.026 3.974 21 C -0.386 4.386 22 H 0.086 0.914 23 C -0.195 4.195 24 N -0.548 5.548 25 Si 0.736 3.264 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.206 1.206 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.228 0.772 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.096 0.904 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.095 0.905 44 H 0.044 0.956 45 H 0.059 0.941 46 H 0.025 0.975 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.595 -1.013 29.543 29.674 hybrid contribution 0.501 0.324 -0.265 0.653 sum -2.093 -0.689 29.279 29.362 Atomic orbital electron populations 1.22233 0.96359 1.01781 1.00955 1.20240 0.93383 0.96015 0.85843 0.89449 1.22786 0.79687 0.85188 0.84745 1.90639 1.36724 1.26061 1.86438 1.46347 1.55423 1.32656 1.05623 1.21184 0.99361 0.96291 0.83100 1.20762 1.01579 0.99271 0.90909 1.19447 0.94724 0.96381 0.96742 1.20872 0.95762 1.00526 0.95402 1.20423 1.00745 0.94455 0.97354 1.18902 0.94941 0.96548 0.89638 1.18846 0.92479 0.92526 0.95542 1.20340 1.01705 0.97079 0.93377 1.86320 1.36736 1.40200 1.58967 1.23635 0.98502 0.91811 0.91613 1.23619 0.92982 0.95240 0.93642 1.86309 1.36349 1.63514 1.36181 1.43656 1.57877 1.08545 1.19262 1.20726 0.99293 0.82846 0.94547 1.19198 1.20064 1.09394 0.89904 0.91408 1.24926 0.98580 0.99541 0.96500 1.70111 1.35106 1.33592 1.15983 0.86251 0.82088 0.78370 0.79663 1.21464 1.21777 1.20571 0.91496 0.92939 0.93792 0.77155 0.91813 0.91907 0.90117 0.89940 0.84767 0.84740 0.84628 0.90380 0.86050 0.86111 0.90529 0.95630 0.94122 0.97472 0.93763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.09 37.16 0.34 -2.32 16 2 C 0.16 3.26 3.13 -69.08 -0.22 3.05 16 3 H 0.09 1.69 7.85 -51.93 -0.41 1.28 16 4 C 0.49 9.63 6.85 -10.98 -0.08 9.55 16 5 O -0.52 -12.74 14.61 5.55 0.08 -12.66 16 6 N -0.74 -10.41 5.45 -60.29 -0.33 -10.73 16 7 C 0.13 1.58 5.66 -4.04 -0.02 1.55 16 8 C -0.09 -0.77 5.45 -27.89 -0.15 -0.92 16 9 C -0.07 -0.70 5.13 -104.63 -0.54 -1.24 16 10 C -0.11 -1.00 9.69 -39.59 -0.38 -1.38 16 11 C -0.11 -1.08 9.96 -39.43 -0.39 -1.48 16 12 C 0.04 0.48 6.49 -39.14 -0.25 0.22 16 13 C 0.05 0.56 6.49 -39.14 -0.25 0.31 16 14 C -0.11 -1.12 9.62 -39.42 -0.38 -1.50 16 15 O -0.31 -3.15 10.42 -32.89 -0.34 -3.49 16 16 C 0.02 0.13 7.26 37.40 0.27 0.40 16 17 C 0.02 0.12 7.26 37.40 0.27 0.40 16 18 O -0.31 -3.03 10.42 -32.87 -0.34 -3.37 16 19 N -0.57 -15.08 2.59 -174.81 -0.45 -15.53 16 20 C 0.17 4.60 7.47 59.85 0.45 5.05 16 21 C -0.26 -7.27 9.61 -15.06 -0.14 -7.41 16 22 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 23 C 0.00 0.09 5.06 -17.43 -0.09 0.00 16 24 N -0.90 -27.09 10.67 55.49 0.59 -26.50 16 25 Si 0.91 22.49 29.58 -169.99 -5.03 17.46 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.05 0.96 7.67 -51.93 -0.40 0.56 16 31 H 0.04 0.57 7.57 -51.93 -0.39 0.17 16 32 H 0.39 4.20 7.89 -40.82 -0.32 3.88 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 36 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 37 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 39 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.03 0.72 7.39 -51.93 -0.38 0.33 16 45 H 0.04 1.20 7.23 -51.93 -0.38 0.82 16 46 H 0.01 0.17 6.43 -51.93 -0.33 -0.16 16 47 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 384.77 15.07 5.80 5.80 Total: -1.00 -36.33 384.77 -8.82 -45.15 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -7.23 Total: -0.40 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -1.57 Total: 4.28 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.19 Total: -52.77 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.60 Total: -19.52 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.33 -8.82 -45.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075828650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.453 kcal (2) G-P(sol) polarization free energy of solvation -36.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds