Wall clock time and date at job start Tue Mar 31 2020 18:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47179 * 2 1 4 4 C 1.50700 * 109.46606 * 120.00055 * 2 1 3 5 5 O 1.21286 * 120.00201 * 120.00177 * 4 2 1 6 6 N 1.34779 * 120.00040 * 299.99782 * 4 2 1 7 7 C 1.46504 * 120.00049 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47193 * 179.97438 * 7 6 4 9 9 C 1.50694 * 109.47287 * 179.97438 * 8 7 6 10 10 C 1.38250 * 119.94595 * 89.99934 * 9 8 7 11 11 C 1.38194 * 120.11689 * 179.75348 * 10 9 8 12 12 C 1.38702 * 120.06401 * 0.24822 * 11 10 9 13 13 C 1.38964 * 119.82118 * 359.93995 * 12 11 10 14 14 C 1.38199 * 119.94483 * 270.25424 * 9 8 7 15 15 O 1.36114 * 120.78514 * 180.21095 * 13 12 11 16 16 C 1.43176 * 116.69777 * 342.71791 * 15 13 12 17 17 C 1.53473 * 108.23573 * 46.24924 * 16 15 13 18 18 O 1.36109 * 119.39424 * 179.79997 * 12 11 10 19 19 N 1.46498 * 109.47035 * 239.99859 * 2 1 3 20 20 C 1.46500 * 119.99892 * 300.00118 * 19 2 1 21 21 C 1.36932 * 119.99864 * 120.00356 * 19 2 1 22 22 H 1.08002 * 120.00342 * 20.42649 * 21 19 2 23 23 C 1.38810 * 119.99818 * 200.42767 * 21 19 2 24 24 N 1.31615 * 120.00337 * 15.03183 * 23 21 19 25 25 Si 1.86810 * 120.00007 * 195.03270 * 23 21 19 26 26 H 1.48501 * 109.47018 * 85.00016 * 25 23 21 27 27 H 1.48497 * 109.47116 * 205.00089 * 25 23 21 28 28 H 1.48499 * 109.46665 * 325.00032 * 25 23 21 29 29 H 1.09000 * 109.46667 * 59.99931 * 1 2 3 30 30 H 1.08992 * 109.47179 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47290 * 300.00184 * 1 2 3 32 32 H 0.96997 * 119.99930 * 359.97438 * 6 4 2 33 33 H 1.08998 * 109.47079 * 59.99528 * 7 6 4 34 34 H 1.09001 * 109.47093 * 299.99846 * 7 6 4 35 35 H 1.09007 * 109.47304 * 59.99592 * 8 7 6 36 36 H 1.09001 * 109.47039 * 299.99957 * 8 7 6 37 37 H 1.08009 * 119.94376 * 0.02824 * 10 9 8 38 38 H 1.07998 * 119.97074 * 180.26399 * 11 10 9 39 39 H 1.08004 * 119.96601 * 0.04120 * 14 9 8 40 40 H 1.09004 * 109.70804 * 286.56584 * 16 15 13 41 41 H 1.08997 * 109.71483 * 165.93727 * 16 15 13 42 42 H 1.08994 * 109.70680 * 180.57809 * 17 16 15 43 43 H 1.09002 * 109.73879 * 59.97501 * 17 16 15 44 44 H 1.09004 * 109.47285 * 95.21402 * 20 19 2 45 45 H 1.09004 * 109.46845 * 215.21019 * 20 19 2 46 46 H 1.08999 * 109.47326 * 335.21137 * 20 19 2 47 47 H 0.96999 * 120.00354 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7295 -1.6966 1.1193 6 7 1.7066 -0.2499 2.4546 7 6 2.1953 -0.9403 3.6508 8 6 1.6857 -0.2187 4.9000 9 6 2.1878 -0.9291 6.1305 10 6 3.3962 -0.5633 6.6938 11 6 3.8576 -1.2089 7.8252 12 6 3.1116 -2.2297 8.3956 13 6 1.8989 -2.6001 7.8272 14 6 1.4422 -1.9489 6.6909 15 8 1.1489 -3.5962 8.3732 16 6 1.8140 -4.4749 9.2872 17 6 2.6338 -3.6210 10.2639 18 8 3.5810 -2.8591 9.5074 19 7 2.0183 -0.6906 -1.1961 20 6 1.6644 -2.0932 -1.4279 21 6 2.8056 -0.0252 -2.0975 22 1 3.3362 0.8660 -1.7965 23 6 2.9217 -0.4961 -3.3981 24 7 2.0675 -1.3875 -3.8540 25 14 4.2905 0.1355 -4.5014 26 1 5.5259 -0.6517 -4.2575 27 1 3.8856 -0.0066 -5.9231 28 1 4.5480 1.5667 -4.2007 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.1493 0.5389 2.5436 33 1 3.2853 -0.9400 3.6507 34 1 1.8323 -1.9681 3.6510 35 1 0.5956 -0.2186 4.9003 36 1 2.0491 0.8089 4.8996 37 1 3.9785 0.2316 6.2515 38 1 4.7998 -0.9183 8.2657 39 1 0.5008 -2.2360 6.2461 40 1 2.4768 -5.1436 8.7378 41 1 1.0768 -5.0585 9.8385 42 1 3.1595 -4.2682 10.9660 43 1 1.9722 -2.9479 10.8092 44 1 0.7899 -2.1449 -2.0767 45 1 2.5007 -2.6051 -1.9041 46 1 1.4392 -2.5733 -0.4756 47 1 2.1488 -1.7169 -4.7627 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075828650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:34 Heat of formation + Delta-G solvation = -83.313849 kcal Electronic energy + Delta-G solvation = -28102.125252 eV Core-core repulsion = 24057.484669 eV Total energy + Delta-G solvation = -4044.640583 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.22433 -40.77596 -39.21514 -38.24892 -37.37234 -36.10495 -34.11505 -33.23896 -31.88157 -31.15427 -30.31807 -28.52544 -28.02016 -26.02801 -25.54925 -24.46515 -23.50085 -22.83697 -21.46431 -20.72743 -19.55517 -18.90483 -18.24758 -18.17309 -17.63698 -17.29426 -16.59148 -16.44913 -16.34561 -16.01685 -15.68908 -15.40296 -15.27677 -15.15356 -14.99402 -14.84256 -14.63493 -14.39657 -14.08467 -13.92181 -13.26288 -13.15986 -13.07684 -12.87605 -12.78699 -12.67663 -12.63901 -12.38827 -12.17844 -12.14310 -12.01417 -11.96819 -11.88966 -11.82426 -11.44481 -10.82105 -10.47008 -9.95409 -9.61972 -9.03441 -8.81435 -7.81635 -5.28126 0.22720 0.29676 1.45815 1.50508 1.57089 1.86169 2.02355 2.24973 2.34184 2.55151 2.69144 3.28285 3.32963 3.62994 3.65993 3.85695 3.91764 4.03532 4.07581 4.10753 4.21818 4.31259 4.32385 4.40692 4.43079 4.49286 4.55957 4.56665 4.68004 4.80346 4.84273 4.95875 5.03015 5.05645 5.12733 5.13788 5.18676 5.38326 5.43084 5.56911 5.59690 5.62689 5.67928 5.69156 5.89912 6.28877 6.39663 6.74583 7.12935 7.49306 7.85621 8.29146 9.22110 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024441 B = 0.001934 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.324715 B =14477.125978 C =14635.700305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.149 3.851 3 H 0.104 0.896 4 C 0.494 3.506 5 O -0.579 6.579 6 N -0.717 5.717 7 C 0.128 3.872 8 C -0.073 4.073 9 C -0.078 4.078 10 C -0.109 4.109 11 C -0.122 4.122 12 C 0.032 3.968 13 C 0.034 3.966 14 C -0.119 4.119 15 O -0.326 6.326 16 C 0.013 3.987 17 C 0.016 3.984 18 O -0.325 6.325 19 N -0.594 5.594 20 C 0.196 3.804 21 C -0.265 4.265 22 H 0.076 0.924 23 C -0.056 4.056 24 N -0.937 5.937 25 Si 0.971 3.029 26 H -0.293 1.293 27 H -0.293 1.293 28 H -0.262 1.262 29 H 0.054 0.946 30 H 0.037 0.963 31 H 0.097 0.903 32 H 0.416 0.584 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.139 0.861 40 H 0.074 0.926 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.082 0.918 44 H 0.007 0.993 45 H 0.002 0.998 46 H 0.016 0.984 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.346 1.759 31.973 32.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.037 3.963 3 H 0.121 0.879 4 C 0.280 3.720 5 O -0.458 6.458 6 N -0.372 5.372 7 C 0.004 3.996 8 C -0.110 4.110 9 C -0.079 4.079 10 C -0.127 4.127 11 C -0.140 4.140 12 C -0.013 4.013 13 C -0.011 4.011 14 C -0.138 4.138 15 O -0.241 6.241 16 C -0.062 4.062 17 C -0.059 4.059 18 O -0.240 6.240 19 N -0.315 5.315 20 C 0.051 3.949 21 C -0.395 4.395 22 H 0.094 0.906 23 C -0.251 4.251 24 N -0.583 5.583 25 Si 0.799 3.201 26 H -0.221 1.221 27 H -0.219 1.219 28 H -0.186 1.186 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.115 0.885 32 H 0.254 0.746 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.172 0.828 38 H 0.165 0.835 39 H 0.157 0.843 40 H 0.092 0.908 41 H 0.171 0.829 42 H 0.170 0.830 43 H 0.100 0.900 44 H 0.025 0.975 45 H 0.021 0.979 46 H 0.034 0.966 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.867 0.931 31.776 31.919 hybrid contribution 0.557 -0.284 -0.729 0.960 sum -2.310 0.647 31.047 31.140 Atomic orbital electron populations 1.22089 0.93526 1.01477 1.02979 1.20596 0.95365 0.96232 0.84086 0.87850 1.22367 0.79143 0.84428 0.86086 1.90630 1.39351 1.28450 1.87336 1.45970 1.54196 1.32669 1.04375 1.21225 0.98615 0.95952 0.83856 1.20675 1.02590 0.99624 0.88121 1.19562 0.94924 0.96384 0.97071 1.21152 0.95669 1.00735 0.95101 1.20705 1.01253 0.94401 0.97645 1.19136 0.95049 0.96960 0.90178 1.19057 0.92881 0.93128 0.96052 1.20547 1.02161 0.97467 0.93607 1.86280 1.37614 1.40473 1.59782 1.23944 0.99437 0.91470 0.91331 1.23930 0.93024 0.95373 0.93536 1.86273 1.37779 1.63883 1.36108 1.43827 1.58492 1.08276 1.20906 1.20290 0.96798 0.83836 0.93988 1.19594 1.20130 1.09385 0.90341 0.90593 1.25766 1.00856 1.00350 0.98153 1.70264 1.36803 1.35233 1.16043 0.85219 0.78734 0.78572 0.77529 1.22068 1.21910 1.18618 0.92701 0.94396 0.88472 0.74613 0.93176 0.93634 0.88339 0.87579 0.82817 0.83482 0.84280 0.90774 0.82945 0.83008 0.90025 0.97500 0.97900 0.96555 0.94311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.58 9.09 71.98 0.65 -3.92 16 2 C 0.15 5.89 3.13 44.25 0.14 6.03 16 3 H 0.10 3.73 7.85 -2.39 -0.02 3.72 16 4 C 0.49 18.75 6.85 87.66 0.60 19.35 16 5 O -0.58 -28.31 14.61 -3.05 -0.04 -28.36 16 6 N -0.72 -18.05 5.45 -463.05 -2.52 -20.57 16 7 C 0.13 2.97 5.66 86.38 0.49 3.46 16 8 C -0.07 -1.05 5.45 29.84 0.16 -0.89 16 9 C -0.08 -1.39 5.13 -19.87 -0.10 -1.49 16 10 C -0.11 -1.83 9.69 22.26 0.22 -1.61 16 11 C -0.12 -2.25 9.96 22.37 0.22 -2.03 16 12 C 0.03 0.67 6.49 22.55 0.15 0.81 16 13 C 0.03 0.73 6.49 22.56 0.15 0.88 16 14 C -0.12 -2.41 9.62 22.37 0.22 -2.20 16 15 O -0.33 -6.55 10.42 -82.62 -0.86 -7.41 16 16 C 0.01 0.15 7.26 72.14 0.52 0.67 16 17 C 0.02 0.17 7.26 72.14 0.52 0.69 16 18 O -0.33 -6.14 10.42 -82.57 -0.86 -7.00 16 19 N -0.59 -31.45 2.59 -706.99 -1.83 -33.28 16 20 C 0.20 10.95 7.47 127.77 0.95 11.91 16 21 C -0.26 -15.05 9.61 84.03 0.81 -14.24 16 22 H 0.08 4.09 7.81 -2.91 -0.02 4.07 16 23 C -0.06 -3.28 5.06 84.86 0.43 -2.85 16 24 N -0.94 -57.75 10.67 21.65 0.23 -57.52 16 25 Si 0.97 46.66 29.58 68.60 2.03 48.69 16 26 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 27 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 28 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.04 1.33 7.67 -2.39 -0.02 1.31 16 31 H 0.10 2.08 7.57 -2.38 -0.02 2.06 16 32 H 0.42 7.00 7.89 -92.71 -0.73 6.27 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.10 1.13 8.09 -2.38 -0.02 1.11 16 36 H 0.11 1.09 8.09 -2.39 -0.02 1.07 16 37 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 38 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 39 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.15 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.15 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.01 0.40 7.39 -2.38 -0.02 0.38 16 45 H 0.00 0.13 7.23 -2.38 -0.02 0.12 16 46 H 0.02 0.85 6.43 -2.39 -0.02 0.83 16 47 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -82.26 384.77 2.52 -79.74 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 0.25 Total: 11.14 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 6.13 Total: 14.58 kcal Atomic # 7 Polarization: -107.26 SS G_CDS: -4.12 Total: -111.38 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -1.77 Total: -42.76 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -82.26 2.52 -79.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075828650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.573 kcal (2) G-P(sol) polarization free energy of solvation -82.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds