Wall clock time and date at job start Tue Mar 31 2020 18:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.46833 * 2 1 4 4 C 1.50698 * 109.47703 * 239.99916 * 2 1 3 5 5 O 1.21282 * 120.00014 * 240.00674 * 4 2 1 6 6 N 1.34776 * 119.99867 * 59.99379 * 4 2 1 7 7 C 1.46506 * 120.00044 * 180.02562 * 6 4 2 8 8 C 1.52995 * 109.46775 * 180.02562 * 7 6 4 9 9 C 1.50707 * 109.46639 * 179.97438 * 8 7 6 10 10 C 1.38248 * 119.94221 * 269.72687 * 9 8 7 11 11 C 1.38201 * 120.11416 * 179.78225 * 10 9 8 12 12 C 1.38700 * 120.06398 * 0.55523 * 11 10 9 13 13 C 1.38980 * 119.82218 * 359.62749 * 12 11 10 14 14 C 1.38203 * 119.94376 * 89.99990 * 9 8 7 15 15 O 1.36104 * 120.78566 * 180.26381 * 13 12 11 16 16 C 1.43174 * 116.71862 * 342.81813 * 15 13 12 17 17 C 1.53470 * 108.24961 * 46.15931 * 16 15 13 18 18 O 1.36109 * 119.39899 * 179.54094 * 12 11 10 19 19 N 1.46507 * 109.47083 * 119.99453 * 2 1 3 20 20 C 1.46499 * 119.99574 * 60.00561 * 19 2 1 21 21 C 1.36928 * 120.00171 * 240.00271 * 19 2 1 22 22 H 1.08002 * 120.00056 * 339.35974 * 21 19 2 23 23 C 1.38808 * 120.00081 * 159.36555 * 21 19 2 24 24 N 1.31620 * 119.99726 * 345.10691 * 23 21 19 25 25 Si 1.86807 * 120.00151 * 165.38854 * 23 21 19 26 26 H 1.48494 * 109.46879 * 265.52059 * 25 23 21 27 27 H 1.48498 * 109.46941 * 25.52507 * 25 23 21 28 28 H 1.48498 * 109.46778 * 145.52607 * 25 23 21 29 29 H 1.09007 * 109.47162 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47455 * 300.00121 * 1 2 3 31 31 H 1.09005 * 109.47578 * 60.00472 * 1 2 3 32 32 H 0.97003 * 119.99681 * 0.02562 * 6 4 2 33 33 H 1.09002 * 109.46668 * 300.00506 * 7 6 4 34 34 H 1.08997 * 109.46888 * 60.00447 * 7 6 4 35 35 H 1.09002 * 109.47542 * 299.99489 * 8 7 6 36 36 H 1.08997 * 109.47442 * 60.00303 * 8 7 6 37 37 H 1.08003 * 119.94663 * 0.02562 * 10 9 8 38 38 H 1.07991 * 119.97143 * 180.29025 * 11 10 9 39 39 H 1.07990 * 119.96247 * 359.97438 * 14 9 8 40 40 H 1.08997 * 109.71029 * 165.84759 * 16 15 13 41 41 H 1.09000 * 109.70549 * 286.47291 * 16 15 13 42 42 H 1.09003 * 109.70811 * 59.95137 * 17 16 15 43 43 H 1.08998 * 109.70864 * 180.57525 * 17 16 15 44 44 H 1.08997 * 109.46920 * 265.20373 * 20 19 2 45 45 H 1.09001 * 109.47507 * 25.20471 * 20 19 2 46 46 H 1.08998 * 109.47174 * 145.20448 * 20 19 2 47 47 H 0.97003 * 119.99943 * 180.27529 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1190 6 7 1.7067 -0.2500 -2.4545 7 6 2.1948 -0.9409 -3.6507 8 6 1.6853 -0.2193 -4.8999 9 6 2.1878 -0.9297 -6.1303 10 6 3.3935 -0.5598 -6.6966 11 6 3.8599 -1.2118 -7.8224 12 6 3.1136 -2.2317 -8.3938 13 6 1.8997 -2.6011 -7.8268 14 6 1.4399 -1.9460 -6.6940 15 8 1.1540 -3.6028 -8.3682 16 6 1.4662 -3.9831 -9.7127 17 6 2.9900 -4.1216 -9.8315 18 8 3.5813 -2.8584 -9.5079 19 7 2.0183 -0.6905 1.1963 20 6 1.6644 -2.0931 1.4281 21 6 2.8054 -0.0250 2.0976 22 1 3.3387 0.8643 1.7956 23 6 2.9181 -0.4934 3.3994 24 7 2.0626 -1.3839 3.8547 25 14 4.2792 0.1461 4.5076 26 1 5.4441 -0.7724 4.4412 27 1 4.6898 1.5000 4.0564 28 1 3.7855 0.2190 5.9062 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.1493 0.5388 -2.5435 33 1 3.2848 -0.9413 -3.6507 34 1 1.8311 -1.9684 -3.6505 35 1 0.5953 -0.2187 -4.9000 36 1 2.0493 0.8081 -4.8999 37 1 3.9739 0.2375 -6.2563 38 1 4.8043 -0.9241 -8.2601 39 1 0.4965 -2.2303 -6.2519 40 1 0.9913 -4.9364 -9.9447 41 1 1.1118 -3.2176 -10.4029 42 1 3.3452 -4.8827 -9.1366 43 1 3.2553 -4.4014 -10.8510 44 1 0.7855 -2.1446 2.0707 45 1 1.4464 -2.5752 0.4751 46 1 2.4979 -2.6031 1.9110 47 1 2.1389 -1.7083 4.7657 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075828653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:38 Heat of formation + Delta-G solvation = -58.647716 kcal Electronic energy + Delta-G solvation = -28098.857321 eV Core-core repulsion = 24055.286342 eV Total energy + Delta-G solvation = -4043.570979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.56459 -39.28398 -38.42194 -37.57769 -35.63842 -34.73954 -32.63416 -31.84940 -31.20718 -29.94461 -29.02760 -27.62021 -25.87349 -25.15109 -24.14298 -23.37628 -22.58917 -21.28560 -20.74213 -19.30135 -18.82714 -17.59576 -17.46668 -16.86911 -16.16388 -15.88008 -15.66746 -15.41338 -15.21555 -14.82490 -14.74718 -14.40837 -14.32726 -14.14778 -13.74942 -13.57418 -13.38959 -13.06933 -12.61655 -12.35908 -12.32245 -12.15046 -11.95169 -11.61578 -11.50089 -11.32988 -11.22701 -11.16333 -10.81476 -10.78932 -10.70977 -10.52251 -10.24998 -9.97448 -9.79506 -9.00711 -8.89208 -8.61890 -8.44588 -8.29337 -6.72154 -5.65862 -3.09865 0.97162 1.03235 2.65088 2.85353 3.34724 3.42092 3.43646 3.50081 3.50965 3.67861 3.81179 4.29187 4.36892 4.46441 4.54767 4.65527 4.70871 4.86438 4.98495 5.01040 5.05349 5.10153 5.19458 5.42007 5.45951 5.50666 5.57076 5.62709 5.81834 5.86739 5.90071 5.96257 6.04512 6.12346 6.28610 6.28905 6.37331 6.55097 6.58558 6.85403 6.88471 7.06485 7.08221 7.61506 7.80582 7.91693 8.00906 8.43550 8.95308 9.29250 9.91602 10.39517 11.38708 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024309 B = 0.001934 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.548175 B =14471.762608 C =14641.316441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.159 3.841 3 H 0.088 0.912 4 C 0.491 3.509 5 O -0.525 6.525 6 N -0.745 5.745 7 C 0.125 3.875 8 C -0.088 4.088 9 C -0.072 4.072 10 C -0.108 4.108 11 C -0.111 4.111 12 C 0.044 3.956 13 C 0.051 3.949 14 C -0.107 4.107 15 O -0.307 6.307 16 C 0.021 3.979 17 C 0.020 3.980 18 O -0.309 6.309 19 N -0.573 5.573 20 C 0.170 3.830 21 C -0.256 4.256 22 H 0.068 0.932 23 C 0.003 3.997 24 N -0.903 5.903 25 Si 0.906 3.094 26 H -0.288 1.288 27 H -0.279 1.279 28 H -0.292 1.292 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.395 0.605 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.121 0.879 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.121 0.879 44 H 0.025 0.975 45 H 0.007 0.993 46 H 0.041 0.959 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.094 -0.121 -29.842 30.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.045 3.955 3 H 0.105 0.895 4 C 0.276 3.724 5 O -0.399 6.399 6 N -0.400 5.400 7 C 0.001 3.999 8 C -0.125 4.125 9 C -0.073 4.073 10 C -0.126 4.126 11 C -0.129 4.129 12 C -0.001 4.001 13 C 0.006 3.994 14 C -0.125 4.125 15 O -0.222 6.222 16 C -0.055 4.055 17 C -0.056 4.056 18 O -0.224 6.224 19 N -0.293 5.293 20 C 0.026 3.974 21 C -0.385 4.385 22 H 0.086 0.914 23 C -0.196 4.196 24 N -0.548 5.548 25 Si 0.736 3.264 26 H -0.215 1.215 27 H -0.205 1.205 28 H -0.218 1.218 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.228 0.772 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.139 0.861 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.139 0.861 44 H 0.043 0.957 45 H 0.025 0.975 46 H 0.059 0.941 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.572 -1.017 -29.560 29.689 hybrid contribution 0.494 0.323 0.273 0.650 sum -2.078 -0.694 -29.287 29.369 Atomic orbital electron populations 1.22232 0.96355 1.01783 1.00952 1.20239 0.93382 0.96017 0.85847 0.89451 1.22781 0.79689 0.85188 0.84743 1.90638 1.36730 1.26057 1.86434 1.46349 1.55430 1.32647 1.05624 1.21184 0.99369 0.96288 0.83097 1.20764 1.01573 0.99269 0.90911 1.19450 0.94863 0.96281 0.96680 1.20872 0.95879 1.00518 0.95314 1.20426 0.99906 0.96315 0.96301 1.18902 0.92893 0.97714 0.90554 1.18851 0.90549 0.92976 0.96981 1.20337 1.01248 0.95750 0.95203 1.86326 1.56719 1.50336 1.28801 1.23623 0.96135 1.03016 0.82708 1.23632 0.93337 0.84877 1.03727 1.86304 1.61237 1.33836 1.40999 1.43658 1.57880 1.08545 1.19267 1.20725 0.99292 0.82853 0.94558 1.19218 1.19943 1.09498 0.89851 0.91398 1.24932 0.98595 0.99518 0.96522 1.70118 1.35106 1.33780 1.15800 0.86213 0.81898 0.78372 0.79874 1.21540 1.20469 1.21812 0.92939 0.91494 0.93795 0.77155 0.91812 0.91902 0.90114 0.89945 0.84769 0.84740 0.84632 0.86060 0.90524 0.90391 0.86093 0.95693 0.97461 0.94061 0.93789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.09 37.15 0.34 -2.32 16 2 C 0.16 3.26 3.13 -69.08 -0.22 3.05 16 3 H 0.09 1.69 7.85 -51.93 -0.41 1.28 16 4 C 0.49 9.63 6.86 -10.99 -0.08 9.56 16 5 O -0.52 -12.74 14.60 5.56 0.08 -12.66 16 6 N -0.74 -10.41 5.45 -60.29 -0.33 -10.74 16 7 C 0.13 1.58 5.66 -4.04 -0.02 1.55 16 8 C -0.09 -0.77 5.46 -27.88 -0.15 -0.92 16 9 C -0.07 -0.70 5.13 -104.63 -0.54 -1.24 16 10 C -0.11 -1.00 9.69 -39.59 -0.38 -1.38 16 11 C -0.11 -1.08 9.96 -39.42 -0.39 -1.47 16 12 C 0.04 0.47 6.49 -39.14 -0.25 0.22 16 13 C 0.05 0.57 6.49 -39.14 -0.25 0.31 16 14 C -0.11 -1.12 9.62 -39.42 -0.38 -1.50 16 15 O -0.31 -3.14 10.42 -32.86 -0.34 -3.48 16 16 C 0.02 0.13 7.26 37.40 0.27 0.40 16 17 C 0.02 0.12 7.26 37.40 0.27 0.39 16 18 O -0.31 -3.03 10.42 -32.87 -0.34 -3.37 16 19 N -0.57 -15.08 2.59 -174.82 -0.45 -15.54 16 20 C 0.17 4.60 7.48 59.85 0.45 5.04 16 21 C -0.26 -7.25 9.61 -15.06 -0.14 -7.40 16 22 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 23 C 0.00 0.08 5.06 -17.43 -0.09 -0.01 16 24 N -0.90 -27.10 10.68 55.49 0.59 -26.51 16 25 Si 0.91 22.49 29.58 -169.99 -5.03 17.46 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H 0.05 0.96 7.67 -51.92 -0.40 0.56 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.04 0.57 7.57 -51.93 -0.39 0.17 16 32 H 0.39 4.20 7.89 -40.82 -0.32 3.88 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 36 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 37 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 39 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 40 H 0.12 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.12 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.02 0.70 7.41 -51.93 -0.38 0.31 16 45 H 0.01 0.18 6.42 -51.93 -0.33 -0.16 16 46 H 0.04 1.22 7.21 -51.93 -0.37 0.84 16 47 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 384.76 15.07 5.80 5.80 Total: -1.00 -36.35 384.76 -8.82 -45.17 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -7.23 Total: -0.41 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -1.57 Total: 4.29 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -0.19 Total: -52.79 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.60 Total: -19.52 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.35 -8.82 -45.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075828653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.479 kcal (2) G-P(sol) polarization free energy of solvation -36.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds