Wall clock time and date at job start Tue Mar 31 2020 18:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.46833 * 2 1 4 4 C 1.50698 * 109.47703 * 239.99916 * 2 1 3 5 5 O 1.21282 * 120.00014 * 240.00674 * 4 2 1 6 6 N 1.34776 * 119.99867 * 59.99379 * 4 2 1 7 7 C 1.46506 * 120.00044 * 180.02562 * 6 4 2 8 8 C 1.52995 * 109.46775 * 180.02562 * 7 6 4 9 9 C 1.50707 * 109.46639 * 179.97438 * 8 7 6 10 10 C 1.38248 * 119.94221 * 269.72687 * 9 8 7 11 11 C 1.38201 * 120.11416 * 179.78225 * 10 9 8 12 12 C 1.38700 * 120.06398 * 0.55523 * 11 10 9 13 13 C 1.38980 * 119.82218 * 359.62749 * 12 11 10 14 14 C 1.38203 * 119.94376 * 89.99990 * 9 8 7 15 15 O 1.36104 * 120.78566 * 180.26381 * 13 12 11 16 16 C 1.43174 * 116.71862 * 342.81813 * 15 13 12 17 17 C 1.53470 * 108.24961 * 46.15931 * 16 15 13 18 18 O 1.36109 * 119.39899 * 179.54094 * 12 11 10 19 19 N 1.46507 * 109.47083 * 119.99453 * 2 1 3 20 20 C 1.46499 * 119.99574 * 60.00561 * 19 2 1 21 21 C 1.36928 * 120.00171 * 240.00271 * 19 2 1 22 22 H 1.08002 * 120.00056 * 339.35974 * 21 19 2 23 23 C 1.38808 * 120.00081 * 159.36555 * 21 19 2 24 24 N 1.31620 * 119.99726 * 345.10691 * 23 21 19 25 25 Si 1.86807 * 120.00151 * 165.38854 * 23 21 19 26 26 H 1.48494 * 109.46879 * 265.52059 * 25 23 21 27 27 H 1.48498 * 109.46941 * 25.52507 * 25 23 21 28 28 H 1.48498 * 109.46778 * 145.52607 * 25 23 21 29 29 H 1.09007 * 109.47162 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47455 * 300.00121 * 1 2 3 31 31 H 1.09005 * 109.47578 * 60.00472 * 1 2 3 32 32 H 0.97003 * 119.99681 * 0.02562 * 6 4 2 33 33 H 1.09002 * 109.46668 * 300.00506 * 7 6 4 34 34 H 1.08997 * 109.46888 * 60.00447 * 7 6 4 35 35 H 1.09002 * 109.47542 * 299.99489 * 8 7 6 36 36 H 1.08997 * 109.47442 * 60.00303 * 8 7 6 37 37 H 1.08003 * 119.94663 * 0.02562 * 10 9 8 38 38 H 1.07991 * 119.97143 * 180.29025 * 11 10 9 39 39 H 1.07990 * 119.96247 * 359.97438 * 14 9 8 40 40 H 1.08997 * 109.71029 * 165.84759 * 16 15 13 41 41 H 1.09000 * 109.70549 * 286.47291 * 16 15 13 42 42 H 1.09003 * 109.70811 * 59.95137 * 17 16 15 43 43 H 1.08998 * 109.70864 * 180.57525 * 17 16 15 44 44 H 1.08997 * 109.46920 * 265.20373 * 20 19 2 45 45 H 1.09001 * 109.47507 * 25.20471 * 20 19 2 46 46 H 1.08998 * 109.47174 * 145.20448 * 20 19 2 47 47 H 0.97003 * 119.99943 * 180.27529 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1190 6 7 1.7067 -0.2500 -2.4545 7 6 2.1948 -0.9409 -3.6507 8 6 1.6853 -0.2193 -4.8999 9 6 2.1878 -0.9297 -6.1303 10 6 3.3935 -0.5598 -6.6966 11 6 3.8599 -1.2118 -7.8224 12 6 3.1136 -2.2317 -8.3938 13 6 1.8997 -2.6011 -7.8268 14 6 1.4399 -1.9460 -6.6940 15 8 1.1540 -3.6028 -8.3682 16 6 1.4662 -3.9831 -9.7127 17 6 2.9900 -4.1216 -9.8315 18 8 3.5813 -2.8584 -9.5079 19 7 2.0183 -0.6905 1.1963 20 6 1.6644 -2.0931 1.4281 21 6 2.8054 -0.0250 2.0976 22 1 3.3387 0.8643 1.7956 23 6 2.9181 -0.4934 3.3994 24 7 2.0626 -1.3839 3.8547 25 14 4.2792 0.1461 4.5076 26 1 5.4441 -0.7724 4.4412 27 1 4.6898 1.5000 4.0564 28 1 3.7855 0.2190 5.9062 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.1493 0.5388 -2.5435 33 1 3.2848 -0.9413 -3.6507 34 1 1.8311 -1.9684 -3.6505 35 1 0.5953 -0.2187 -4.9000 36 1 2.0493 0.8081 -4.8999 37 1 3.9739 0.2375 -6.2563 38 1 4.8043 -0.9241 -8.2601 39 1 0.4965 -2.2303 -6.2519 40 1 0.9913 -4.9364 -9.9447 41 1 1.1118 -3.2176 -10.4029 42 1 3.3452 -4.8827 -9.1366 43 1 3.2553 -4.4014 -10.8510 44 1 0.7855 -2.1446 2.0707 45 1 1.4464 -2.5752 0.4751 46 1 2.4979 -2.6031 1.9110 47 1 2.1389 -1.7083 4.7657 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075828653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:37 Heat of formation + Delta-G solvation = -83.380363 kcal Electronic energy + Delta-G solvation = -28099.929809 eV Core-core repulsion = 24055.286342 eV Total energy + Delta-G solvation = -4044.643467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.22416 -40.77624 -39.21392 -38.24978 -37.37221 -36.10484 -34.11459 -33.23847 -31.88024 -31.15559 -30.31919 -28.52483 -28.02013 -26.02947 -25.55161 -24.46206 -23.50024 -22.83090 -21.47201 -20.72911 -19.55743 -18.90420 -18.24717 -18.16132 -17.61856 -17.30883 -16.64502 -16.39143 -16.37479 -16.01594 -15.68648 -15.41018 -15.28522 -15.14015 -14.93703 -14.85314 -14.64327 -14.39598 -14.08031 -13.98401 -13.23515 -13.12406 -13.08263 -12.85571 -12.81804 -12.69175 -12.66320 -12.38780 -12.17431 -12.14880 -12.00154 -11.95103 -11.88225 -11.82336 -11.44873 -10.82282 -10.47325 -9.95373 -9.61905 -9.03494 -8.81093 -7.81901 -5.28329 0.22399 0.30012 1.45843 1.49858 1.57631 1.86201 2.04206 2.23077 2.34085 2.54725 2.69660 3.28336 3.32888 3.62976 3.66012 3.85753 3.91797 4.03232 4.07221 4.11830 4.21558 4.31356 4.32634 4.40711 4.43001 4.49327 4.55872 4.56637 4.68036 4.80349 4.84465 4.95933 5.03099 5.05618 5.12739 5.13771 5.18680 5.38324 5.43076 5.57021 5.59699 5.62732 5.67964 5.69144 5.89973 6.29005 6.39712 6.74605 7.12906 7.49336 7.85518 8.29142 9.22126 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024309 B = 0.001934 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.548175 B =14471.762608 C =14641.316441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.149 3.851 3 H 0.104 0.896 4 C 0.494 3.506 5 O -0.579 6.579 6 N -0.717 5.717 7 C 0.128 3.872 8 C -0.073 4.073 9 C -0.078 4.078 10 C -0.109 4.109 11 C -0.121 4.121 12 C 0.031 3.969 13 C 0.035 3.965 14 C -0.120 4.120 15 O -0.327 6.327 16 C 0.015 3.985 17 C 0.014 3.986 18 O -0.324 6.324 19 N -0.594 5.594 20 C 0.196 3.804 21 C -0.264 4.264 22 H 0.076 0.924 23 C -0.057 4.057 24 N -0.937 5.937 25 Si 0.972 3.028 26 H -0.295 1.295 27 H -0.261 1.261 28 H -0.292 1.292 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.416 0.584 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.139 0.861 40 H 0.151 0.849 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.155 0.845 44 H 0.006 0.994 45 H 0.016 0.984 46 H 0.003 0.997 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.323 1.745 -31.986 32.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.037 3.963 3 H 0.121 0.879 4 C 0.280 3.720 5 O -0.458 6.458 6 N -0.372 5.372 7 C 0.003 3.997 8 C -0.110 4.110 9 C -0.079 4.079 10 C -0.127 4.127 11 C -0.140 4.140 12 C -0.014 4.014 13 C -0.010 4.010 14 C -0.138 4.138 15 O -0.243 6.243 16 C -0.060 4.060 17 C -0.061 4.061 18 O -0.239 6.239 19 N -0.315 5.315 20 C 0.051 3.949 21 C -0.394 4.394 22 H 0.094 0.906 23 C -0.251 4.251 24 N -0.584 5.584 25 Si 0.800 3.200 26 H -0.222 1.222 27 H -0.186 1.186 28 H -0.218 1.218 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.254 0.746 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.172 0.828 38 H 0.165 0.835 39 H 0.157 0.843 40 H 0.168 0.832 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.172 0.828 44 H 0.024 0.976 45 H 0.034 0.966 46 H 0.022 0.978 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.842 0.918 -31.792 31.932 hybrid contribution 0.550 -0.282 0.736 0.961 sum -2.293 0.637 -31.056 31.147 Atomic orbital electron populations 1.22088 0.93528 1.01475 1.02977 1.20595 0.95361 0.96234 0.84089 0.87854 1.22362 0.79146 0.84427 0.86083 1.90629 1.39356 1.28444 1.87331 1.45971 1.54203 1.32661 1.04375 1.21225 0.98623 0.95943 0.83859 1.20679 1.02592 0.99620 0.88118 1.19567 0.95065 0.96275 0.97008 1.21152 0.95782 1.00728 0.95018 1.20708 1.00444 0.96200 0.96613 1.19141 0.93102 0.98179 0.90999 1.19058 0.91005 0.93478 0.97478 1.20545 1.01727 0.96173 0.95391 1.86283 1.57070 1.50185 1.30726 1.23942 0.96405 1.04561 0.81073 1.23934 0.93281 0.83417 1.05457 1.86272 1.61856 1.35155 1.40642 1.43830 1.58494 1.08276 1.20914 1.20289 0.96804 0.83848 0.93988 1.19608 1.20009 1.09472 0.90290 0.90605 1.25771 1.00859 1.00333 0.98185 1.70270 1.36816 1.35420 1.15869 0.85182 0.78659 0.78356 0.77828 1.22222 1.18564 1.21829 0.94401 0.92704 0.88469 0.74611 0.93174 0.93642 0.88326 0.87581 0.82814 0.83487 0.84279 0.83170 0.89989 0.90768 0.82794 0.97553 0.96559 0.97832 0.94313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.58 9.09 71.98 0.65 -3.92 16 2 C 0.15 5.89 3.13 44.24 0.14 6.03 16 3 H 0.10 3.73 7.85 -2.39 -0.02 3.72 16 4 C 0.49 18.75 6.86 87.66 0.60 19.36 16 5 O -0.58 -28.31 14.60 -3.04 -0.04 -28.35 16 6 N -0.72 -18.05 5.45 -463.06 -2.52 -20.58 16 7 C 0.13 2.98 5.66 86.38 0.49 3.46 16 8 C -0.07 -1.05 5.46 29.85 0.16 -0.89 16 9 C -0.08 -1.39 5.13 -19.87 -0.10 -1.49 16 10 C -0.11 -1.83 9.69 22.26 0.22 -1.61 16 11 C -0.12 -2.25 9.96 22.37 0.22 -2.02 16 12 C 0.03 0.65 6.49 22.56 0.15 0.79 16 13 C 0.03 0.75 6.49 22.56 0.15 0.90 16 14 C -0.12 -2.42 9.62 22.37 0.22 -2.21 16 15 O -0.33 -6.56 10.42 -82.51 -0.86 -7.42 16 16 C 0.01 0.16 7.26 72.14 0.52 0.69 16 17 C 0.01 0.15 7.26 72.14 0.52 0.68 16 18 O -0.32 -6.12 10.42 -82.57 -0.86 -6.98 16 19 N -0.59 -31.47 2.59 -707.02 -1.83 -33.30 16 20 C 0.20 10.95 7.48 127.77 0.96 11.90 16 21 C -0.26 -15.00 9.61 84.03 0.81 -14.20 16 22 H 0.08 4.09 7.81 -2.91 -0.02 4.06 16 23 C -0.06 -3.30 5.06 84.86 0.43 -2.87 16 24 N -0.94 -57.78 10.68 21.65 0.23 -57.55 16 25 Si 0.97 46.66 29.58 68.60 2.03 48.69 16 26 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 27 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 28 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 29 H 0.04 1.33 7.67 -2.38 -0.02 1.31 16 30 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.10 2.08 7.57 -2.38 -0.02 2.06 16 32 H 0.42 7.00 7.89 -92.71 -0.73 6.27 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.10 1.13 8.08 -2.39 -0.02 1.11 16 36 H 0.11 1.09 8.08 -2.39 -0.02 1.07 16 37 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 38 H 0.15 2.21 8.06 -2.92 -0.02 2.19 16 39 H 0.14 2.57 8.06 -2.92 -0.02 2.54 16 40 H 0.15 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 43 H 0.15 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.01 0.37 7.41 -2.39 -0.02 0.35 16 45 H 0.02 0.85 6.42 -2.39 -0.02 0.83 16 46 H 0.00 0.18 7.21 -2.39 -0.02 0.16 16 47 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -82.30 384.76 2.52 -79.78 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.25 Total: 11.11 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 6.13 Total: 14.60 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -4.12 Total: -111.43 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -1.76 Total: -42.76 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -82.30 2.52 -79.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075828653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.597 kcal (2) G-P(sol) polarization free energy of solvation -82.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds