Wall clock time and date at job start Tue Mar 31 2020 18:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.46957 * 2 1 4 4 N 1.46504 * 109.47384 * 239.99949 * 2 1 3 5 5 C 1.34776 * 119.99960 * 84.99834 * 4 2 1 6 6 O 1.21290 * 120.00074 * 0.02562 * 5 4 2 7 7 C 1.50702 * 120.00109 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.46793 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.46893 * 299.99844 * 7 5 4 10 10 C 1.52995 * 109.46889 * 60.00191 * 7 5 4 11 11 C 1.50698 * 109.47221 * 119.99896 * 2 1 3 12 12 O 1.21287 * 119.99921 * 120.00122 * 11 2 1 13 13 N 1.34775 * 120.00042 * 300.00128 * 11 2 1 14 14 C 1.39929 * 120.00075 * 174.77754 * 13 11 2 15 15 C 1.38965 * 120.03398 * 326.32814 * 14 13 11 16 16 C 1.38155 * 120.06365 * 180.02562 * 15 14 13 17 17 C 1.38164 * 120.13915 * 359.70143 * 16 15 14 18 18 C 1.38915 * 120.07296 * 0.55224 * 17 16 15 19 19 O 1.35744 * 120.03324 * 179.74379 * 18 17 16 20 20 C 1.34837 * 117.00045 * 173.82252 * 19 18 17 21 21 H 1.08008 * 119.99247 * 354.59667 * 20 19 18 22 22 C 1.38645 * 120.00152 * 174.59543 * 20 19 18 23 23 N 1.31557 * 120.00434 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99740 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47311 * 60.00292 * 24 22 20 26 26 H 1.48500 * 109.46786 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47127 * 299.99966 * 24 22 20 28 28 C 1.38710 * 120.03541 * 146.34700 * 14 13 11 29 29 H 1.09003 * 109.47195 * 60.00238 * 1 2 3 30 30 H 1.08997 * 109.47259 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47411 * 300.00278 * 1 2 3 32 32 H 0.96995 * 120.00085 * 264.99784 * 4 2 1 33 33 H 1.08991 * 109.47669 * 60.00049 * 8 7 5 34 34 H 1.09004 * 109.46311 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47364 * 299.99420 * 8 7 5 36 36 H 1.09005 * 109.46862 * 60.00104 * 9 7 5 37 37 H 1.09003 * 109.46485 * 179.97438 * 9 7 5 38 38 H 1.08991 * 109.47387 * 299.99840 * 9 7 5 39 39 H 1.09001 * 109.47333 * 59.99961 * 10 7 5 40 40 H 1.09002 * 109.46775 * 179.97438 * 10 7 5 41 41 H 1.09000 * 109.47332 * 299.99609 * 10 7 5 42 42 H 0.96999 * 119.99861 * 354.77740 * 13 11 2 43 43 H 1.08001 * 119.96861 * 0.02562 * 15 14 13 44 44 H 1.07997 * 119.92798 * 179.97438 * 16 15 14 45 45 H 1.08005 * 119.96546 * 180.29350 * 17 16 15 46 46 H 0.96991 * 120.00208 * 180.02562 * 23 22 20 47 47 H 1.08003 * 120.07093 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8590 1.1587 -2.4115 7 6 2.6489 -0.7288 -3.5878 8 6 2.7010 0.2546 -4.7587 9 6 4.0514 -1.2797 -3.3222 10 6 1.7044 -1.8823 -3.9314 11 6 2.0323 -0.7104 1.2305 12 8 2.7296 -1.6965 1.1192 13 7 1.7067 -0.2499 2.4545 14 6 2.0804 -0.9695 3.5950 15 6 2.1257 -2.3579 3.5575 16 6 2.4941 -3.0690 4.6833 17 6 2.8245 -2.4024 5.8475 18 6 2.7761 -1.0148 5.8929 19 8 3.0959 -0.3610 7.0388 20 6 3.1529 0.9849 6.9801 21 1 3.0350 1.4895 6.0324 22 6 3.3629 1.7209 8.1361 23 7 3.5070 1.1063 9.2903 24 14 3.4411 3.5856 8.0547 25 1 2.1588 4.1121 7.5222 26 1 3.6722 4.1311 9.4164 27 1 4.5540 3.9958 7.1611 28 6 2.4057 -0.2977 4.7641 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.2491 -1.6317 -1.1526 33 1 3.3741 1.0761 -4.5137 34 1 3.0636 -0.2595 -5.6489 35 1 1.7021 0.6474 -4.9481 36 1 4.0146 -1.9801 -2.4878 37 1 4.4141 -1.7940 -4.2122 38 1 4.7242 -0.4580 -3.0774 39 1 0.7052 -1.4898 -4.1205 40 1 2.0671 -2.3959 -4.8218 41 1 1.6676 -2.5828 -3.0971 42 1 1.2132 0.5803 2.5450 43 1 1.8727 -2.8816 2.6475 44 1 2.5282 -4.1479 4.6518 45 1 3.1167 -2.9609 6.7246 46 1 3.6535 1.6212 10.0990 47 1 2.3706 0.7813 4.7960 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077816348.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:37 Heat of formation + Delta-G solvation = -84.683570 kcal Electronic energy + Delta-G solvation = -28457.708490 eV Core-core repulsion = 24413.008512 eV Total energy + Delta-G solvation = -4044.699978 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.93678 -39.99649 -38.74070 -36.65918 -36.00241 -35.17953 -34.43205 -32.29133 -31.10556 -29.29771 -28.52315 -27.73564 -27.45971 -25.47596 -25.08835 -23.32237 -21.90948 -21.57451 -20.18661 -19.77157 -18.10944 -18.00401 -17.28500 -16.57848 -16.29746 -15.72283 -15.43931 -15.24828 -15.07813 -14.68592 -14.32645 -14.23892 -14.09904 -13.85885 -13.78914 -13.56231 -13.08379 -12.93032 -12.76873 -12.65291 -12.54739 -12.42318 -12.24210 -12.07313 -11.91858 -11.78597 -11.64813 -11.33164 -11.29692 -11.15812 -11.06656 -10.80309 -10.48792 -10.07916 -9.95881 -9.71027 -9.55337 -9.36411 -8.84387 -7.82010 -7.22957 -6.48679 -4.08760 1.82976 2.29558 2.34803 2.62374 2.69427 3.10255 3.11324 3.14123 3.24784 3.92957 4.21942 4.36183 4.43520 4.48620 4.53497 4.73182 4.83791 4.88494 5.06565 5.18052 5.22030 5.22408 5.28324 5.34992 5.43736 5.45941 5.50618 5.56390 5.63262 5.72907 5.80786 5.84482 5.91012 5.93746 5.98119 6.07033 6.15499 6.21002 6.55304 6.86523 6.89640 7.05716 7.22182 7.23387 7.36086 7.54195 7.72274 7.94275 7.95047 8.10009 8.96475 9.65707 10.69056 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016394 B = 0.002421 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.533376 B =11563.593638 C =12570.277561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.125 3.875 3 H 0.116 0.884 4 N -0.710 5.710 5 C 0.527 3.473 6 O -0.540 6.540 7 C -0.085 4.085 8 C -0.127 4.127 9 C -0.143 4.143 10 C -0.141 4.141 11 C 0.509 3.491 12 O -0.517 6.517 13 N -0.661 5.661 14 C 0.178 3.822 15 C -0.205 4.205 16 C -0.063 4.063 17 C -0.198 4.198 18 C 0.168 3.832 19 O -0.174 6.174 20 C -0.393 4.393 21 H 0.090 0.910 22 C 0.041 3.959 23 N -0.861 5.861 24 Si 0.940 3.060 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 C -0.254 4.254 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.410 0.590 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.409 0.591 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.119 0.881 46 H 0.271 0.729 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.000 -4.043 -23.738 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.016 3.984 3 H 0.133 0.867 4 N -0.364 5.364 5 C 0.313 3.687 6 O -0.416 6.416 7 C -0.088 4.088 8 C -0.185 4.185 9 C -0.201 4.201 10 C -0.199 4.199 11 C 0.295 3.705 12 O -0.392 6.392 13 N -0.306 5.306 14 C 0.086 3.914 15 C -0.226 4.226 16 C -0.082 4.082 17 C -0.218 4.218 18 C 0.113 3.887 19 O -0.077 6.077 20 C -0.470 4.470 21 H 0.107 0.893 22 C -0.164 4.164 23 N -0.496 5.496 24 Si 0.764 3.236 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.276 4.276 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.247 0.753 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.244 0.756 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.137 0.863 46 H 0.081 0.919 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.621 -3.903 -23.404 24.173 hybrid contribution -0.090 1.026 0.134 1.039 sum -4.711 -2.877 -23.270 23.916 Atomic orbital electron populations 1.22134 0.92518 1.03333 1.03781 1.20747 0.95824 0.98246 0.83574 0.86669 1.45776 1.67402 1.14911 1.08338 1.20627 0.76780 0.87039 0.84235 1.90698 1.49929 1.15936 1.85044 1.20810 0.97329 0.97050 0.93599 1.21666 1.03057 0.98180 0.95571 1.21898 0.94040 1.01459 1.02687 1.21882 0.98898 0.96647 1.02465 1.20592 0.80149 0.85181 0.84571 1.90717 1.36103 1.26111 1.86238 1.43390 1.56208 1.26471 1.04532 1.17385 0.98106 0.90842 0.85106 1.20494 1.11081 0.91776 0.99237 1.20522 0.97261 0.98594 0.91824 1.20268 1.10644 0.91706 0.99199 1.19086 0.91415 0.91631 0.86540 1.84020 1.75151 1.21213 1.27361 1.21223 1.51801 0.78359 0.95569 0.89291 1.25276 0.96507 1.00454 0.94167 1.70020 1.44645 1.36391 0.98509 0.85800 0.79139 0.80609 0.78002 1.19512 1.20230 1.19499 1.20821 1.12839 1.00513 0.93427 0.90685 0.91582 0.90684 0.75255 0.91859 0.91941 0.91917 0.91714 0.91212 0.91928 0.91989 0.91184 0.91957 0.75560 0.86437 0.86579 0.86321 0.91904 0.85178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.39 37.15 0.35 -1.04 16 2 C 0.12 1.34 2.98 -69.09 -0.21 1.13 16 3 H 0.12 1.27 7.58 -51.93 -0.39 0.88 16 4 N -0.71 -7.28 4.74 -54.93 -0.26 -7.54 16 5 C 0.53 5.69 6.45 -10.98 -0.07 5.62 16 6 O -0.54 -7.53 15.65 5.55 0.09 -7.45 16 7 C -0.08 -0.67 0.87 -155.66 -0.14 -0.80 16 8 C -0.13 -0.98 7.76 37.16 0.29 -0.69 16 9 C -0.14 -1.02 8.37 37.16 0.31 -0.71 16 10 C -0.14 -0.86 8.37 37.16 0.31 -0.54 16 11 C 0.51 6.90 6.96 -10.99 -0.08 6.83 16 12 O -0.52 -8.46 13.54 5.55 0.08 -8.38 16 13 N -0.66 -9.32 5.19 -9.88 -0.05 -9.38 16 14 C 0.18 3.26 6.27 -83.72 -0.52 2.73 16 15 C -0.21 -3.74 8.65 -39.34 -0.34 -4.08 16 16 C -0.06 -1.15 10.03 -39.64 -0.40 -1.54 16 17 C -0.20 -4.15 9.99 -39.36 -0.39 -4.54 16 18 C 0.17 3.98 6.64 -39.13 -0.26 3.72 16 19 O -0.17 -4.88 9.76 0.05 0.00 -4.87 16 20 C -0.39 -10.75 9.44 30.88 0.29 -10.46 16 21 H 0.09 2.23 5.30 -52.48 -0.28 1.96 16 22 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 23 N -0.86 -24.88 13.67 55.48 0.76 -24.12 16 24 Si 0.94 20.14 29.55 -169.99 -5.02 15.12 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 26 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 27 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 28 C -0.25 -5.35 9.04 -39.21 -0.35 -5.70 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.56 7.69 -51.93 -0.40 0.16 16 32 H 0.41 3.94 6.63 -40.82 -0.27 3.67 16 33 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 36 H 0.06 0.47 7.56 -51.93 -0.39 0.08 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.35 7.57 -51.93 -0.39 -0.04 16 42 H 0.41 4.55 8.40 -40.82 -0.34 4.21 16 43 H 0.12 2.04 6.43 -52.49 -0.34 1.70 16 44 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 45 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 46 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.13 2.69 5.72 -52.48 -0.30 2.39 16 LS Contribution 390.62 15.07 5.89 5.89 Total: -1.00 -33.33 390.62 -6.72 -40.05 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -6.89 Total: 9.78 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -1.30 Total: -9.09 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.45 Total: -41.03 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: 0.16 Total: -20.71 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.33 -6.72 -40.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077816348.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.636 kcal (2) G-P(sol) polarization free energy of solvation -33.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds