Wall clock time and date at job start Tue Mar 31 2020 18:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.46957 * 2 1 4 4 N 1.46504 * 109.47384 * 239.99949 * 2 1 3 5 5 C 1.34776 * 119.99960 * 84.99834 * 4 2 1 6 6 O 1.21290 * 120.00074 * 0.02562 * 5 4 2 7 7 C 1.50702 * 120.00109 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.46793 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.46893 * 299.99844 * 7 5 4 10 10 C 1.52995 * 109.46889 * 60.00191 * 7 5 4 11 11 C 1.50698 * 109.47221 * 119.99896 * 2 1 3 12 12 O 1.21287 * 119.99921 * 120.00122 * 11 2 1 13 13 N 1.34775 * 120.00042 * 300.00128 * 11 2 1 14 14 C 1.39929 * 120.00075 * 174.77754 * 13 11 2 15 15 C 1.38965 * 120.03398 * 326.32814 * 14 13 11 16 16 C 1.38155 * 120.06365 * 180.02562 * 15 14 13 17 17 C 1.38164 * 120.13915 * 359.70143 * 16 15 14 18 18 C 1.38915 * 120.07296 * 0.55224 * 17 16 15 19 19 O 1.35744 * 120.03324 * 179.74379 * 18 17 16 20 20 C 1.34837 * 117.00045 * 173.82252 * 19 18 17 21 21 H 1.08008 * 119.99247 * 354.59667 * 20 19 18 22 22 C 1.38645 * 120.00152 * 174.59543 * 20 19 18 23 23 N 1.31557 * 120.00434 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99740 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47311 * 60.00292 * 24 22 20 26 26 H 1.48500 * 109.46786 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47127 * 299.99966 * 24 22 20 28 28 C 1.38710 * 120.03541 * 146.34700 * 14 13 11 29 29 H 1.09003 * 109.47195 * 60.00238 * 1 2 3 30 30 H 1.08997 * 109.47259 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47411 * 300.00278 * 1 2 3 32 32 H 0.96995 * 120.00085 * 264.99784 * 4 2 1 33 33 H 1.08991 * 109.47669 * 60.00049 * 8 7 5 34 34 H 1.09004 * 109.46311 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47364 * 299.99420 * 8 7 5 36 36 H 1.09005 * 109.46862 * 60.00104 * 9 7 5 37 37 H 1.09003 * 109.46485 * 179.97438 * 9 7 5 38 38 H 1.08991 * 109.47387 * 299.99840 * 9 7 5 39 39 H 1.09001 * 109.47333 * 59.99961 * 10 7 5 40 40 H 1.09002 * 109.46775 * 179.97438 * 10 7 5 41 41 H 1.09000 * 109.47332 * 299.99609 * 10 7 5 42 42 H 0.96999 * 119.99861 * 354.77740 * 13 11 2 43 43 H 1.08001 * 119.96861 * 0.02562 * 15 14 13 44 44 H 1.07997 * 119.92798 * 179.97438 * 16 15 14 45 45 H 1.08005 * 119.96546 * 180.29350 * 17 16 15 46 46 H 0.96991 * 120.00208 * 180.02562 * 23 22 20 47 47 H 1.08003 * 120.07093 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8590 1.1587 -2.4115 7 6 2.6489 -0.7288 -3.5878 8 6 2.7010 0.2546 -4.7587 9 6 4.0514 -1.2797 -3.3222 10 6 1.7044 -1.8823 -3.9314 11 6 2.0323 -0.7104 1.2305 12 8 2.7296 -1.6965 1.1192 13 7 1.7067 -0.2499 2.4545 14 6 2.0804 -0.9695 3.5950 15 6 2.1257 -2.3579 3.5575 16 6 2.4941 -3.0690 4.6833 17 6 2.8245 -2.4024 5.8475 18 6 2.7761 -1.0148 5.8929 19 8 3.0959 -0.3610 7.0388 20 6 3.1529 0.9849 6.9801 21 1 3.0350 1.4895 6.0324 22 6 3.3629 1.7209 8.1361 23 7 3.5070 1.1063 9.2903 24 14 3.4411 3.5856 8.0547 25 1 2.1588 4.1121 7.5222 26 1 3.6722 4.1311 9.4164 27 1 4.5540 3.9958 7.1611 28 6 2.4057 -0.2977 4.7641 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.2491 -1.6317 -1.1526 33 1 3.3741 1.0761 -4.5137 34 1 3.0636 -0.2595 -5.6489 35 1 1.7021 0.6474 -4.9481 36 1 4.0146 -1.9801 -2.4878 37 1 4.4141 -1.7940 -4.2122 38 1 4.7242 -0.4580 -3.0774 39 1 0.7052 -1.4898 -4.1205 40 1 2.0671 -2.3959 -4.8218 41 1 1.6676 -2.5828 -3.0971 42 1 1.2132 0.5803 2.5450 43 1 1.8727 -2.8816 2.6475 44 1 2.5282 -4.1479 4.6518 45 1 3.1167 -2.9609 6.7246 46 1 3.6535 1.6212 10.0990 47 1 2.3706 0.7813 4.7960 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077816348.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:36 Heat of formation + Delta-G solvation = -107.105062 kcal Electronic energy + Delta-G solvation = -28458.680759 eV Core-core repulsion = 24413.008512 eV Total energy + Delta-G solvation = -4045.672247 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.00771 -41.11788 -40.31766 -38.24326 -36.72790 -36.14399 -35.80023 -34.24322 -32.08195 -30.83988 -30.03607 -28.23695 -28.04207 -27.34347 -26.07617 -24.34294 -23.53198 -22.80195 -21.36343 -20.74469 -19.74199 -19.45910 -18.41610 -17.71937 -17.31889 -16.98720 -16.77351 -16.57012 -16.22464 -15.97158 -15.74323 -15.57769 -15.41728 -14.82169 -14.77346 -14.61873 -14.56249 -14.18162 -13.81396 -13.54501 -13.44653 -13.30647 -13.22818 -13.08156 -12.90726 -12.83604 -12.71214 -12.63426 -12.61474 -12.39568 -12.14774 -11.91585 -11.87055 -11.53932 -11.29269 -11.02246 -10.78465 -10.72053 -10.29630 -9.38686 -8.90300 -8.46969 -6.15775 0.34264 0.68253 1.35683 1.38893 1.45926 1.51336 1.52189 1.67232 2.17238 2.26130 2.82434 3.15690 3.32515 3.48918 3.57420 3.82028 3.88435 3.94787 4.01879 4.11123 4.25916 4.31403 4.42619 4.58435 4.61622 4.67988 4.69630 4.71396 4.73386 4.82394 4.93852 4.94931 5.00719 5.01371 5.09663 5.11381 5.18439 5.25133 5.31999 5.34983 5.37299 5.42465 5.64295 5.66297 6.00815 6.13147 6.31920 6.40676 6.91335 6.97462 7.11617 7.76729 8.75635 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016394 B = 0.002421 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.533376 B =11563.593638 C =12570.277561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.132 3.868 3 H 0.114 0.886 4 N -0.707 5.707 5 C 0.523 3.477 6 O -0.575 6.575 7 C -0.082 4.082 8 C -0.126 4.126 9 C -0.141 4.141 10 C -0.138 4.138 11 C 0.515 3.485 12 O -0.542 6.542 13 N -0.654 5.654 14 C 0.186 3.814 15 C -0.195 4.195 16 C -0.051 4.051 17 C -0.213 4.213 18 C 0.133 3.867 19 O -0.226 6.226 20 C -0.413 4.413 21 H 0.102 0.898 22 C -0.021 4.021 23 N -0.918 5.918 24 Si 1.016 2.984 25 H -0.254 1.254 26 H -0.273 1.273 27 H -0.260 1.260 28 C -0.260 4.260 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.415 0.585 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.058 0.942 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.424 0.576 43 H 0.136 0.864 44 H 0.156 0.844 45 H 0.119 0.881 46 H 0.273 0.727 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.784 -4.531 -26.804 27.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.023 3.977 3 H 0.132 0.868 4 N -0.361 5.361 5 C 0.311 3.689 6 O -0.454 6.454 7 C -0.085 4.085 8 C -0.183 4.183 9 C -0.199 4.199 10 C -0.196 4.196 11 C 0.303 3.697 12 O -0.418 6.418 13 N -0.300 5.300 14 C 0.092 3.908 15 C -0.216 4.216 16 C -0.069 4.069 17 C -0.232 4.232 18 C 0.081 3.919 19 O -0.132 6.132 20 C -0.489 4.489 21 H 0.119 0.881 22 C -0.219 4.219 23 N -0.556 5.556 24 Si 0.835 3.165 25 H -0.178 1.178 26 H -0.198 1.198 27 H -0.185 1.185 28 C -0.281 4.281 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.253 0.747 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.262 0.738 43 H 0.153 0.847 44 H 0.173 0.827 45 H 0.137 0.863 46 H 0.082 0.918 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.432 -4.418 -26.532 27.441 hybrid contribution 0.114 0.957 0.834 1.274 sum -5.318 -3.462 -25.698 26.470 Atomic orbital electron populations 1.22114 0.90601 1.03942 1.04488 1.20723 0.97125 0.97568 0.82282 0.86843 1.45805 1.67101 1.15070 1.08076 1.21217 0.75959 0.86700 0.84981 1.90681 1.51594 1.17542 1.85627 1.20870 0.98109 0.97475 0.92079 1.21670 1.02235 0.97948 0.96494 1.21903 0.93218 1.01045 1.03702 1.21887 0.98245 0.95908 1.03529 1.21043 0.79202 0.84697 0.84805 1.90704 1.37139 1.27386 1.86584 1.43350 1.56158 1.26895 1.03617 1.17410 0.96674 0.91280 0.85454 1.20859 1.09199 0.91808 0.99726 1.20935 0.95083 1.00550 0.90374 1.20510 1.11271 0.90905 1.00559 1.19629 0.92788 0.92897 0.86552 1.83984 1.77897 1.21663 1.29641 1.21728 1.51969 0.78758 0.96440 0.88121 1.26549 0.95862 1.05963 0.93481 1.70168 1.47390 1.38598 0.99450 0.84686 0.79916 0.73600 0.78281 1.17821 1.19786 1.18480 1.20853 1.13002 1.00494 0.93769 0.90801 0.90992 0.89201 0.74699 0.93463 0.89541 0.92819 0.91802 0.89053 0.93248 0.92290 0.89257 0.91471 0.73753 0.84652 0.82673 0.86326 0.91814 0.85396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.39 71.98 0.68 -1.61 16 2 C 0.13 2.55 2.98 44.24 0.13 2.68 16 3 H 0.11 2.32 7.58 -2.39 -0.02 2.30 16 4 N -0.71 -13.19 4.74 -446.09 -2.11 -15.30 16 5 C 0.52 10.62 6.45 87.66 0.56 11.18 16 6 O -0.58 -15.69 15.65 -3.06 -0.05 -15.74 16 7 C -0.08 -1.14 0.87 -52.93 -0.05 -1.19 16 8 C -0.13 -1.76 7.76 71.98 0.56 -1.20 16 9 C -0.14 -1.72 8.37 71.98 0.60 -1.12 16 10 C -0.14 -1.30 8.37 71.98 0.60 -0.70 16 11 C 0.51 12.75 6.96 87.66 0.61 13.35 16 12 O -0.54 -16.37 13.54 -3.05 -0.04 -16.41 16 13 N -0.65 -16.99 5.19 -303.56 -1.58 -18.57 16 14 C 0.19 6.48 6.27 38.14 0.24 6.71 16 15 C -0.20 -6.59 8.65 22.42 0.19 -6.40 16 16 C -0.05 -1.73 10.03 22.23 0.22 -1.51 16 17 C -0.21 -8.93 9.99 22.41 0.22 -8.70 16 18 C 0.13 6.47 6.64 22.56 0.15 6.62 16 19 O -0.23 -13.28 9.76 -22.74 -0.22 -13.50 16 20 C -0.41 -23.43 9.44 67.92 0.64 -22.79 16 21 H 0.10 5.19 5.30 -2.91 -0.02 5.18 16 22 C -0.02 -1.15 5.49 84.83 0.47 -0.68 16 23 N -0.92 -55.51 13.67 21.61 0.30 -55.22 16 24 Si 1.02 41.92 29.55 68.60 2.03 43.94 16 25 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 26 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 27 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 28 C -0.26 -10.93 9.04 22.51 0.20 -10.72 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.09 1.08 7.69 -2.39 -0.02 1.06 16 32 H 0.41 7.06 6.63 -92.71 -0.61 6.45 16 33 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 34 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 36 H 0.06 0.79 7.56 -2.38 -0.02 0.77 16 37 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.07 0.57 7.57 -2.39 -0.02 0.55 16 42 H 0.42 8.48 8.40 -92.71 -0.78 7.70 16 43 H 0.14 4.19 6.43 -2.91 -0.02 4.17 16 44 H 0.16 4.05 8.06 -2.91 -0.02 4.02 16 45 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 46 H 0.27 15.16 8.31 -92.72 -0.77 14.39 16 47 H 0.13 5.34 5.72 -2.91 -0.02 5.32 16 Total: -1.00 -75.77 390.62 3.97 -71.80 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: -0.39 Total: 35.06 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: 6.04 Total: -16.06 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -3.39 Total: -89.08 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -0.31 Total: -45.66 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -75.77 3.97 -71.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077816348.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.307 kcal (2) G-P(sol) polarization free energy of solvation -75.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds