Wall clock time and date at job start Tue Mar 31 2020 18:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47380 * 2 1 4 4 C 1.50705 * 109.46890 * 240.00056 * 2 1 3 5 5 O 1.21286 * 120.00066 * 240.00569 * 4 2 1 6 6 N 1.34775 * 119.99992 * 60.00016 * 4 2 1 7 7 C 1.46497 * 120.00109 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47035 * 180.02562 * 7 6 4 9 9 H 1.08998 * 109.70693 * 59.41378 * 8 7 6 10 10 C 1.53477 * 109.70955 * 180.02562 * 8 7 6 11 11 O 1.43174 * 108.25102 * 179.41592 * 10 8 7 12 12 C 1.36098 * 116.71660 * 313.83251 * 11 10 8 13 13 C 1.38698 * 119.40113 * 197.17947 * 12 11 10 14 14 C 1.38194 * 120.07225 * 180.21218 * 13 12 11 15 15 C 1.38261 * 120.11097 * 359.92317 * 14 13 12 16 16 C 1.38192 * 120.11110 * 359.97438 * 15 14 13 17 17 C 1.38705 * 120.06561 * 0.02562 * 16 15 14 18 18 O 1.36103 * 119.39075 * 180.27757 * 17 16 15 19 19 N 1.46902 * 109.47293 * 120.00439 * 2 1 3 20 20 C 1.46898 * 111.00091 * 58.94954 * 19 2 1 21 21 C 1.46904 * 110.99718 * 294.99570 * 19 2 1 22 22 C 1.50696 * 109.46794 * 189.99658 * 21 19 2 23 23 H 1.07999 * 120.00319 * 0.02562 * 22 21 19 24 24 C 1.37885 * 119.99717 * 179.97438 * 22 21 19 25 25 N 1.31516 * 119.99913 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 119.99766 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47353 * 269.99586 * 26 24 22 28 28 H 1.48501 * 109.47293 * 30.00037 * 26 24 22 29 29 H 1.48504 * 109.46680 * 149.99835 * 26 24 22 30 30 H 1.09001 * 109.47345 * 59.99854 * 1 2 3 31 31 H 1.08995 * 109.47380 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46907 * 299.99953 * 1 2 3 33 33 H 0.97001 * 119.99626 * 359.97438 * 6 4 2 34 34 H 1.08999 * 109.47143 * 299.99971 * 7 6 4 35 35 H 1.09004 * 109.46799 * 60.00295 * 7 6 4 36 36 H 1.09000 * 109.70646 * 299.11606 * 10 8 7 37 37 H 1.09010 * 109.70430 * 59.72840 * 10 8 7 38 38 H 1.08009 * 119.96584 * 0.14956 * 13 12 11 39 39 H 1.08000 * 119.94782 * 179.97438 * 14 13 12 40 40 H 1.07998 * 119.93994 * 179.97438 * 15 14 13 41 41 H 1.07996 * 119.96699 * 179.97438 * 16 15 14 42 42 H 1.09003 * 109.47196 * 296.04746 * 20 19 2 43 43 H 1.09000 * 109.47648 * 56.04693 * 20 19 2 44 44 H 1.08999 * 109.47258 * 176.05056 * 20 19 2 45 45 H 1.09005 * 109.47078 * 69.99943 * 21 19 2 46 46 H 1.09002 * 109.47005 * 310.00158 * 21 19 2 47 47 H 0.97001 * 119.99646 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6966 -1.1193 6 7 1.7067 -0.2500 -2.4546 7 6 2.1954 -0.9402 -3.6508 8 6 1.6857 -0.2186 -4.9000 9 1 2.0383 0.8128 -4.8982 10 6 2.1942 -0.9378 -6.1568 11 8 1.6890 -0.2465 -7.3043 12 6 0.3695 0.0864 -7.2863 13 6 -0.2643 0.4225 -8.4733 14 6 -1.6026 0.7671 -8.4704 15 6 -2.3139 0.7762 -7.2848 16 6 -1.6890 0.4403 -6.0989 17 6 -0.3460 0.0936 -6.0949 18 8 0.2542 -0.2403 -4.9199 19 7 2.0197 -0.6926 1.1994 20 6 1.5283 -2.0762 1.2459 21 6 1.6488 0.0391 2.4181 22 6 2.3680 -0.5573 3.6004 23 1 3.0342 -1.3957 3.4606 24 6 2.1761 -0.0319 4.8607 25 7 2.8041 -0.5521 5.8926 26 14 1.0243 1.4186 5.1025 27 1 1.7868 2.6851 4.9615 28 1 -0.0517 1.3721 4.0801 29 1 0.4220 1.3518 6.4583 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.1487 0.5385 -2.5435 34 1 3.2854 -0.9398 -3.6507 35 1 1.8324 -1.9680 -3.6509 36 1 3.2840 -0.9267 -6.1711 37 1 1.8365 -1.9675 -6.1611 38 1 0.2890 0.4160 -9.4009 39 1 -2.0939 1.0288 -9.3958 40 1 -3.3595 1.0463 -7.2856 41 1 -2.2467 0.4486 -5.1741 42 1 0.4419 -2.0731 1.3347 43 1 1.8166 -2.5951 0.3317 44 1 1.9617 -2.5870 2.1058 45 1 0.5723 -0.0345 2.5726 46 1 1.9299 1.0869 2.3125 47 1 2.6694 -0.1822 6.7791 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083217770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:18 Heat of formation + Delta-G solvation = -61.207359 kcal Electronic energy + Delta-G solvation = -28614.775872 eV Core-core repulsion = 24571.093899 eV Total energy + Delta-G solvation = -4043.681973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.74510 -39.91769 -38.25418 -37.72528 -36.67133 -34.96679 -32.70397 -32.07890 -31.07103 -30.31973 -29.16284 -27.65361 -26.59200 -25.37159 -24.19244 -23.26612 -22.91261 -21.24657 -20.64970 -19.37178 -19.19991 -17.99596 -17.49897 -16.94968 -16.65025 -16.16375 -15.66938 -15.45950 -15.38380 -15.01352 -14.82286 -14.44562 -14.38413 -14.25554 -14.13491 -13.87037 -13.69122 -13.14604 -13.09782 -12.90424 -12.53614 -12.32767 -12.22335 -11.95354 -11.72831 -11.62203 -11.43995 -11.26967 -11.09913 -10.92640 -10.88006 -10.53738 -10.43298 -9.92018 -9.35678 -9.22389 -9.07458 -9.04710 -8.55264 -8.49526 -7.31531 -6.02774 -3.99853 0.87787 0.89145 2.47508 2.70772 2.84838 3.01311 3.28099 3.30796 3.35489 3.35953 3.80244 4.12192 4.19495 4.27652 4.42400 4.58173 4.66091 4.79859 4.82710 4.89636 4.91474 4.98709 5.02768 5.17787 5.28221 5.33214 5.36238 5.43733 5.46561 5.73301 5.75520 5.78563 5.94064 6.05742 6.19417 6.20757 6.24099 6.36686 6.43279 6.48916 6.81343 6.92559 6.98165 7.06632 7.42854 7.60239 7.91631 8.03585 8.40950 8.68016 9.08038 9.58149 11.10431 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023504 B = 0.002186 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.007918 B =12804.521317 C =13618.458041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.062 3.938 3 H 0.102 0.898 4 C 0.523 3.477 5 O -0.514 6.514 6 N -0.734 5.734 7 C 0.133 3.867 8 C 0.040 3.960 9 H 0.094 0.906 10 C 0.030 3.970 11 O -0.305 6.305 12 C 0.047 3.953 13 C -0.115 4.115 14 C -0.118 4.118 15 C -0.116 4.116 16 C -0.113 4.113 17 C 0.054 3.946 18 O -0.299 6.299 19 N -0.508 5.508 20 C 0.024 3.976 21 C 0.162 3.838 22 C -0.507 4.507 23 H 0.082 0.918 24 C 0.067 3.933 25 N -0.900 5.900 26 Si 0.875 3.125 27 H -0.276 1.276 28 H -0.268 1.268 29 H -0.286 1.286 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.402 0.598 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.128 0.872 37 H 0.083 0.917 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.009 0.991 43 H 0.074 0.926 44 H 0.076 0.924 45 H -0.007 1.007 46 H 0.023 0.977 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.805 3.783 -31.167 32.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.051 4.051 3 H 0.119 0.881 4 C 0.310 3.690 5 O -0.388 6.388 6 N -0.390 5.390 7 C 0.009 3.991 8 C -0.017 4.017 9 H 0.112 0.888 10 C -0.046 4.046 11 O -0.219 6.219 12 C 0.002 3.998 13 C -0.133 4.133 14 C -0.136 4.136 15 C -0.134 4.134 16 C -0.132 4.132 17 C 0.009 3.991 18 O -0.214 6.214 19 N -0.231 5.231 20 C -0.123 4.123 21 C 0.036 3.964 22 C -0.545 4.545 23 H 0.100 0.900 24 C -0.134 4.134 25 N -0.539 5.539 26 Si 0.702 3.298 27 H -0.202 1.202 28 H -0.193 1.193 29 H -0.212 1.212 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.237 0.763 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.146 0.854 37 H 0.101 0.899 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.153 0.847 42 H 0.027 0.973 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.010 0.990 46 H 0.041 0.959 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.670 3.013 -30.842 31.924 hybrid contribution -1.616 1.235 0.367 2.067 sum -9.286 4.249 -30.475 32.140 Atomic orbital electron populations 1.22429 0.96201 1.02977 1.02609 1.21675 0.93598 0.99086 0.90713 0.88060 1.20815 0.79677 0.84560 0.83950 1.90645 1.36454 1.25608 1.86097 1.45902 1.55182 1.32899 1.04987 1.21203 0.99588 0.96766 0.81530 1.23454 0.80023 1.01622 0.96586 0.88844 1.23593 1.01534 0.95901 0.83578 1.86327 1.21246 1.73156 1.41177 1.18957 0.84379 1.02933 0.93507 1.20461 0.94582 1.02464 0.95807 1.20940 0.93230 1.00809 0.98628 1.20956 1.00273 1.00540 0.91629 1.20507 0.91820 1.01148 0.99716 1.18952 0.93721 1.02308 0.84144 1.86374 1.20074 1.84570 1.30393 1.61959 1.58322 1.02420 1.00374 1.22519 0.96121 0.90201 1.03504 1.20241 0.94398 0.93926 0.87816 1.21030 1.26585 1.17504 0.89398 0.89997 1.24906 0.95763 0.96839 0.95926 1.69897 1.42896 1.41732 0.99370 0.86871 0.81742 0.83572 0.77598 1.20168 1.19307 1.21223 0.92484 0.91799 0.90990 0.76312 0.88915 0.90248 0.85438 0.89903 0.84835 0.85063 0.85014 0.84666 0.97250 0.90800 0.90482 0.98971 0.95944 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 8.40 37.16 0.31 -2.32 16 2 C 0.06 1.04 2.77 -68.86 -0.19 0.85 16 3 H 0.10 1.56 8.03 -51.93 -0.42 1.14 16 4 C 0.52 8.18 6.85 -10.98 -0.08 8.10 16 5 O -0.51 -9.91 13.92 5.55 0.08 -9.83 16 6 N -0.73 -8.20 5.36 -60.29 -0.32 -8.52 16 7 C 0.13 1.22 5.39 -4.04 -0.02 1.20 16 8 C 0.04 0.31 3.10 -26.48 -0.08 0.23 16 9 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 10 C 0.03 0.21 6.56 37.40 0.25 0.45 16 11 O -0.30 -2.80 10.42 -32.84 -0.34 -3.14 16 12 C 0.05 0.45 6.49 -39.14 -0.25 0.19 16 13 C -0.11 -0.90 9.96 -39.43 -0.39 -1.29 16 14 C -0.12 -0.76 10.04 -39.59 -0.40 -1.16 16 15 C -0.12 -0.78 10.04 -39.59 -0.40 -1.18 16 16 C -0.11 -0.95 9.96 -39.43 -0.39 -1.34 16 17 C 0.05 0.52 6.49 -39.14 -0.25 0.27 16 18 O -0.30 -2.94 9.88 -32.86 -0.32 -3.26 16 19 N -0.51 -11.04 4.53 -237.72 -1.08 -12.12 16 20 C 0.02 0.52 8.42 60.06 0.51 1.02 16 21 C 0.16 3.93 3.23 -4.98 -0.02 3.92 16 22 C -0.51 -14.64 9.07 -34.44 -0.31 -14.95 16 23 H 0.08 2.61 7.35 -52.49 -0.39 2.23 16 24 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 25 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 26 Si 0.87 21.39 27.47 -169.99 -4.67 16.72 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 H 0.06 0.63 7.56 -51.93 -0.39 0.24 16 31 H 0.06 0.96 6.47 -51.93 -0.34 0.63 16 32 H 0.07 1.12 6.75 -51.92 -0.35 0.77 16 33 H 0.40 3.73 7.81 -40.82 -0.32 3.41 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.55 8.14 -51.92 -0.42 0.12 16 38 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 39 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 41 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.01 0.18 6.51 -51.93 -0.34 -0.16 16 43 H 0.07 1.52 5.37 -51.93 -0.28 1.24 16 44 H 0.08 1.80 6.86 -51.93 -0.36 1.44 16 45 H -0.01 -0.18 5.99 -51.93 -0.31 -0.49 16 46 H 0.02 0.54 7.43 -51.93 -0.39 0.15 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 375.90 15.07 5.66 5.66 Total: -1.00 -35.12 375.90 -8.88 -44.01 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -6.84 Total: 1.69 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -1.82 Total: -4.15 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.63 Total: -47.71 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.59 Total: -16.23 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.12 -8.88 -44.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.201 kcal (2) G-P(sol) polarization free energy of solvation -35.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds