Wall clock time and date at job start Tue Mar 31 2020 18:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47380 * 2 1 4 4 C 1.50705 * 109.46890 * 240.00056 * 2 1 3 5 5 O 1.21286 * 120.00066 * 240.00569 * 4 2 1 6 6 N 1.34775 * 119.99992 * 60.00016 * 4 2 1 7 7 C 1.46497 * 120.00109 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47035 * 180.02562 * 7 6 4 9 9 H 1.08998 * 109.70693 * 59.41378 * 8 7 6 10 10 C 1.53477 * 109.70955 * 180.02562 * 8 7 6 11 11 O 1.43174 * 108.25102 * 179.41592 * 10 8 7 12 12 C 1.36098 * 116.71660 * 313.83251 * 11 10 8 13 13 C 1.38698 * 119.40113 * 197.17947 * 12 11 10 14 14 C 1.38194 * 120.07225 * 180.21218 * 13 12 11 15 15 C 1.38261 * 120.11097 * 359.92317 * 14 13 12 16 16 C 1.38192 * 120.11110 * 359.97438 * 15 14 13 17 17 C 1.38705 * 120.06561 * 0.02562 * 16 15 14 18 18 O 1.36103 * 119.39075 * 180.27757 * 17 16 15 19 19 N 1.46902 * 109.47293 * 120.00439 * 2 1 3 20 20 C 1.46898 * 111.00091 * 58.94954 * 19 2 1 21 21 C 1.46904 * 110.99718 * 294.99570 * 19 2 1 22 22 C 1.50696 * 109.46794 * 189.99658 * 21 19 2 23 23 H 1.07999 * 120.00319 * 0.02562 * 22 21 19 24 24 C 1.37885 * 119.99717 * 179.97438 * 22 21 19 25 25 N 1.31516 * 119.99913 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 119.99766 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47353 * 269.99586 * 26 24 22 28 28 H 1.48501 * 109.47293 * 30.00037 * 26 24 22 29 29 H 1.48504 * 109.46680 * 149.99835 * 26 24 22 30 30 H 1.09001 * 109.47345 * 59.99854 * 1 2 3 31 31 H 1.08995 * 109.47380 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46907 * 299.99953 * 1 2 3 33 33 H 0.97001 * 119.99626 * 359.97438 * 6 4 2 34 34 H 1.08999 * 109.47143 * 299.99971 * 7 6 4 35 35 H 1.09004 * 109.46799 * 60.00295 * 7 6 4 36 36 H 1.09000 * 109.70646 * 299.11606 * 10 8 7 37 37 H 1.09010 * 109.70430 * 59.72840 * 10 8 7 38 38 H 1.08009 * 119.96584 * 0.14956 * 13 12 11 39 39 H 1.08000 * 119.94782 * 179.97438 * 14 13 12 40 40 H 1.07998 * 119.93994 * 179.97438 * 15 14 13 41 41 H 1.07996 * 119.96699 * 179.97438 * 16 15 14 42 42 H 1.09003 * 109.47196 * 296.04746 * 20 19 2 43 43 H 1.09000 * 109.47648 * 56.04693 * 20 19 2 44 44 H 1.08999 * 109.47258 * 176.05056 * 20 19 2 45 45 H 1.09005 * 109.47078 * 69.99943 * 21 19 2 46 46 H 1.09002 * 109.47005 * 310.00158 * 21 19 2 47 47 H 0.97001 * 119.99646 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6966 -1.1193 6 7 1.7067 -0.2500 -2.4546 7 6 2.1954 -0.9402 -3.6508 8 6 1.6857 -0.2186 -4.9000 9 1 2.0383 0.8128 -4.8982 10 6 2.1942 -0.9378 -6.1568 11 8 1.6890 -0.2465 -7.3043 12 6 0.3695 0.0864 -7.2863 13 6 -0.2643 0.4225 -8.4733 14 6 -1.6026 0.7671 -8.4704 15 6 -2.3139 0.7762 -7.2848 16 6 -1.6890 0.4403 -6.0989 17 6 -0.3460 0.0936 -6.0949 18 8 0.2542 -0.2403 -4.9199 19 7 2.0197 -0.6926 1.1994 20 6 1.5283 -2.0762 1.2459 21 6 1.6488 0.0391 2.4181 22 6 2.3680 -0.5573 3.6004 23 1 3.0342 -1.3957 3.4606 24 6 2.1761 -0.0319 4.8607 25 7 2.8041 -0.5521 5.8926 26 14 1.0243 1.4186 5.1025 27 1 1.7868 2.6851 4.9615 28 1 -0.0517 1.3721 4.0801 29 1 0.4220 1.3518 6.4583 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.1487 0.5385 -2.5435 34 1 3.2854 -0.9398 -3.6507 35 1 1.8324 -1.9680 -3.6509 36 1 3.2840 -0.9267 -6.1711 37 1 1.8365 -1.9675 -6.1611 38 1 0.2890 0.4160 -9.4009 39 1 -2.0939 1.0288 -9.3958 40 1 -3.3595 1.0463 -7.2856 41 1 -2.2467 0.4486 -5.1741 42 1 0.4419 -2.0731 1.3347 43 1 1.8166 -2.5951 0.3317 44 1 1.9617 -2.5870 2.1058 45 1 0.5723 -0.0345 2.5726 46 1 1.9299 1.0869 2.3125 47 1 2.6694 -0.1822 6.7791 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083217770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:17 Heat of formation + Delta-G solvation = -87.473825 kcal Electronic energy + Delta-G solvation = -28615.914871 eV Core-core repulsion = 24571.093899 eV Total energy + Delta-G solvation = -4044.820973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.35288 -41.16765 -38.90137 -38.37730 -38.10010 -35.99283 -34.76167 -33.06244 -31.72287 -31.53968 -29.86835 -29.50748 -27.36758 -26.92315 -25.29265 -24.30380 -23.64178 -22.26796 -21.80286 -20.70441 -19.83340 -19.09615 -18.57228 -18.21458 -17.80815 -17.11057 -16.67381 -16.38760 -16.16805 -16.12004 -15.85931 -15.63455 -15.51232 -15.41575 -15.04248 -14.87399 -14.75226 -14.66787 -14.38924 -13.92487 -13.70450 -13.49329 -13.15950 -12.94403 -12.83425 -12.78463 -12.73776 -12.51228 -12.29667 -12.16221 -12.13309 -12.02061 -11.83506 -11.50488 -11.48112 -10.76727 -10.59845 -10.14894 -9.63746 -9.08716 -8.97918 -8.26354 -6.30634 0.31573 0.32839 1.36299 1.39150 1.49445 1.61272 1.81796 2.05867 2.17799 2.36343 2.75347 3.06245 3.15860 3.28263 3.46383 3.60523 3.71204 3.81518 4.07285 4.11667 4.14462 4.18372 4.26136 4.38263 4.44227 4.47315 4.52805 4.55815 4.61086 4.65402 4.70725 4.79891 4.88479 4.90569 5.01815 5.18553 5.21354 5.21485 5.24151 5.39280 5.53457 5.53857 5.71807 5.88927 5.96193 6.27181 6.38054 6.46160 6.68327 6.75969 7.24459 7.32522 8.90758 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023504 B = 0.002186 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.007918 B =12804.521317 C =13618.458041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.057 3.943 3 H 0.119 0.881 4 C 0.527 3.473 5 O -0.558 6.558 6 N -0.714 5.714 7 C 0.135 3.865 8 C 0.048 3.952 9 H 0.102 0.898 10 C 0.028 3.972 11 O -0.317 6.317 12 C 0.026 3.974 13 C -0.125 4.125 14 C -0.115 4.115 15 C -0.115 4.115 16 C -0.127 4.127 17 C 0.033 3.967 18 O -0.314 6.314 19 N -0.533 5.533 20 C 0.037 3.963 21 C 0.175 3.825 22 C -0.520 4.520 23 H 0.029 0.971 24 C 0.002 3.998 25 N -0.951 5.951 26 Si 0.954 3.046 27 H -0.263 1.263 28 H -0.243 1.243 29 H -0.284 1.284 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.415 0.585 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.153 0.847 37 H 0.082 0.918 38 H 0.145 0.855 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.141 0.859 42 H 0.022 0.978 43 H 0.080 0.920 44 H 0.039 0.961 45 H 0.000 1.000 46 H 0.035 0.965 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.115 6.292 -33.746 36.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.055 4.055 3 H 0.137 0.863 4 C 0.313 3.687 5 O -0.436 6.436 6 N -0.368 5.368 7 C 0.011 3.989 8 C -0.009 4.009 9 H 0.120 0.880 10 C -0.048 4.048 11 O -0.231 6.231 12 C -0.019 4.019 13 C -0.143 4.143 14 C -0.133 4.133 15 C -0.133 4.133 16 C -0.145 4.145 17 C -0.012 4.012 18 O -0.230 6.230 19 N -0.257 5.257 20 C -0.111 4.111 21 C 0.048 3.952 22 C -0.558 4.558 23 H 0.047 0.953 24 C -0.194 4.194 25 N -0.592 5.592 26 Si 0.776 3.224 27 H -0.187 1.187 28 H -0.166 1.166 29 H -0.210 1.210 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.252 0.748 34 H 0.121 0.879 35 H 0.089 0.911 36 H 0.171 0.829 37 H 0.100 0.900 38 H 0.163 0.837 39 H 0.177 0.823 40 H 0.175 0.825 41 H 0.159 0.841 42 H 0.041 0.959 43 H 0.098 0.902 44 H 0.058 0.942 45 H 0.018 0.982 46 H 0.053 0.947 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.004 5.546 -33.489 35.388 hybrid contribution -0.860 0.388 1.052 1.413 sum -10.864 5.934 -32.437 34.719 Atomic orbital electron populations 1.22351 0.93940 1.02876 1.04172 1.21813 0.95424 0.99351 0.88943 0.86307 1.20605 0.79258 0.83938 0.84867 1.90634 1.38673 1.27551 1.86758 1.45684 1.54113 1.32774 1.04252 1.21296 1.00204 0.96305 0.81102 1.23399 0.79491 1.01934 0.96074 0.87996 1.23756 1.02907 0.95500 0.82604 1.86305 1.21357 1.73502 1.41982 1.19235 0.84638 1.03878 0.94107 1.20776 0.95406 1.02322 0.95845 1.21319 0.92730 0.99456 0.99757 1.21313 1.01462 0.99418 0.91094 1.20765 0.91567 1.01438 1.00744 1.19186 0.94388 1.03488 0.84147 1.86320 1.20862 1.84942 1.30849 1.61745 1.59856 1.02623 1.01438 1.22324 0.96511 0.90198 1.02061 1.19978 0.93847 0.94145 0.87209 1.21280 1.26249 1.16380 0.91901 0.95259 1.25957 0.97764 1.00466 0.95247 1.70077 1.45055 1.43934 1.00123 0.85626 0.79644 0.79028 0.78094 1.18740 1.16646 1.20992 0.88608 0.92719 0.91679 0.74828 0.87903 0.91073 0.82943 0.89984 0.83735 0.82305 0.82514 0.84134 0.95930 0.90205 0.94202 0.98245 0.94682 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.50 8.40 71.98 0.60 -3.90 16 2 C 0.06 1.79 2.77 44.17 0.12 1.91 16 3 H 0.12 3.32 8.03 -2.39 -0.02 3.30 16 4 C 0.53 15.76 6.85 87.66 0.60 16.36 16 5 O -0.56 -21.51 13.92 -3.05 -0.04 -21.55 16 6 N -0.71 -14.43 5.36 -463.05 -2.48 -16.91 16 7 C 0.13 2.26 5.39 86.38 0.47 2.72 16 8 C 0.05 0.67 3.10 30.76 0.10 0.76 16 9 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 10 C 0.03 0.35 6.56 72.14 0.47 0.82 16 11 O -0.32 -5.48 10.42 -82.44 -0.86 -6.34 16 12 C 0.03 0.47 6.49 22.56 0.15 0.61 16 13 C -0.12 -1.75 9.96 22.37 0.22 -1.53 16 14 C -0.11 -1.19 10.04 22.26 0.22 -0.97 16 15 C -0.11 -1.26 10.04 22.26 0.22 -1.03 16 16 C -0.13 -1.91 9.96 22.37 0.22 -1.68 16 17 C 0.03 0.60 6.49 22.56 0.15 0.74 16 18 O -0.31 -5.74 9.88 -82.49 -0.82 -6.55 16 19 N -0.53 -23.20 4.53 -906.02 -4.10 -27.31 16 20 C 0.04 1.61 8.42 127.69 1.08 2.68 16 21 C 0.17 8.37 3.23 85.55 0.28 8.64 16 22 C -0.52 -31.00 9.07 25.60 0.23 -30.77 16 23 H 0.03 1.99 7.35 -2.91 -0.02 1.97 16 24 C 0.00 0.14 5.47 84.66 0.46 0.60 16 25 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 26 Si 0.95 43.63 27.47 68.60 1.88 45.52 16 27 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 28 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 29 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 30 H 0.10 1.72 7.56 -2.39 -0.02 1.70 16 31 H 0.05 1.52 6.47 -2.39 -0.02 1.50 16 32 H 0.06 1.80 6.75 -2.38 -0.02 1.78 16 33 H 0.41 6.43 7.81 -92.71 -0.72 5.71 16 34 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 36 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 1.01 8.14 -2.38 -0.02 1.00 16 38 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 39 H 0.16 0.70 8.06 -2.91 -0.02 0.67 16 40 H 0.16 0.85 8.06 -2.91 -0.02 0.82 16 41 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 42 H 0.02 0.89 6.51 -2.39 -0.02 0.88 16 43 H 0.08 3.37 5.37 -2.39 -0.01 3.35 16 44 H 0.04 1.97 6.86 -2.39 -0.02 1.96 16 45 H 0.00 0.00 5.99 -2.38 -0.01 -0.02 16 46 H 0.04 1.59 7.43 -2.39 -0.02 1.58 16 47 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -79.85 375.90 -0.31 -80.16 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.21 Total: 17.49 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 5.59 Total: -4.02 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -6.29 Total: -104.70 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -1.72 Total: -34.44 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.88 Total: 45.52 kcal Total: -79.85 -0.31 -80.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.317 kcal (2) G-P(sol) polarization free energy of solvation -79.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds