Wall clock time and date at job start Tue Mar 31 2020 18:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47142 * 2 1 4 4 C 1.46499 * 119.99744 * 89.99892 * 3 2 1 5 5 C 1.50698 * 109.47597 * 270.00204 * 4 3 2 6 6 C 1.38255 * 119.94095 * 89.99686 * 5 4 3 7 7 C 1.38203 * 120.11089 * 180.31102 * 6 5 4 8 8 C 1.38700 * 120.06575 * 359.52962 * 7 6 5 9 9 C 1.38975 * 119.82373 * 0.35731 * 8 7 6 10 10 C 1.38192 * 119.94532 * 269.97852 * 5 4 3 11 11 O 1.36099 * 120.78758 * 180.02562 * 9 8 7 12 12 C 1.43175 * 116.71669 * 342.81143 * 11 9 8 13 13 C 1.53471 * 108.24790 * 46.16298 * 12 11 9 14 14 O 1.36108 * 119.39683 * 180.02562 * 8 7 6 15 15 C 1.34774 * 120.00180 * 270.00680 * 3 2 1 16 16 O 1.21284 * 119.99587 * 179.97438 * 15 3 2 17 17 C 1.50694 * 120.00006 * 359.97438 * 15 3 2 18 18 N 1.46511 * 109.47039 * 180.02562 * 17 15 3 19 19 C 1.46492 * 120.00418 * 270.00429 * 18 17 15 20 20 C 1.36942 * 119.99466 * 90.00267 * 18 17 15 21 21 H 1.08004 * 119.99987 * 20.27612 * 20 18 17 22 22 C 1.38807 * 119.99892 * 200.27700 * 20 18 17 23 23 N 1.31627 * 119.99840 * 15.01730 * 22 20 18 24 24 Si 1.86801 * 120.00318 * 195.02162 * 22 20 18 25 25 H 1.48500 * 109.47263 * 84.99570 * 24 22 20 26 26 H 1.48494 * 109.47129 * 205.00091 * 24 22 20 27 27 H 1.48497 * 109.46726 * 325.00030 * 24 22 20 28 28 H 1.09003 * 109.47187 * 59.99797 * 1 2 3 29 29 H 1.09001 * 109.46490 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46945 * 299.99381 * 1 2 3 31 31 H 1.08999 * 109.46945 * 240.00619 * 2 1 3 32 32 H 1.08995 * 109.47245 * 120.00508 * 2 1 3 33 33 H 1.08997 * 109.47047 * 150.00226 * 4 3 2 34 34 H 1.09004 * 109.47396 * 30.00392 * 4 3 2 35 35 H 1.07998 * 119.94886 * 0.03947 * 6 5 4 36 36 H 1.07995 * 119.96457 * 179.75526 * 7 6 5 37 37 H 1.07995 * 119.96523 * 359.96756 * 10 5 4 38 38 H 1.09005 * 109.70578 * 165.84855 * 12 11 9 39 39 H 1.08998 * 109.70991 * 286.47223 * 12 11 9 40 40 H 1.08998 * 109.70949 * 59.94899 * 13 12 11 41 41 H 1.08998 * 109.71101 * 180.57469 * 13 12 11 42 42 H 1.08992 * 109.47490 * 300.00273 * 17 15 3 43 43 H 1.08998 * 109.47125 * 60.00547 * 17 15 3 44 44 H 1.08995 * 109.47138 * 95.09482 * 19 18 17 45 45 H 1.08996 * 109.47178 * 215.09843 * 19 18 17 46 46 H 1.09000 * 109.47061 * 335.09823 * 19 18 17 47 47 H 0.97005 * 119.99758 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 1.0067 2.7821 1.7039 6 6 0.0859 2.1292 2.5021 7 6 -1.0700 2.7751 2.8979 8 6 -1.3046 4.0840 2.5032 9 6 -0.3778 4.7411 1.7028 10 6 0.7778 4.0852 1.3048 11 8 -0.5879 6.0255 1.3046 12 6 -1.9262 6.5225 1.4134 13 6 -2.4720 6.1348 2.7944 14 8 -2.4472 4.7072 2.9013 15 6 2.2429 2.0166 -1.1672 16 8 2.6467 3.1603 -1.1670 17 6 1.9922 1.3061 -2.4722 18 7 2.3099 2.2037 -3.5858 19 6 1.2727 3.0754 -4.1429 20 6 3.5765 2.2277 -4.1058 21 1 4.2427 1.3931 -3.9438 22 6 4.0042 3.3246 -4.8410 23 7 3.3261 4.4519 -4.7960 24 14 5.5420 3.2011 -5.8942 25 1 5.1901 2.6298 -7.2190 26 1 6.1262 4.5539 -6.0779 27 1 6.5322 2.3212 -5.2231 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.0644 2.7984 1.1384 34 1 2.5507 1.3451 2.0284 35 1 0.2679 1.1111 2.8132 36 1 -1.7896 2.2615 3.5181 37 1 1.4991 4.5933 0.6820 38 1 -1.9249 7.6076 1.3100 39 1 -2.5473 6.0793 0.6350 40 1 -1.8472 6.5727 3.5727 41 1 -3.4959 6.4936 2.8989 42 1 2.6226 0.4189 -2.5299 43 1 0.9443 1.0117 -2.5301 44 1 1.3348 4.0583 -3.6760 45 1 1.4201 3.1740 -5.2183 46 1 0.2914 2.6424 -3.9489 47 1 3.6249 5.2184 -5.3101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104959397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:01 Heat of formation + Delta-G solvation = -42.064952 kcal Electronic energy + Delta-G solvation = -29945.511146 eV Core-core repulsion = 25902.659250 eV Total energy + Delta-G solvation = -4042.851896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.25855 -39.39591 -37.73261 -37.25845 -35.49858 -34.82550 -32.13159 -31.10909 -30.96687 -29.90506 -28.96860 -27.37490 -25.81091 -25.42724 -24.20453 -23.05699 -22.57240 -21.39237 -20.49119 -18.70174 -18.42676 -17.31704 -17.20564 -16.71469 -16.23225 -15.79091 -15.41228 -15.15396 -14.86147 -14.55984 -14.42329 -14.17414 -14.07289 -13.80103 -13.46633 -13.36288 -13.16251 -13.08912 -12.86222 -12.41224 -12.11537 -11.91162 -11.65153 -11.56815 -11.41335 -11.24826 -11.16599 -11.06825 -10.79668 -10.69527 -10.56643 -10.49152 -10.26837 -9.94391 -9.80680 -8.97663 -8.54750 -8.39725 -8.19972 -7.95851 -6.70341 -5.61899 -3.06383 1.27638 1.37124 2.93817 3.16621 3.41771 3.48710 3.50613 3.52344 3.63345 3.93098 4.10175 4.57733 4.61120 4.63816 4.73561 4.93120 4.97426 5.07676 5.16249 5.28649 5.29563 5.38226 5.42118 5.52986 5.54327 5.54888 5.64360 5.76234 5.88436 5.93032 5.99278 6.09588 6.14056 6.22938 6.26187 6.31946 6.41693 6.58261 6.73713 6.78647 6.87953 7.05875 7.42326 7.43964 7.81519 7.91352 8.05380 8.44971 9.16669 9.30578 9.92679 10.39683 11.42638 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013914 B = 0.003491 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.904854 B = 8019.174344 C = 9242.229568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.112 3.888 3 N -0.625 5.625 4 C 0.155 3.845 5 C -0.090 4.090 6 C -0.105 4.105 7 C -0.120 4.120 8 C 0.044 3.956 9 C 0.049 3.951 10 C -0.085 4.085 11 O -0.304 6.304 12 C 0.020 3.980 13 C 0.022 3.978 14 O -0.311 6.311 15 C 0.474 3.526 16 O -0.502 6.502 17 C 0.135 3.865 18 N -0.573 5.573 19 C 0.165 3.835 20 C -0.258 4.258 21 H 0.070 0.930 22 C 0.008 3.992 23 N -0.895 5.895 24 Si 0.905 3.095 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.280 1.280 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.143 0.857 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.046 0.954 46 H -0.005 1.005 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.101 -4.524 17.414 21.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.012 4.012 3 N -0.364 5.364 4 C 0.032 3.968 5 C -0.092 4.092 6 C -0.124 4.124 7 C -0.139 4.139 8 C -0.001 4.001 9 C 0.004 3.996 10 C -0.104 4.104 11 O -0.218 6.218 12 C -0.056 4.056 13 C -0.054 4.054 14 O -0.226 6.226 15 C 0.260 3.740 16 O -0.373 6.373 17 C 0.002 3.998 18 N -0.293 5.293 19 C 0.020 3.980 20 C -0.387 4.387 21 H 0.087 0.913 22 C -0.191 4.191 23 N -0.538 5.538 24 Si 0.735 3.265 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.206 1.206 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.161 0.839 38 H 0.138 0.862 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.137 0.863 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.053 0.947 45 H 0.065 0.935 46 H 0.014 0.986 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.851 -3.630 17.204 21.204 hybrid contribution 0.530 0.380 -0.340 0.735 sum -11.321 -3.250 16.864 20.570 Atomic orbital electron populations 1.22364 0.96588 1.01574 1.03083 1.21432 0.94057 0.83114 1.02590 1.48702 1.68546 1.13789 1.05314 1.20193 0.93761 0.96471 0.86385 1.20092 0.98084 0.93335 0.97675 1.20735 0.93211 0.99590 0.98868 1.20302 0.98585 0.92334 1.02680 1.18876 0.88211 0.94228 0.98777 1.18929 0.96950 0.85554 0.98147 1.20590 0.96372 0.93991 0.99468 1.86373 1.28808 1.24911 1.81758 1.23610 0.83136 1.01584 0.97250 1.23597 1.04155 0.79996 0.97643 1.86270 1.34020 1.20331 1.81965 1.23655 0.76352 0.88272 0.85739 1.90681 1.42484 1.17710 1.86428 1.21051 0.99298 0.94449 0.84960 1.43919 1.08883 1.45559 1.30895 1.20828 0.85698 0.93334 0.98131 1.19147 0.90963 1.00455 1.28171 0.91270 1.25009 0.98023 0.94696 1.01417 1.70134 1.40451 1.00959 1.42304 0.86280 0.82918 0.76742 0.80588 1.21445 1.21775 1.20590 0.92356 0.92200 0.91926 0.90292 0.91246 0.89339 0.90398 0.85289 0.85173 0.83945 0.86186 0.90524 0.90672 0.86304 0.91099 0.91687 0.94743 0.93521 0.98642 0.93841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 10.24 37.16 0.38 -1.54 16 2 C 0.11 1.28 5.98 -4.04 -0.02 1.25 16 3 N -0.63 -9.75 2.46 -175.06 -0.43 -10.18 16 4 C 0.16 2.20 5.57 -5.20 -0.03 2.17 16 5 C -0.09 -1.29 5.39 -104.63 -0.56 -1.85 16 6 C -0.11 -1.24 7.53 -39.59 -0.30 -1.54 16 7 C -0.12 -1.47 9.96 -39.42 -0.39 -1.86 16 8 C 0.04 0.62 6.49 -39.14 -0.25 0.36 16 9 C 0.05 0.78 6.49 -39.13 -0.25 0.53 16 10 C -0.09 -1.44 9.61 -39.42 -0.38 -1.82 16 11 O -0.30 -4.73 10.42 -32.84 -0.34 -5.07 16 12 C 0.02 0.21 7.26 37.40 0.27 0.48 16 13 C 0.02 0.20 7.26 37.40 0.27 0.47 16 14 O -0.31 -3.93 10.42 -32.87 -0.34 -4.27 16 15 C 0.47 9.94 7.74 -10.99 -0.09 9.86 16 16 O -0.50 -13.12 15.53 5.55 0.09 -13.04 16 17 C 0.13 2.81 4.74 -5.19 -0.02 2.79 16 18 N -0.57 -15.08 2.42 -182.51 -0.44 -15.52 16 19 C 0.16 4.32 9.02 59.84 0.54 4.86 16 20 C -0.26 -7.37 9.68 -15.06 -0.15 -7.52 16 21 H 0.07 1.91 7.86 -52.48 -0.41 1.50 16 22 C 0.01 0.23 5.06 -17.43 -0.09 0.14 16 23 N -0.89 -27.55 10.66 55.49 0.59 -26.96 16 24 Si 0.90 22.63 29.58 -169.99 -5.03 17.60 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 H 0.06 0.74 7.22 -51.93 -0.38 0.37 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.68 5.26 -51.93 -0.27 0.41 16 31 H 0.08 0.88 6.44 -51.93 -0.33 0.55 16 32 H 0.07 0.62 7.89 -51.93 -0.41 0.21 16 33 H 0.09 1.46 7.36 -51.93 -0.38 1.08 16 34 H 0.08 0.84 7.84 -51.93 -0.41 0.43 16 35 H 0.13 1.16 7.73 -52.49 -0.41 0.75 16 36 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.14 2.81 7.57 -52.49 -0.40 2.42 16 38 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.12 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.07 1.35 7.29 -51.93 -0.38 0.97 16 43 H 0.07 1.19 6.90 -51.93 -0.36 0.84 16 44 H 0.03 1.01 7.40 -51.93 -0.38 0.63 16 45 H 0.05 1.28 7.21 -51.93 -0.37 0.90 16 46 H 0.00 -0.11 7.84 -51.93 -0.41 -0.52 16 47 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 379.72 15.07 5.72 5.72 Total: -1.00 -36.79 379.72 -8.23 -45.02 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.97 Total: -0.09 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -1.08 Total: 6.79 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.28 Total: -52.66 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.60 Total: -22.38 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.03 Total: 17.60 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.79 -8.23 -45.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104959397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.957 kcal (2) G-P(sol) polarization free energy of solvation -36.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds