Wall clock time and date at job start Tue Mar 31 2020 18:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47142 * 2 1 4 4 C 1.46499 * 119.99744 * 89.99892 * 3 2 1 5 5 C 1.50698 * 109.47597 * 270.00204 * 4 3 2 6 6 C 1.38255 * 119.94095 * 89.99686 * 5 4 3 7 7 C 1.38203 * 120.11089 * 180.31102 * 6 5 4 8 8 C 1.38700 * 120.06575 * 359.52962 * 7 6 5 9 9 C 1.38975 * 119.82373 * 0.35731 * 8 7 6 10 10 C 1.38192 * 119.94532 * 269.97852 * 5 4 3 11 11 O 1.36099 * 120.78758 * 180.02562 * 9 8 7 12 12 C 1.43175 * 116.71669 * 342.81143 * 11 9 8 13 13 C 1.53471 * 108.24790 * 46.16298 * 12 11 9 14 14 O 1.36108 * 119.39683 * 180.02562 * 8 7 6 15 15 C 1.34774 * 120.00180 * 270.00680 * 3 2 1 16 16 O 1.21284 * 119.99587 * 179.97438 * 15 3 2 17 17 C 1.50694 * 120.00006 * 359.97438 * 15 3 2 18 18 N 1.46511 * 109.47039 * 180.02562 * 17 15 3 19 19 C 1.46492 * 120.00418 * 270.00429 * 18 17 15 20 20 C 1.36942 * 119.99466 * 90.00267 * 18 17 15 21 21 H 1.08004 * 119.99987 * 20.27612 * 20 18 17 22 22 C 1.38807 * 119.99892 * 200.27700 * 20 18 17 23 23 N 1.31627 * 119.99840 * 15.01730 * 22 20 18 24 24 Si 1.86801 * 120.00318 * 195.02162 * 22 20 18 25 25 H 1.48500 * 109.47263 * 84.99570 * 24 22 20 26 26 H 1.48494 * 109.47129 * 205.00091 * 24 22 20 27 27 H 1.48497 * 109.46726 * 325.00030 * 24 22 20 28 28 H 1.09003 * 109.47187 * 59.99797 * 1 2 3 29 29 H 1.09001 * 109.46490 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46945 * 299.99381 * 1 2 3 31 31 H 1.08999 * 109.46945 * 240.00619 * 2 1 3 32 32 H 1.08995 * 109.47245 * 120.00508 * 2 1 3 33 33 H 1.08997 * 109.47047 * 150.00226 * 4 3 2 34 34 H 1.09004 * 109.47396 * 30.00392 * 4 3 2 35 35 H 1.07998 * 119.94886 * 0.03947 * 6 5 4 36 36 H 1.07995 * 119.96457 * 179.75526 * 7 6 5 37 37 H 1.07995 * 119.96523 * 359.96756 * 10 5 4 38 38 H 1.09005 * 109.70578 * 165.84855 * 12 11 9 39 39 H 1.08998 * 109.70991 * 286.47223 * 12 11 9 40 40 H 1.08998 * 109.70949 * 59.94899 * 13 12 11 41 41 H 1.08998 * 109.71101 * 180.57469 * 13 12 11 42 42 H 1.08992 * 109.47490 * 300.00273 * 17 15 3 43 43 H 1.08998 * 109.47125 * 60.00547 * 17 15 3 44 44 H 1.08995 * 109.47138 * 95.09482 * 19 18 17 45 45 H 1.08996 * 109.47178 * 215.09843 * 19 18 17 46 46 H 1.09000 * 109.47061 * 335.09823 * 19 18 17 47 47 H 0.97005 * 119.99758 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 1.0067 2.7821 1.7039 6 6 0.0859 2.1292 2.5021 7 6 -1.0700 2.7751 2.8979 8 6 -1.3046 4.0840 2.5032 9 6 -0.3778 4.7411 1.7028 10 6 0.7778 4.0852 1.3048 11 8 -0.5879 6.0255 1.3046 12 6 -1.9262 6.5225 1.4134 13 6 -2.4720 6.1348 2.7944 14 8 -2.4472 4.7072 2.9013 15 6 2.2429 2.0166 -1.1672 16 8 2.6467 3.1603 -1.1670 17 6 1.9922 1.3061 -2.4722 18 7 2.3099 2.2037 -3.5858 19 6 1.2727 3.0754 -4.1429 20 6 3.5765 2.2277 -4.1058 21 1 4.2427 1.3931 -3.9438 22 6 4.0042 3.3246 -4.8410 23 7 3.3261 4.4519 -4.7960 24 14 5.5420 3.2011 -5.8942 25 1 5.1901 2.6298 -7.2190 26 1 6.1262 4.5539 -6.0779 27 1 6.5322 2.3212 -5.2231 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.0644 2.7984 1.1384 34 1 2.5507 1.3451 2.0284 35 1 0.2679 1.1111 2.8132 36 1 -1.7896 2.2615 3.5181 37 1 1.4991 4.5933 0.6820 38 1 -1.9249 7.6076 1.3100 39 1 -2.5473 6.0793 0.6350 40 1 -1.8472 6.5727 3.5727 41 1 -3.4959 6.4936 2.8989 42 1 2.6226 0.4189 -2.5299 43 1 0.9443 1.0117 -2.5301 44 1 1.3348 4.0583 -3.6760 45 1 1.4201 3.1740 -5.2183 46 1 0.2914 2.6424 -3.9489 47 1 3.6249 5.2184 -5.3101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104959397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:00 Heat of formation + Delta-G solvation = -66.739166 kcal Electronic energy + Delta-G solvation = -29946.581100 eV Core-core repulsion = 25902.659250 eV Total energy + Delta-G solvation = -4043.921850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.26301 -40.81813 -38.93915 -38.27217 -37.15276 -36.52855 -33.48674 -32.84203 -31.97731 -30.96022 -30.12803 -28.97445 -27.91330 -26.69629 -25.28661 -24.19420 -23.72865 -23.10869 -21.56054 -19.99824 -19.57908 -18.77754 -18.31385 -18.28306 -17.65798 -17.22985 -16.58547 -16.40053 -16.24314 -15.98737 -15.49127 -15.40242 -15.24951 -15.14038 -14.87739 -14.74285 -14.67383 -14.36778 -14.05767 -13.74722 -13.61328 -13.17933 -13.06791 -12.83131 -12.80312 -12.56765 -12.50491 -12.49245 -12.31130 -12.10333 -12.04853 -12.01827 -11.86948 -11.60994 -11.47502 -10.82003 -10.46359 -9.64621 -9.50945 -9.05411 -8.80236 -7.80771 -5.28583 0.19905 0.29367 1.44366 1.47399 1.55452 1.95640 2.03933 2.25217 2.29447 2.52058 2.79486 3.25570 3.34353 3.63247 3.68843 3.84766 3.87769 3.91111 4.05293 4.19593 4.26851 4.29714 4.35303 4.47181 4.48155 4.52455 4.58458 4.64076 4.66753 4.74086 4.80223 4.81695 4.90749 5.03190 5.11894 5.14591 5.16415 5.24823 5.52242 5.54829 5.59561 5.68114 5.69809 5.85745 5.90374 6.27095 6.39112 6.65540 7.11900 7.58992 7.85957 8.26646 9.23375 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013914 B = 0.003491 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.904854 B = 8019.174344 C = 9242.229568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.102 3.898 3 N -0.613 5.613 4 C 0.156 3.844 5 C -0.095 4.095 6 C -0.087 4.087 7 C -0.114 4.114 8 C 0.040 3.960 9 C 0.027 3.973 10 C -0.118 4.118 11 O -0.339 6.339 12 C 0.009 3.991 13 C 0.022 3.978 14 O -0.317 6.317 15 C 0.472 3.528 16 O -0.569 6.569 17 C 0.132 3.868 18 N -0.593 5.593 19 C 0.183 3.817 20 C -0.263 4.263 21 H 0.079 0.921 22 C -0.056 4.056 23 N -0.936 5.936 24 Si 0.973 3.027 25 H -0.277 1.277 26 H -0.301 1.301 27 H -0.267 1.267 28 H 0.031 0.969 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.052 0.948 34 H 0.128 0.872 35 H 0.173 0.827 36 H 0.163 0.837 37 H 0.093 0.907 38 H 0.148 0.852 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.159 0.841 42 H 0.095 0.905 43 H 0.093 0.907 44 H -0.012 1.012 45 H 0.025 0.975 46 H 0.030 0.970 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.581 -8.228 19.918 25.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.020 4.020 3 N -0.348 5.348 4 C 0.033 3.967 5 C -0.096 4.096 6 C -0.105 4.105 7 C -0.132 4.132 8 C -0.005 4.005 9 C -0.018 4.018 10 C -0.138 4.138 11 O -0.255 6.255 12 C -0.066 4.066 13 C -0.053 4.053 14 O -0.232 6.232 15 C 0.259 3.741 16 O -0.446 6.446 17 C 0.002 3.998 18 N -0.313 5.313 19 C 0.038 3.962 20 C -0.393 4.393 21 H 0.096 0.904 22 C -0.251 4.251 23 N -0.583 5.583 24 Si 0.801 3.199 25 H -0.203 1.203 26 H -0.228 1.228 27 H -0.192 1.192 28 H 0.050 0.950 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.070 0.930 34 H 0.146 0.854 35 H 0.191 0.809 36 H 0.181 0.819 37 H 0.111 0.889 38 H 0.165 0.835 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.177 0.823 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.007 0.993 45 H 0.043 0.957 46 H 0.048 0.952 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -13.365 -7.428 19.773 24.995 hybrid contribution 0.859 1.475 -0.958 1.957 sum -12.506 -5.953 18.815 23.363 Atomic orbital electron populations 1.22322 0.95663 1.03243 1.01873 1.21861 0.94752 0.80360 1.05023 1.48485 1.66759 1.15269 1.04283 1.20323 0.92946 0.96896 0.86523 1.20106 0.98777 0.92277 0.98458 1.21098 0.91744 1.00940 0.96695 1.20773 0.99110 0.91433 1.01934 1.19104 0.88072 0.95063 0.98293 1.19077 0.97396 0.85989 0.99318 1.20446 0.96627 0.95790 1.00925 1.86313 1.31719 1.25199 1.82267 1.23972 0.81150 1.03093 0.98338 1.23892 1.06532 0.78374 0.96495 1.86250 1.33225 1.22079 1.81649 1.23295 0.76002 0.87337 0.87511 1.90684 1.45838 1.20475 1.87574 1.21245 1.01412 0.93637 0.83540 1.44074 1.08162 1.45835 1.33277 1.20476 0.87591 0.91812 0.96318 1.19569 0.91786 1.00405 1.27558 0.90366 1.25888 1.01501 0.94447 1.03271 1.70361 1.42538 1.01665 1.43693 0.85199 0.79322 0.76251 0.79137 1.20307 1.22781 1.19206 0.94991 0.89023 0.91754 0.89764 0.87043 0.92978 0.85412 0.80921 0.81903 0.88910 0.83475 0.91001 0.90078 0.82329 0.88724 0.88914 0.99344 0.95650 0.95170 0.94698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 10.24 71.98 0.74 -2.24 16 2 C 0.10 1.88 5.98 86.38 0.52 2.40 16 3 N -0.61 -18.20 2.46 -826.17 -2.03 -20.23 16 4 C 0.16 4.27 5.57 85.63 0.48 4.75 16 5 C -0.09 -2.65 5.39 -19.87 -0.11 -2.76 16 6 C -0.09 -1.72 7.53 22.27 0.17 -1.55 16 7 C -0.11 -2.41 9.96 22.37 0.22 -2.19 16 8 C 0.04 1.08 6.49 22.56 0.15 1.23 16 9 C 0.03 0.90 6.49 22.56 0.15 1.05 16 10 C -0.12 -4.34 9.61 22.37 0.22 -4.12 16 11 O -0.34 -11.42 10.42 -82.45 -0.86 -12.27 16 12 C 0.01 0.20 7.26 72.14 0.52 0.72 16 13 C 0.02 0.37 7.26 72.14 0.52 0.89 16 14 O -0.32 -7.43 10.42 -82.55 -0.86 -8.29 16 15 C 0.47 20.16 7.74 87.66 0.68 20.84 16 16 O -0.57 -31.86 15.53 -3.04 -0.05 -31.90 16 17 C 0.13 5.43 4.74 85.63 0.41 5.84 16 18 N -0.59 -31.93 2.42 -731.34 -1.77 -33.70 16 19 C 0.18 10.06 9.02 127.77 1.15 11.21 16 20 C -0.26 -15.34 9.68 84.03 0.81 -14.53 16 21 H 0.08 4.31 7.86 -2.91 -0.02 4.28 16 22 C -0.06 -3.39 5.06 84.86 0.43 -2.96 16 23 N -0.94 -60.95 10.66 21.65 0.23 -60.72 16 24 Si 0.97 47.84 29.58 68.60 2.03 49.87 16 25 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 26 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 27 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 28 H 0.03 0.72 7.22 -2.39 -0.02 0.70 16 29 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.09 5.26 -2.39 -0.01 1.08 16 31 H 0.08 1.52 6.44 -2.39 -0.02 1.51 16 32 H 0.11 1.24 7.89 -2.39 -0.02 1.23 16 33 H 0.05 1.82 7.36 -2.39 -0.02 1.81 16 34 H 0.13 2.21 7.84 -2.38 -0.02 2.19 16 35 H 0.17 1.93 7.73 -2.91 -0.02 1.91 16 36 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 37 H 0.09 4.25 7.57 -2.91 -0.02 4.23 16 38 H 0.15 2.18 8.14 -2.38 -0.02 2.16 16 39 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.16 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.09 3.42 7.29 -2.39 -0.02 3.40 16 43 H 0.09 3.26 6.90 -2.39 -0.02 3.24 16 44 H -0.01 -0.76 7.40 -2.39 -0.02 -0.77 16 45 H 0.02 1.45 7.21 -2.39 -0.02 1.43 16 46 H 0.03 1.39 7.84 -2.39 -0.02 1.37 16 47 H 0.24 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -89.81 379.72 4.72 -85.09 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.97 Total: 13.58 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 7.05 Total: 18.58 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -3.56 Total: -114.65 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -1.77 Total: -52.47 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.87 kcal Total: -89.81 4.72 -85.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104959397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.347 kcal (2) G-P(sol) polarization free energy of solvation -89.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds