Wall clock time and date at job start Tue Mar 31 2020 18:00:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 109.47305 * 2 1
4 4 C 1.52993 * 109.47275 * 120.00423 * 2 1 3
5 5 O 1.42903 * 109.47133 * 54.99736 * 4 2 1
6 6 C 1.42906 * 113.99959 * 180.02562 * 5 4 2
7 7 H 1.09004 * 110.43212 * 328.90410 * 6 5 4
8 8 C 1.54811 * 110.48603 * 206.22034 * 6 5 4
9 9 C 1.54997 * 102.08899 * 220.44002 * 8 6 5
10 10 O 1.44382 * 103.49183 * 37.02498 * 9 8 6
11 11 C 1.43747 * 106.97323 * 319.93922 * 10 9 8
12 12 N 1.46506 * 109.46935 * 240.00403 * 2 1 3
13 13 C 1.34772 * 120.00149 * 84.99972 * 12 2 1
14 14 O 1.21586 * 120.00137 * 359.97438 * 13 12 2
15 15 N 1.34776 * 120.00002 * 180.02562 * 13 12 2
16 16 C 1.39246 * 120.00162 * 175.71136 * 15 13 12
17 17 C 1.39481 * 119.83362 * 215.02326 * 16 15 13
18 18 C 1.36375 * 120.16744 * 179.76196 * 17 16 15
19 19 C 1.40867 * 119.82699 * 0.48658 * 18 17 16
20 20 C 1.41155 * 120.15997 * 179.78792 * 19 18 17
21 21 H 1.08001 * 119.99832 * 214.75897 * 20 19 18
22 22 C 1.39896 * 120.00522 * 34.76534 * 20 19 18
23 23 N 1.30881 * 119.99622 * 355.55802 * 22 20 19
24 24 Si 1.86799 * 120.00225 * 175.55594 * 22 20 19
25 25 H 1.48496 * 109.47197 * 359.97438 * 24 22 20
26 26 H 1.48503 * 109.46553 * 119.99962 * 24 22 20
27 27 H 1.48495 * 109.47239 * 239.99636 * 24 22 20
28 28 C 1.40866 * 119.67248 * 359.75952 * 19 18 17
29 29 C 1.36368 * 119.83113 * 0.02562 * 28 19 18
30 30 H 1.09008 * 109.46895 * 299.99998 * 1 2 3
31 31 H 1.09000 * 109.47226 * 59.99152 * 1 2 3
32 32 H 1.08999 * 109.47305 * 180.02562 * 1 2 3
33 33 H 1.09001 * 109.47286 * 294.99777 * 4 2 1
34 34 H 1.09002 * 109.47017 * 174.99608 * 4 2 1
35 35 H 1.08994 * 110.90611 * 338.63663 * 8 6 5
36 36 H 1.08997 * 110.90623 * 102.24168 * 8 6 5
37 37 H 1.09000 * 110.61818 * 278.51873 * 9 8 6
38 38 H 1.09001 * 110.75184 * 155.58833 * 9 8 6
39 39 H 1.09002 * 109.87807 * 267.08899 * 11 10 9
40 40 H 1.08994 * 109.88049 * 145.93901 * 11 10 9
41 41 H 0.97003 * 119.99736 * 265.00167 * 12 2 1
42 42 H 0.97001 * 120.00082 * 355.71186 * 15 13 12
43 43 H 1.08002 * 119.91282 * 359.97438 * 17 16 15
44 44 H 1.08003 * 120.08516 * 180.27346 * 18 17 16
45 45 H 0.97001 * 120.00153 * 180.02562 * 23 22 20
46 46 H 1.08002 * 120.08444 * 180.02562 * 28 19 18
47 47 H 1.08006 * 119.91880 * 179.97438 * 29 28 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7213 1.2491
5 8 1.4702 -2.0304 1.3093
6 6 1.8836 -2.7927 2.4452
7 1 2.8957 -2.5163 2.7410
8 6 1.7999 -4.3082 2.1403
9 6 1.2351 -4.8755 3.4675
10 8 0.2998 -3.8625 3.8959
11 6 0.9043 -2.5884 3.6172
12 7 2.0183 -0.6906 -1.1963
13 6 2.1470 -0.0182 -2.3572
14 8 1.8574 1.1614 -2.4119
15 7 2.5957 -0.6536 -3.4578
16 6 2.6443 0.0165 -4.6775
17 6 2.3832 -0.6754 -5.8601
18 6 2.4241 -0.0248 -7.0580
19 6 2.7411 1.3471 -7.0997
20 6 2.7898 2.0264 -8.3361
21 1 3.5103 2.8160 -8.4904
22 6 1.9048 1.6770 -9.3617
23 7 1.0909 0.6639 -9.2067
24 14 1.8846 2.6565 -10.9521
25 1 2.8929 3.7441 -10.8765
26 1 2.2082 1.7591 -12.0902
27 1 0.5364 3.2453 -11.1538
28 6 3.0086 2.0378 -5.9015
29 6 2.9595 1.3748 -4.7109
30 1 -0.3633 0.5139 0.8901
31 1 -0.3634 0.5140 -0.8899
32 1 -0.3634 -1.0276 0.0005
33 1 1.7517 -0.1584 2.1369
34 1 3.1263 -0.7996 1.2054
35 1 1.1172 -4.5013 1.3129
36 1 2.7880 -4.7180 1.9313
37 1 2.0310 -4.9984 4.2020
38 1 0.7232 -5.8225 3.2959
39 1 1.4453 -2.2350 4.4950
40 1 0.1365 -1.8672 3.3373
41 1 2.2489 -1.6318 -1.1528
42 1 2.8849 -1.5777 -3.4003
43 1 2.1447 -1.7282 -5.8268
44 1 2.2174 -0.5608 -7.9726
45 1 0.4774 0.4213 -9.9179
46 1 3.2519 3.0898 -5.9257
47 1 3.1648 1.9028 -3.7914
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000122690281.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:00:18
Heat of formation + Delta-G solvation = -96.409009 kcal
Electronic energy + Delta-G solvation = -27950.709633 eV
Core-core repulsion = 23905.501202 eV
Total energy + Delta-G solvation = -4045.208431 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 334.173 amu
Computer time = 2.02 seconds
Orbital eigenvalues (eV)
-40.24576 -39.83934 -38.07688 -37.25605 -35.22051 -34.23148 -32.92663 -31.83354
-30.66114 -29.48785 -29.11381 -28.51681 -26.69274 -24.86882 -23.28537 -22.13381
-21.78608 -21.14877 -20.55629 -20.04601 -18.06304 -17.71729 -17.20986 -17.04501
-16.65286 -16.13975 -15.54715 -15.35860 -15.11116 -14.90496 -14.54799 -14.44829
-13.89539 -13.71422 -13.41719 -13.08818 -12.95108 -12.65701 -12.59744 -12.51810
-12.19645 -12.06377 -11.89809 -11.64363 -11.61113 -11.30929 -11.17906 -11.13273
-11.05370 -10.90997 -10.68675 -10.35034 -10.02621 -9.86860 -9.48509 -9.40741
-9.20230 -8.88480 -8.81600 -7.48112 -6.77425 -6.55912 -4.28035 2.71238
2.99451 3.11457 3.13066 3.14420 3.18745 3.22848 3.46947 3.75832
4.00809 4.02655 4.36930 4.46050 4.55610 4.63983 4.67419 4.76178
4.81799 4.88938 4.98801 5.07274 5.21067 5.24428 5.31659 5.39938
5.46660 5.54486 5.68643 5.72834 5.97485 6.25061 6.31830 6.33380
6.49841 6.65302 6.76486 6.82839 6.90706 7.10877 7.21966 7.33109
7.47904 7.71233 7.92645 8.03745 8.15804 8.36928 8.53922 8.70069
8.98965 8.99313 9.15961 10.35388
Molecular weight = 334.17amu
Principal moments of inertia in cm(-1)
A = 0.031179 B = 0.001845 C = 0.001805
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 897.822465 B =15169.245727 C =15506.202129
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.168 3.832
3 H 0.100 0.900
4 C 0.051 3.949
5 O -0.366 6.366
6 C 0.056 3.944
7 H 0.077 0.923
8 C -0.153 4.153
9 C 0.046 3.954
10 O -0.374 6.374
11 C 0.024 3.976
12 N -0.745 5.745
13 C 0.695 3.305
14 O -0.579 6.579
15 N -0.668 5.668
16 C 0.026 3.974
17 C -0.124 4.124
18 C -0.140 4.140
19 C 0.096 3.904
20 C -0.462 4.462
21 H 0.075 0.925
22 C 0.069 3.931
23 N -0.814 5.814
24 Si 0.914 3.086
25 H -0.263 1.263
26 H -0.275 1.275
27 H -0.275 1.275
28 C -0.203 4.203
29 C -0.087 4.087
30 H 0.059 0.941
31 H 0.064 0.936
32 H 0.064 0.936
33 H 0.065 0.935
34 H 0.058 0.942
35 H 0.093 0.907
36 H 0.087 0.913
37 H 0.062 0.938
38 H 0.097 0.903
39 H 0.062 0.938
40 H 0.094 0.906
41 H 0.395 0.605
42 H 0.391 0.609
43 H 0.090 0.910
44 H 0.132 0.868
45 H 0.276 0.724
46 H 0.095 0.905
47 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.329 -10.357 22.653 25.017
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.063 3.937
3 H 0.118 0.882
4 C -0.026 4.026
5 O -0.285 6.285
6 C -0.003 4.003
7 H 0.095 0.905
8 C -0.190 4.190
9 C -0.030 4.030
10 O -0.292 6.292
11 C -0.054 4.054
12 N -0.402 5.402
13 C 0.396 3.604
14 O -0.456 6.456
15 N -0.314 5.314
16 C -0.067 4.067
17 C -0.145 4.145
18 C -0.160 4.160
19 C 0.094 3.906
20 C -0.493 4.493
21 H 0.093 0.907
22 C -0.146 4.146
23 N -0.442 5.442
24 Si 0.740 3.260
25 H -0.186 1.186
26 H -0.201 1.201
27 H -0.201 1.201
28 C -0.224 4.224
29 C -0.108 4.108
30 H 0.078 0.922
31 H 0.083 0.917
32 H 0.083 0.917
33 H 0.083 0.917
34 H 0.076 0.924
35 H 0.111 0.889
36 H 0.106 0.894
37 H 0.080 0.920
38 H 0.115 0.885
39 H 0.081 0.919
40 H 0.112 0.888
41 H 0.229 0.771
42 H 0.224 0.776
43 H 0.108 0.892
44 H 0.149 0.851
45 H 0.087 0.913
46 H 0.113 0.887
47 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges 1.529 -9.474 22.445 24.411
hybrid contribution 0.396 -0.373 -0.512 0.748
sum 1.925 -9.848 21.932 24.119
Atomic orbital electron populations
1.22111 0.94862 1.02693 1.02270 1.20768 0.94903 0.96321 0.81728
0.88214 1.22980 0.97459 0.84013 0.98173 1.88017 1.69997 1.26355
1.44138 1.23529 0.97474 0.92398 0.86878 0.90528 1.23222 1.03207
0.92995 0.99618 1.23554 0.92774 0.92861 0.93858 1.88919 1.41358
1.14822 1.84146 1.23762 0.97411 0.87474 0.96708 1.45126 1.72610
1.13547 1.08916 1.16034 0.78601 0.85427 0.80329 1.90901 1.56719
1.14125 1.83895 1.42121 1.66909 1.15235 1.07091 1.17080 1.14016
0.93133 0.82477 1.20298 1.03757 0.97974 0.92435 1.21175 1.03888
0.94674 0.96285 1.17721 0.89255 0.91344 0.92290 1.19508 1.16275
1.16886 0.96609 0.90655 1.25867 0.94413 0.94647 0.99651 1.69777
1.17766 1.23503 1.33121 0.86163 0.78891 0.80165 0.80823 1.18632
1.20072 1.20057 1.20802 1.11168 0.98221 0.92169 1.20422 0.99748
0.93054 0.97536 0.92238 0.91724 0.91722 0.91705 0.92354 0.88878
0.89434 0.92008 0.88452 0.91944 0.88765 0.77106 0.77592 0.89195
0.85063 0.91304 0.88679 0.87353
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.87 9.29 37.16 0.35 -1.53 16
2 C 0.17 1.87 2.98 -67.93 -0.20 1.67 16
3 H 0.10 1.23 7.58 -51.93 -0.39 0.84 16
4 C 0.05 0.39 5.54 37.15 0.21 0.60 16
5 O -0.37 -3.08 8.81 -35.23 -0.31 -3.39 16
6 C 0.06 0.37 3.51 -25.21 -0.09 0.28 16
7 H 0.08 0.38 7.86 -51.93 -0.41 -0.02 16
8 C -0.15 -0.91 6.90 -24.72 -0.17 -1.08 16
9 C 0.05 0.28 7.72 38.21 0.29 0.57 16
10 O -0.37 -3.43 11.52 -35.23 -0.41 -3.83 16
11 C 0.02 0.17 7.52 37.73 0.28 0.45 16
12 N -0.74 -9.51 5.06 -58.68 -0.30 -9.81 16
13 C 0.70 12.41 8.36 -86.92 -0.73 11.69 16
14 O -0.58 -12.77 13.42 5.29 0.07 -12.70 16
15 N -0.67 -11.98 5.31 -14.10 -0.07 -12.05 16
16 C 0.03 0.58 6.31 -83.57 -0.53 0.05 16
17 C -0.12 -2.88 9.90 -39.79 -0.39 -3.27 16
18 C -0.14 -3.66 8.61 -39.26 -0.34 -4.00 16
19 C 0.10 2.63 5.55 -106.80 -0.59 2.04 16
20 C -0.46 -12.53 9.02 -37.86 -0.34 -12.87 16
21 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16
22 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16
23 N -0.81 -21.57 10.59 55.55 0.59 -20.98 16
24 Si 0.91 19.36 29.56 -169.99 -5.03 14.33 16
25 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16
26 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16
27 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16
28 C -0.20 -5.26 9.74 -39.26 -0.38 -5.64 16
29 C -0.09 -2.14 8.61 -39.79 -0.34 -2.48 16
30 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16
31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16
32 H 0.06 0.76 7.56 -51.93 -0.39 0.37 16
33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
34 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16
35 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16
36 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16
37 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16
38 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16
39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
40 H 0.09 0.72 7.97 -51.93 -0.41 0.31 16
41 H 0.40 4.13 8.40 -40.82 -0.34 3.79 16
42 H 0.39 5.52 8.83 -40.82 -0.36 5.15 16
43 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16
44 H 0.13 3.54 6.13 -52.48 -0.32 3.22 16
45 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16
46 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16
47 H 0.11 2.63 6.22 -52.48 -0.33 2.30 16
LS Contribution 386.57 15.07 5.83 5.83
Total: -1.00 -32.50 386.57 -9.85 -42.35
By element:
Atomic # 1 Polarization: 19.25 SS G_CDS: -7.15 Total: 12.10 kcal
Atomic # 6 Polarization: -8.77 SS G_CDS: -3.07 Total: -11.84 kcal
Atomic # 7 Polarization: -43.06 SS G_CDS: 0.22 Total: -42.85 kcal
Atomic # 8 Polarization: -19.27 SS G_CDS: -0.65 Total: -19.92 kcal
Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal
Total LS contribution 5.83 Total: 5.83 kcal
Total: -32.50 -9.85 -42.35 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000122690281.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -54.054 kcal
(2) G-P(sol) polarization free energy of solvation -32.504 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.558 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.851 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.355 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.409 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.02 seconds