Wall clock time and date at job start Tue Mar 31 2020 18:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47305 * 2 1 4 4 C 1.52993 * 109.47275 * 120.00423 * 2 1 3 5 5 O 1.42903 * 109.47133 * 54.99736 * 4 2 1 6 6 C 1.42906 * 113.99959 * 180.02562 * 5 4 2 7 7 H 1.09004 * 110.43212 * 328.90410 * 6 5 4 8 8 C 1.54811 * 110.48603 * 206.22034 * 6 5 4 9 9 C 1.54997 * 102.08899 * 220.44002 * 8 6 5 10 10 O 1.44382 * 103.49183 * 37.02498 * 9 8 6 11 11 C 1.43747 * 106.97323 * 319.93922 * 10 9 8 12 12 N 1.46506 * 109.46935 * 240.00403 * 2 1 3 13 13 C 1.34772 * 120.00149 * 84.99972 * 12 2 1 14 14 O 1.21586 * 120.00137 * 359.97438 * 13 12 2 15 15 N 1.34776 * 120.00002 * 180.02562 * 13 12 2 16 16 C 1.39246 * 120.00162 * 175.71136 * 15 13 12 17 17 C 1.39481 * 119.83362 * 215.02326 * 16 15 13 18 18 C 1.36375 * 120.16744 * 179.76196 * 17 16 15 19 19 C 1.40867 * 119.82699 * 0.48658 * 18 17 16 20 20 C 1.41155 * 120.15997 * 179.78792 * 19 18 17 21 21 H 1.08001 * 119.99832 * 214.75897 * 20 19 18 22 22 C 1.39896 * 120.00522 * 34.76534 * 20 19 18 23 23 N 1.30881 * 119.99622 * 355.55802 * 22 20 19 24 24 Si 1.86799 * 120.00225 * 175.55594 * 22 20 19 25 25 H 1.48496 * 109.47197 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.46553 * 119.99962 * 24 22 20 27 27 H 1.48495 * 109.47239 * 239.99636 * 24 22 20 28 28 C 1.40866 * 119.67248 * 359.75952 * 19 18 17 29 29 C 1.36368 * 119.83113 * 0.02562 * 28 19 18 30 30 H 1.09008 * 109.46895 * 299.99998 * 1 2 3 31 31 H 1.09000 * 109.47226 * 59.99152 * 1 2 3 32 32 H 1.08999 * 109.47305 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47286 * 294.99777 * 4 2 1 34 34 H 1.09002 * 109.47017 * 174.99608 * 4 2 1 35 35 H 1.08994 * 110.90611 * 338.63663 * 8 6 5 36 36 H 1.08997 * 110.90623 * 102.24168 * 8 6 5 37 37 H 1.09000 * 110.61818 * 278.51873 * 9 8 6 38 38 H 1.09001 * 110.75184 * 155.58833 * 9 8 6 39 39 H 1.09002 * 109.87807 * 267.08899 * 11 10 9 40 40 H 1.08994 * 109.88049 * 145.93901 * 11 10 9 41 41 H 0.97003 * 119.99736 * 265.00167 * 12 2 1 42 42 H 0.97001 * 120.00082 * 355.71186 * 15 13 12 43 43 H 1.08002 * 119.91282 * 359.97438 * 17 16 15 44 44 H 1.08003 * 120.08516 * 180.27346 * 18 17 16 45 45 H 0.97001 * 120.00153 * 180.02562 * 23 22 20 46 46 H 1.08002 * 120.08444 * 180.02562 * 28 19 18 47 47 H 1.08006 * 119.91880 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 8 1.4702 -2.0304 1.3093 6 6 1.8836 -2.7927 2.4452 7 1 2.8957 -2.5163 2.7410 8 6 1.7999 -4.3082 2.1403 9 6 1.2351 -4.8755 3.4675 10 8 0.2998 -3.8625 3.8959 11 6 0.9043 -2.5884 3.6172 12 7 2.0183 -0.6906 -1.1963 13 6 2.1470 -0.0182 -2.3572 14 8 1.8574 1.1614 -2.4119 15 7 2.5957 -0.6536 -3.4578 16 6 2.6443 0.0165 -4.6775 17 6 2.3832 -0.6754 -5.8601 18 6 2.4241 -0.0248 -7.0580 19 6 2.7411 1.3471 -7.0997 20 6 2.7898 2.0264 -8.3361 21 1 3.5103 2.8160 -8.4904 22 6 1.9048 1.6770 -9.3617 23 7 1.0909 0.6639 -9.2067 24 14 1.8846 2.6565 -10.9521 25 1 2.8929 3.7441 -10.8765 26 1 2.2082 1.7591 -12.0902 27 1 0.5364 3.2453 -11.1538 28 6 3.0086 2.0378 -5.9015 29 6 2.9595 1.3748 -4.7109 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.7517 -0.1584 2.1369 34 1 3.1263 -0.7996 1.2054 35 1 1.1172 -4.5013 1.3129 36 1 2.7880 -4.7180 1.9313 37 1 2.0310 -4.9984 4.2020 38 1 0.7232 -5.8225 3.2959 39 1 1.4453 -2.2350 4.4950 40 1 0.1365 -1.8672 3.3373 41 1 2.2489 -1.6318 -1.1528 42 1 2.8849 -1.5777 -3.4003 43 1 2.1447 -1.7282 -5.8268 44 1 2.2174 -0.5608 -7.9726 45 1 0.4774 0.4213 -9.9179 46 1 3.2519 3.0898 -5.9257 47 1 3.1648 1.9028 -3.7914 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122690281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:18 Heat of formation + Delta-G solvation = -96.409009 kcal Electronic energy + Delta-G solvation = -27950.709633 eV Core-core repulsion = 23905.501202 eV Total energy + Delta-G solvation = -4045.208431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -40.24576 -39.83934 -38.07688 -37.25605 -35.22051 -34.23148 -32.92663 -31.83354 -30.66114 -29.48785 -29.11381 -28.51681 -26.69274 -24.86882 -23.28537 -22.13381 -21.78608 -21.14877 -20.55629 -20.04601 -18.06304 -17.71729 -17.20986 -17.04501 -16.65286 -16.13975 -15.54715 -15.35860 -15.11116 -14.90496 -14.54799 -14.44829 -13.89539 -13.71422 -13.41719 -13.08818 -12.95108 -12.65701 -12.59744 -12.51810 -12.19645 -12.06377 -11.89809 -11.64363 -11.61113 -11.30929 -11.17906 -11.13273 -11.05370 -10.90997 -10.68675 -10.35034 -10.02621 -9.86860 -9.48509 -9.40741 -9.20230 -8.88480 -8.81600 -7.48112 -6.77425 -6.55912 -4.28035 2.71238 2.99451 3.11457 3.13066 3.14420 3.18745 3.22848 3.46947 3.75832 4.00809 4.02655 4.36930 4.46050 4.55610 4.63983 4.67419 4.76178 4.81799 4.88938 4.98801 5.07274 5.21067 5.24428 5.31659 5.39938 5.46660 5.54486 5.68643 5.72834 5.97485 6.25061 6.31830 6.33380 6.49841 6.65302 6.76486 6.82839 6.90706 7.10877 7.21966 7.33109 7.47904 7.71233 7.92645 8.03745 8.15804 8.36928 8.53922 8.70069 8.98965 8.99313 9.15961 10.35388 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.031179 B = 0.001845 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.822465 B =15169.245727 C =15506.202129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.168 3.832 3 H 0.100 0.900 4 C 0.051 3.949 5 O -0.366 6.366 6 C 0.056 3.944 7 H 0.077 0.923 8 C -0.153 4.153 9 C 0.046 3.954 10 O -0.374 6.374 11 C 0.024 3.976 12 N -0.745 5.745 13 C 0.695 3.305 14 O -0.579 6.579 15 N -0.668 5.668 16 C 0.026 3.974 17 C -0.124 4.124 18 C -0.140 4.140 19 C 0.096 3.904 20 C -0.462 4.462 21 H 0.075 0.925 22 C 0.069 3.931 23 N -0.814 5.814 24 Si 0.914 3.086 25 H -0.263 1.263 26 H -0.275 1.275 27 H -0.275 1.275 28 C -0.203 4.203 29 C -0.087 4.087 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.395 0.605 42 H 0.391 0.609 43 H 0.090 0.910 44 H 0.132 0.868 45 H 0.276 0.724 46 H 0.095 0.905 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.329 -10.357 22.653 25.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.063 3.937 3 H 0.118 0.882 4 C -0.026 4.026 5 O -0.285 6.285 6 C -0.003 4.003 7 H 0.095 0.905 8 C -0.190 4.190 9 C -0.030 4.030 10 O -0.292 6.292 11 C -0.054 4.054 12 N -0.402 5.402 13 C 0.396 3.604 14 O -0.456 6.456 15 N -0.314 5.314 16 C -0.067 4.067 17 C -0.145 4.145 18 C -0.160 4.160 19 C 0.094 3.906 20 C -0.493 4.493 21 H 0.093 0.907 22 C -0.146 4.146 23 N -0.442 5.442 24 Si 0.740 3.260 25 H -0.186 1.186 26 H -0.201 1.201 27 H -0.201 1.201 28 C -0.224 4.224 29 C -0.108 4.108 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.112 0.888 41 H 0.229 0.771 42 H 0.224 0.776 43 H 0.108 0.892 44 H 0.149 0.851 45 H 0.087 0.913 46 H 0.113 0.887 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.529 -9.474 22.445 24.411 hybrid contribution 0.396 -0.373 -0.512 0.748 sum 1.925 -9.848 21.932 24.119 Atomic orbital electron populations 1.22111 0.94862 1.02693 1.02270 1.20768 0.94903 0.96321 0.81728 0.88214 1.22980 0.97459 0.84013 0.98173 1.88017 1.69997 1.26355 1.44138 1.23529 0.97474 0.92398 0.86878 0.90528 1.23222 1.03207 0.92995 0.99618 1.23554 0.92774 0.92861 0.93858 1.88919 1.41358 1.14822 1.84146 1.23762 0.97411 0.87474 0.96708 1.45126 1.72610 1.13547 1.08916 1.16034 0.78601 0.85427 0.80329 1.90901 1.56719 1.14125 1.83895 1.42121 1.66909 1.15235 1.07091 1.17080 1.14016 0.93133 0.82477 1.20298 1.03757 0.97974 0.92435 1.21175 1.03888 0.94674 0.96285 1.17721 0.89255 0.91344 0.92290 1.19508 1.16275 1.16886 0.96609 0.90655 1.25867 0.94413 0.94647 0.99651 1.69777 1.17766 1.23503 1.33121 0.86163 0.78891 0.80165 0.80823 1.18632 1.20072 1.20057 1.20802 1.11168 0.98221 0.92169 1.20422 0.99748 0.93054 0.97536 0.92238 0.91724 0.91722 0.91705 0.92354 0.88878 0.89434 0.92008 0.88452 0.91944 0.88765 0.77106 0.77592 0.89195 0.85063 0.91304 0.88679 0.87353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.29 37.16 0.35 -1.53 16 2 C 0.17 1.87 2.98 -67.93 -0.20 1.67 16 3 H 0.10 1.23 7.58 -51.93 -0.39 0.84 16 4 C 0.05 0.39 5.54 37.15 0.21 0.60 16 5 O -0.37 -3.08 8.81 -35.23 -0.31 -3.39 16 6 C 0.06 0.37 3.51 -25.21 -0.09 0.28 16 7 H 0.08 0.38 7.86 -51.93 -0.41 -0.02 16 8 C -0.15 -0.91 6.90 -24.72 -0.17 -1.08 16 9 C 0.05 0.28 7.72 38.21 0.29 0.57 16 10 O -0.37 -3.43 11.52 -35.23 -0.41 -3.83 16 11 C 0.02 0.17 7.52 37.73 0.28 0.45 16 12 N -0.74 -9.51 5.06 -58.68 -0.30 -9.81 16 13 C 0.70 12.41 8.36 -86.92 -0.73 11.69 16 14 O -0.58 -12.77 13.42 5.29 0.07 -12.70 16 15 N -0.67 -11.98 5.31 -14.10 -0.07 -12.05 16 16 C 0.03 0.58 6.31 -83.57 -0.53 0.05 16 17 C -0.12 -2.88 9.90 -39.79 -0.39 -3.27 16 18 C -0.14 -3.66 8.61 -39.26 -0.34 -4.00 16 19 C 0.10 2.63 5.55 -106.80 -0.59 2.04 16 20 C -0.46 -12.53 9.02 -37.86 -0.34 -12.87 16 21 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 22 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16 23 N -0.81 -21.57 10.59 55.55 0.59 -20.98 16 24 Si 0.91 19.36 29.56 -169.99 -5.03 14.33 16 25 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 26 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 27 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 28 C -0.20 -5.26 9.74 -39.26 -0.38 -5.64 16 29 C -0.09 -2.14 8.61 -39.79 -0.34 -2.48 16 30 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.76 7.56 -51.93 -0.39 0.37 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 35 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 0.72 7.97 -51.93 -0.41 0.31 16 41 H 0.40 4.13 8.40 -40.82 -0.34 3.79 16 42 H 0.39 5.52 8.83 -40.82 -0.36 5.15 16 43 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 44 H 0.13 3.54 6.13 -52.48 -0.32 3.22 16 45 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 46 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 47 H 0.11 2.63 6.22 -52.48 -0.33 2.30 16 LS Contribution 386.57 15.07 5.83 5.83 Total: -1.00 -32.50 386.57 -9.85 -42.35 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -7.15 Total: 12.10 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -3.07 Total: -11.84 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.22 Total: -42.85 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.65 Total: -19.92 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.50 -9.85 -42.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122690281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.054 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds