Wall clock time and date at job start Tue Mar 31 2020 18:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47305 * 2 1 4 4 C 1.52993 * 109.47275 * 120.00423 * 2 1 3 5 5 O 1.42903 * 109.47133 * 54.99736 * 4 2 1 6 6 C 1.42906 * 113.99959 * 180.02562 * 5 4 2 7 7 H 1.09004 * 110.43212 * 328.90410 * 6 5 4 8 8 C 1.54811 * 110.48603 * 206.22034 * 6 5 4 9 9 C 1.54997 * 102.08899 * 220.44002 * 8 6 5 10 10 O 1.44382 * 103.49183 * 37.02498 * 9 8 6 11 11 C 1.43747 * 106.97323 * 319.93922 * 10 9 8 12 12 N 1.46506 * 109.46935 * 240.00403 * 2 1 3 13 13 C 1.34772 * 120.00149 * 84.99972 * 12 2 1 14 14 O 1.21586 * 120.00137 * 359.97438 * 13 12 2 15 15 N 1.34776 * 120.00002 * 180.02562 * 13 12 2 16 16 C 1.39246 * 120.00162 * 175.71136 * 15 13 12 17 17 C 1.39481 * 119.83362 * 215.02326 * 16 15 13 18 18 C 1.36375 * 120.16744 * 179.76196 * 17 16 15 19 19 C 1.40867 * 119.82699 * 0.48658 * 18 17 16 20 20 C 1.41155 * 120.15997 * 179.78792 * 19 18 17 21 21 H 1.08001 * 119.99832 * 214.75897 * 20 19 18 22 22 C 1.39896 * 120.00522 * 34.76534 * 20 19 18 23 23 N 1.30881 * 119.99622 * 355.55802 * 22 20 19 24 24 Si 1.86799 * 120.00225 * 175.55594 * 22 20 19 25 25 H 1.48496 * 109.47197 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.46553 * 119.99962 * 24 22 20 27 27 H 1.48495 * 109.47239 * 239.99636 * 24 22 20 28 28 C 1.40866 * 119.67248 * 359.75952 * 19 18 17 29 29 C 1.36368 * 119.83113 * 0.02562 * 28 19 18 30 30 H 1.09008 * 109.46895 * 299.99998 * 1 2 3 31 31 H 1.09000 * 109.47226 * 59.99152 * 1 2 3 32 32 H 1.08999 * 109.47305 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47286 * 294.99777 * 4 2 1 34 34 H 1.09002 * 109.47017 * 174.99608 * 4 2 1 35 35 H 1.08994 * 110.90611 * 338.63663 * 8 6 5 36 36 H 1.08997 * 110.90623 * 102.24168 * 8 6 5 37 37 H 1.09000 * 110.61818 * 278.51873 * 9 8 6 38 38 H 1.09001 * 110.75184 * 155.58833 * 9 8 6 39 39 H 1.09002 * 109.87807 * 267.08899 * 11 10 9 40 40 H 1.08994 * 109.88049 * 145.93901 * 11 10 9 41 41 H 0.97003 * 119.99736 * 265.00167 * 12 2 1 42 42 H 0.97001 * 120.00082 * 355.71186 * 15 13 12 43 43 H 1.08002 * 119.91282 * 359.97438 * 17 16 15 44 44 H 1.08003 * 120.08516 * 180.27346 * 18 17 16 45 45 H 0.97001 * 120.00153 * 180.02562 * 23 22 20 46 46 H 1.08002 * 120.08444 * 180.02562 * 28 19 18 47 47 H 1.08006 * 119.91880 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 8 1.4702 -2.0304 1.3093 6 6 1.8836 -2.7927 2.4452 7 1 2.8957 -2.5163 2.7410 8 6 1.7999 -4.3082 2.1403 9 6 1.2351 -4.8755 3.4675 10 8 0.2998 -3.8625 3.8959 11 6 0.9043 -2.5884 3.6172 12 7 2.0183 -0.6906 -1.1963 13 6 2.1470 -0.0182 -2.3572 14 8 1.8574 1.1614 -2.4119 15 7 2.5957 -0.6536 -3.4578 16 6 2.6443 0.0165 -4.6775 17 6 2.3832 -0.6754 -5.8601 18 6 2.4241 -0.0248 -7.0580 19 6 2.7411 1.3471 -7.0997 20 6 2.7898 2.0264 -8.3361 21 1 3.5103 2.8160 -8.4904 22 6 1.9048 1.6770 -9.3617 23 7 1.0909 0.6639 -9.2067 24 14 1.8846 2.6565 -10.9521 25 1 2.8929 3.7441 -10.8765 26 1 2.2082 1.7591 -12.0902 27 1 0.5364 3.2453 -11.1538 28 6 3.0086 2.0378 -5.9015 29 6 2.9595 1.3748 -4.7109 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.7517 -0.1584 2.1369 34 1 3.1263 -0.7996 1.2054 35 1 1.1172 -4.5013 1.3129 36 1 2.7880 -4.7180 1.9313 37 1 2.0310 -4.9984 4.2020 38 1 0.7232 -5.8225 3.2959 39 1 1.4453 -2.2350 4.4950 40 1 0.1365 -1.8672 3.3373 41 1 2.2489 -1.6318 -1.1528 42 1 2.8849 -1.5777 -3.4003 43 1 2.1447 -1.7282 -5.8268 44 1 2.2174 -0.5608 -7.9726 45 1 0.4774 0.4213 -9.9179 46 1 3.2519 3.0898 -5.9257 47 1 3.1648 1.9028 -3.7914 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122690281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:17 Heat of formation + Delta-G solvation = -118.369729 kcal Electronic energy + Delta-G solvation = -27951.661922 eV Core-core repulsion = 23905.501202 eV Total energy + Delta-G solvation = -4046.160720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -41.47052 -40.61540 -39.39956 -38.44465 -36.44785 -35.83443 -34.71523 -32.57252 -31.73538 -31.38403 -30.31294 -29.60509 -27.46819 -26.70575 -23.90617 -23.55878 -22.87138 -22.28083 -21.94413 -21.50072 -19.50991 -19.12890 -18.44599 -18.02813 -17.52094 -17.06261 -16.83823 -16.42211 -16.34758 -15.91941 -15.71633 -15.62886 -15.30660 -14.87929 -14.69470 -14.49945 -14.14065 -13.95575 -13.69484 -13.55987 -13.40091 -13.22730 -13.11988 -12.88474 -12.83038 -12.74488 -12.46592 -12.40854 -12.31433 -11.94048 -11.78846 -11.64098 -11.37054 -11.22556 -11.00394 -10.87006 -10.62883 -10.39906 -10.07796 -9.43726 -8.66415 -8.47836 -6.30093 0.86839 1.17020 1.40133 1.47711 1.55596 1.77159 2.23146 2.27036 2.53967 2.83636 3.01357 3.38962 3.54628 3.71017 3.80454 3.91083 4.07463 4.09347 4.23247 4.32481 4.41405 4.44337 4.48387 4.54680 4.59464 4.67525 4.77954 4.80708 4.83054 4.93921 4.95688 4.99607 5.09032 5.16329 5.17490 5.33723 5.36099 5.46954 5.58643 5.72064 5.85029 5.85970 6.06267 6.14543 6.22268 6.29330 6.42588 6.71161 6.99481 7.03913 7.19018 7.69332 8.45040 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.031179 B = 0.001845 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.822465 B =15169.245727 C =15506.202129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.163 3.837 3 H 0.088 0.912 4 C 0.060 3.940 5 O -0.382 6.382 6 C 0.055 3.945 7 H 0.100 0.900 8 C -0.151 4.151 9 C 0.042 3.958 10 O -0.405 6.405 11 C 0.020 3.980 12 N -0.722 5.722 13 C 0.694 3.306 14 O -0.623 6.623 15 N -0.661 5.661 16 C 0.044 3.956 17 C -0.122 4.122 18 C -0.157 4.157 19 C 0.063 3.937 20 C -0.498 4.498 21 H 0.072 0.928 22 C 0.026 3.974 23 N -0.844 5.844 24 Si 0.989 3.011 25 H -0.260 1.260 26 H -0.263 1.263 27 H -0.270 1.270 28 C -0.218 4.218 29 C -0.098 4.098 30 H 0.080 0.920 31 H 0.028 0.972 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.411 0.589 42 H 0.413 0.587 43 H 0.123 0.877 44 H 0.119 0.881 45 H 0.284 0.716 46 H 0.095 0.905 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.947 -11.662 24.171 26.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.058 3.942 3 H 0.106 0.894 4 C -0.016 4.016 5 O -0.302 6.302 6 C -0.003 4.003 7 H 0.118 0.882 8 C -0.188 4.188 9 C -0.034 4.034 10 O -0.325 6.325 11 C -0.057 4.057 12 N -0.379 5.379 13 C 0.394 3.606 14 O -0.503 6.503 15 N -0.308 5.308 16 C -0.050 4.050 17 C -0.143 4.143 18 C -0.178 4.178 19 C 0.061 3.939 20 C -0.529 4.529 21 H 0.090 0.910 22 C -0.186 4.186 23 N -0.472 5.472 24 Si 0.810 3.190 25 H -0.184 1.184 26 H -0.187 1.187 27 H -0.195 1.195 28 C -0.238 4.238 29 C -0.119 4.119 30 H 0.099 0.901 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.125 0.875 37 H 0.097 0.903 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.247 0.753 42 H 0.250 0.750 43 H 0.141 0.859 44 H 0.137 0.863 45 H 0.094 0.906 46 H 0.114 0.886 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.162 -10.853 24.029 26.455 hybrid contribution 0.175 -0.063 -0.767 0.789 sum 2.338 -10.916 23.263 25.803 Atomic orbital electron populations 1.22035 0.95295 1.02341 1.01574 1.20943 0.94525 0.96360 0.82366 0.89426 1.22878 0.98069 0.83945 0.96740 1.87991 1.70491 1.26569 1.45107 1.23669 0.98304 0.92364 0.85983 0.88246 1.23229 1.03848 0.92821 0.98946 1.23736 0.92891 0.92452 0.94328 1.88881 1.42984 1.16088 1.84546 1.23859 0.97406 0.86716 0.97743 1.44974 1.71037 1.14119 1.07737 1.16204 0.78191 0.84970 0.81213 1.90881 1.58432 1.16298 1.84713 1.41908 1.67112 1.16086 1.05734 1.17095 1.11192 0.92596 0.84160 1.20530 1.02645 0.99513 0.91567 1.21159 1.05081 0.94478 0.97034 1.18039 0.90640 0.92265 0.92962 1.19727 1.17574 1.17804 0.97762 0.90999 1.26740 0.93458 0.95542 1.02817 1.69840 1.18250 1.24649 1.34458 0.85056 0.78909 0.78656 0.76396 1.18386 1.18721 1.19544 1.20924 1.11781 0.98522 0.92571 1.20532 1.00224 0.94170 0.96930 0.90091 0.95272 0.91781 0.89528 0.90812 0.90473 0.87477 0.90271 0.87950 0.90298 0.89772 0.75272 0.75009 0.85904 0.86337 0.90580 0.88648 0.87323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.29 71.98 0.67 -2.76 16 2 C 0.16 3.34 2.98 44.99 0.13 3.47 16 3 H 0.09 2.07 7.58 -2.39 -0.02 2.05 16 4 C 0.06 0.75 5.54 71.98 0.40 1.15 16 5 O -0.38 -5.33 8.81 -148.98 -1.31 -6.65 16 6 C 0.05 0.55 3.51 31.58 0.11 0.67 16 7 H 0.10 0.57 7.86 -2.38 -0.02 0.56 16 8 C -0.15 -1.42 6.90 31.90 0.22 -1.20 16 9 C 0.04 0.42 7.72 72.67 0.56 0.98 16 10 O -0.41 -6.86 11.52 -148.98 -1.72 -8.58 16 11 C 0.02 0.24 7.52 72.35 0.54 0.79 16 12 N -0.72 -17.01 5.06 -457.82 -2.32 -19.33 16 13 C 0.69 23.96 8.36 179.06 1.50 25.45 16 14 O -0.62 -27.49 13.42 -3.99 -0.05 -27.55 16 15 N -0.66 -22.56 5.31 -316.78 -1.68 -24.24 16 16 C 0.04 1.95 6.31 38.56 0.24 2.20 16 17 C -0.12 -5.60 9.90 22.13 0.22 -5.38 16 18 C -0.16 -8.39 8.61 22.48 0.19 -8.20 16 19 C 0.06 3.58 5.55 -21.28 -0.12 3.46 16 20 C -0.50 -27.95 9.02 23.39 0.21 -27.74 16 21 H 0.07 3.91 7.85 -2.91 -0.02 3.89 16 22 C 0.03 1.35 5.42 85.24 0.46 1.81 16 23 N -0.84 -45.52 10.59 21.82 0.23 -45.29 16 24 Si 0.99 40.03 29.56 68.60 2.03 42.06 16 25 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 26 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 27 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 28 C -0.22 -11.64 9.74 22.48 0.22 -11.42 16 29 C -0.10 -4.87 8.61 22.13 0.19 -4.68 16 30 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 1.43 7.56 -2.39 -0.02 1.41 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.73 8.10 -2.39 -0.02 0.71 16 35 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 36 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.08 1.16 7.97 -2.39 -0.02 1.14 16 41 H 0.41 7.37 8.40 -92.71 -0.78 6.59 16 42 H 0.41 10.48 8.83 -92.71 -0.82 9.66 16 43 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 44 H 0.12 6.57 6.13 -2.91 -0.02 6.55 16 45 H 0.28 13.87 8.30 -92.71 -0.77 13.10 16 46 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 47 H 0.11 5.36 6.22 -2.91 -0.02 5.34 16 Total: -1.00 -73.13 386.57 0.33 -72.80 By element: Atomic # 1 Polarization: 38.77 SS G_CDS: -0.60 Total: 38.17 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 5.75 Total: -21.41 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -3.77 Total: -88.85 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -3.08 Total: -42.77 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -73.13 0.33 -72.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122690281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.570 kcal (2) G-P(sol) polarization free energy of solvation -73.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds