Wall clock time and date at job start Tue Mar 31 2020 18:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47343 * 239.99835 * 2 1 3 5 5 O 1.42903 * 109.46920 * 304.99635 * 4 2 1 6 6 C 1.42905 * 113.99661 * 179.97438 * 5 4 2 7 7 H 1.08996 * 110.75180 * 327.98174 * 6 5 4 8 8 C 1.55571 * 111.00924 * 204.40829 * 6 5 4 9 9 C 1.54937 * 100.82445 * 207.60810 * 8 6 5 10 10 O 1.43647 * 105.22570 * 36.44494 * 9 8 6 11 11 C 1.43240 * 109.96669 * 335.52037 * 10 9 8 12 12 N 1.46500 * 109.47019 * 119.99478 * 2 1 3 13 13 C 1.34776 * 120.00272 * 275.00351 * 12 2 1 14 14 O 1.21575 * 119.99847 * 359.97438 * 13 12 2 15 15 N 1.34774 * 120.00071 * 179.97438 * 13 12 2 16 16 C 1.39234 * 120.00191 * 174.98445 * 15 13 12 17 17 C 1.39487 * 119.83636 * 326.26934 * 16 15 13 18 18 C 1.36370 * 120.17013 * 179.75405 * 17 16 15 19 19 C 1.40862 * 119.83017 * 0.51926 * 18 17 16 20 20 C 1.41155 * 120.16497 * 179.76061 * 19 18 17 21 21 H 1.08002 * 119.99896 * 331.24460 * 20 19 18 22 22 C 1.39895 * 120.00135 * 151.24612 * 20 19 18 23 23 N 1.30877 * 120.00259 * 166.35896 * 22 20 19 24 24 Si 1.86803 * 119.99809 * 346.35617 * 22 20 19 25 25 H 1.48500 * 109.46844 * 95.31164 * 24 22 20 26 26 H 1.48501 * 109.47051 * 215.31074 * 24 22 20 27 27 H 1.48496 * 109.47269 * 335.31229 * 24 22 20 28 28 C 1.40874 * 119.67094 * 359.73523 * 19 18 17 29 29 C 1.36372 * 119.82718 * 0.02562 * 28 19 18 30 30 H 1.09003 * 109.47067 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47191 * 300.00314 * 1 2 3 32 32 H 1.09002 * 109.46884 * 60.00775 * 1 2 3 33 33 H 1.09006 * 109.47136 * 185.00324 * 4 2 1 34 34 H 1.08996 * 109.47565 * 64.99856 * 4 2 1 35 35 H 1.09006 * 111.22305 * 89.71078 * 8 6 5 36 36 H 1.08995 * 111.13520 * 325.47240 * 8 6 5 37 37 H 1.08999 * 110.31329 * 277.47863 * 9 8 6 38 38 H 1.08999 * 110.31044 * 155.41022 * 9 8 6 39 39 H 1.09002 * 109.82809 * 121.22745 * 11 10 9 40 40 H 1.09000 * 109.83140 * 242.10445 * 11 10 9 41 41 H 0.97006 * 119.99672 * 95.00406 * 12 2 1 42 42 H 0.97004 * 119.99822 * 354.99066 * 15 13 12 43 43 H 1.08007 * 119.91263 * 0.02562 * 17 16 15 44 44 H 1.08001 * 120.08309 * 180.25139 * 18 17 16 45 45 H 0.96997 * 119.99979 * 179.97438 * 23 22 20 46 46 H 1.08003 * 120.08426 * 180.02562 * 28 19 18 47 47 H 1.08003 * 119.90890 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 1.4703 -2.0304 -1.3093 6 6 1.8838 -2.7926 -2.4452 7 1 2.0665 -2.1425 -3.3007 8 6 0.8341 -3.8861 -2.7952 9 6 1.7366 -4.9514 -3.4669 10 8 2.9722 -4.9146 -2.7353 11 6 3.1362 -3.6332 -2.1164 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3572 14 8 1.8582 1.1616 2.4116 15 7 2.5957 -0.6535 3.4578 16 6 2.8281 0.0626 4.6290 17 6 3.2875 1.3777 4.5588 18 6 3.5125 2.0871 5.7015 19 6 3.2903 1.4847 6.9553 20 6 3.5257 2.2107 8.1427 21 1 4.2704 2.9928 8.1588 22 6 2.7946 1.9172 9.2987 23 7 3.1827 2.3893 10.4561 24 14 1.2641 0.8516 9.1904 25 1 1.6201 -0.5580 9.4930 26 1 0.2576 1.3297 10.1721 27 1 0.6981 0.9360 7.8202 28 6 2.8313 0.1543 7.0183 29 6 2.6061 -0.5407 5.8668 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 3.1264 -0.7995 -1.2055 34 1 1.7518 -0.1584 -2.1369 35 1 0.0874 -3.5073 -3.4932 36 1 0.3630 -4.2812 -1.8952 37 1 1.9084 -4.6968 -4.5127 38 1 1.2798 -5.9380 -3.3886 39 1 3.2282 -3.7531 -1.0369 40 1 4.0262 -3.1432 -2.5110 41 1 2.2491 -1.6317 1.1527 42 1 2.7569 -1.6098 3.4339 43 1 3.4612 1.8369 3.5967 44 1 3.8643 3.1066 5.6454 45 1 2.6755 2.1861 11.2575 46 1 2.6583 -0.3139 7.9761 47 1 2.2547 -1.5609 5.9136 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122690524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:23 Heat of formation + Delta-G solvation = -94.772788 kcal Electronic energy + Delta-G solvation = -28112.804791 eV Core-core repulsion = 24067.667312 eV Total energy + Delta-G solvation = -4045.137480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.31542 -39.93580 -38.24607 -37.50184 -35.34066 -34.32303 -33.10898 -31.93379 -30.89776 -29.86729 -29.30464 -29.03378 -26.79042 -24.77190 -23.05378 -22.34224 -22.05660 -21.51681 -20.56482 -20.24899 -18.25550 -17.86936 -17.34275 -17.08874 -16.98881 -16.16598 -15.64447 -15.49157 -15.15545 -14.98433 -14.64143 -14.33282 -13.95165 -13.83136 -13.63384 -13.51473 -13.25282 -12.77597 -12.68888 -12.58663 -12.45260 -12.26653 -12.08956 -12.05158 -11.90373 -11.73391 -11.24454 -11.17954 -11.02533 -10.76681 -10.34089 -10.13547 -10.08019 -9.99846 -9.66404 -9.58539 -9.49573 -8.98495 -8.82475 -7.74237 -7.09621 -6.89638 -4.38340 2.49867 2.76890 2.87122 3.01439 3.12094 3.25312 3.36705 3.45111 3.61590 3.87962 4.02406 4.30980 4.35811 4.47256 4.56002 4.57576 4.61875 4.74454 4.78789 4.92071 5.12388 5.17400 5.19206 5.26041 5.36107 5.37868 5.47166 5.47901 5.61961 5.86917 5.97219 6.13131 6.21162 6.43458 6.49771 6.54505 6.63473 6.71272 6.79904 6.90789 7.05765 7.26827 7.44726 7.68156 7.72112 7.88940 8.17233 8.38000 8.38889 8.67782 8.83660 9.01200 10.12659 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024491 B = 0.002048 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.023305 B =13667.636546 C =13949.772793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.168 3.832 3 H 0.101 0.899 4 C 0.051 3.949 5 O -0.364 6.364 6 C 0.056 3.944 7 H 0.079 0.921 8 C -0.152 4.152 9 C 0.050 3.950 10 O -0.379 6.379 11 C 0.027 3.973 12 N -0.745 5.745 13 C 0.696 3.304 14 O -0.579 6.579 15 N -0.668 5.668 16 C 0.017 3.983 17 C -0.069 4.069 18 C -0.197 4.197 19 C 0.085 3.915 20 C -0.440 4.440 21 H 0.090 0.910 22 C 0.080 3.920 23 N -0.813 5.813 24 Si 0.914 3.086 25 H -0.273 1.273 26 H -0.294 1.294 27 H -0.240 1.240 28 C -0.226 4.226 29 C -0.093 4.093 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.396 0.604 42 H 0.392 0.608 43 H 0.109 0.891 44 H 0.103 0.897 45 H 0.284 0.716 46 H 0.101 0.899 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.153 -12.524 -26.265 29.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.063 3.937 3 H 0.119 0.881 4 C -0.026 4.026 5 O -0.283 6.283 6 C -0.002 4.002 7 H 0.097 0.903 8 C -0.190 4.190 9 C -0.026 4.026 10 O -0.299 6.299 11 C -0.050 4.050 12 N -0.402 5.402 13 C 0.397 3.603 14 O -0.456 6.456 15 N -0.314 5.314 16 C -0.076 4.076 17 C -0.089 4.089 18 C -0.217 4.217 19 C 0.082 3.918 20 C -0.469 4.469 21 H 0.108 0.892 22 C -0.138 4.138 23 N -0.438 5.438 24 Si 0.742 3.258 25 H -0.199 1.199 26 H -0.222 1.222 27 H -0.163 1.163 28 C -0.246 4.246 29 C -0.113 4.113 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.230 0.770 42 H 0.225 0.775 43 H 0.127 0.873 44 H 0.121 0.879 45 H 0.095 0.905 46 H 0.118 0.882 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.382 -11.570 -25.801 28.614 hybrid contribution -0.451 -1.111 -0.065 1.201 sum -4.833 -12.681 -25.866 29.210 Atomic orbital electron populations 1.22108 0.94885 1.02616 1.02296 1.20785 0.94862 0.96405 0.81687 0.88088 1.22997 0.97714 0.83660 0.98254 1.87970 1.69547 1.26481 1.44326 1.23712 0.93942 0.93323 0.89256 0.90317 1.23353 0.98051 0.95159 1.02401 1.23352 0.83970 0.99872 0.95401 1.88455 1.39994 1.32890 1.68526 1.23680 0.97786 0.84192 0.99323 1.45121 1.72598 1.13683 1.08756 1.15992 0.78541 0.85419 0.80383 1.90917 1.56218 1.14320 1.84103 1.42092 1.68695 1.10719 1.09908 1.16889 1.13252 0.94267 0.83210 1.20400 0.97386 0.93083 0.98019 1.20666 1.10285 0.99030 0.91684 1.17781 0.89805 0.90975 0.93273 1.19475 1.18588 1.16821 0.92029 0.89164 1.26185 0.99049 0.94285 0.94256 1.69688 1.36986 1.37739 0.99370 0.86290 0.80694 0.79009 0.79851 1.19926 1.22207 1.16326 1.20493 1.12473 0.95558 0.96051 1.20045 1.01239 0.98440 0.91584 0.91778 0.91760 0.92175 0.92288 0.91479 0.89217 0.89025 0.91910 0.89167 0.90038 0.91128 0.77049 0.77451 0.87334 0.87910 0.90521 0.88156 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.29 37.16 0.35 -1.32 16 2 C 0.17 1.71 2.98 -67.93 -0.20 1.51 16 3 H 0.10 1.16 7.58 -51.93 -0.39 0.77 16 4 C 0.05 0.36 5.55 37.16 0.21 0.57 16 5 O -0.36 -2.75 8.94 -35.23 -0.32 -3.07 16 6 C 0.06 0.34 3.45 -24.64 -0.08 0.26 16 7 H 0.08 0.37 7.89 -51.93 -0.41 -0.04 16 8 C -0.15 -0.81 6.92 -24.34 -0.17 -0.98 16 9 C 0.05 0.28 7.77 38.18 0.30 0.58 16 10 O -0.38 -3.32 11.36 -35.23 -0.40 -3.72 16 11 C 0.03 0.19 7.58 37.88 0.29 0.48 16 12 N -0.74 -8.81 5.06 -58.68 -0.30 -9.10 16 13 C 0.70 11.65 8.25 -86.92 -0.72 10.94 16 14 O -0.58 -12.09 13.67 5.30 0.07 -12.02 16 15 N -0.67 -11.20 5.32 -14.10 -0.07 -11.28 16 16 C 0.02 0.35 6.29 -83.57 -0.53 -0.17 16 17 C -0.07 -1.58 8.57 -39.79 -0.34 -1.92 16 18 C -0.20 -4.82 9.74 -39.26 -0.38 -5.20 16 19 C 0.08 2.21 5.18 -106.80 -0.55 1.65 16 20 C -0.44 -12.13 9.59 -37.86 -0.36 -12.49 16 21 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 22 C 0.08 2.15 5.46 -17.34 -0.09 2.05 16 23 N -0.81 -22.02 13.93 55.54 0.77 -21.25 16 24 Si 0.91 21.34 24.37 -169.99 -4.14 17.19 16 25 H -0.27 -6.10 6.76 56.52 0.38 -5.72 16 26 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.24 -5.82 6.51 56.52 0.37 -5.45 16 28 C -0.23 -5.49 6.88 -39.26 -0.27 -5.76 16 29 C -0.09 -2.00 9.89 -39.79 -0.39 -2.40 16 30 H 0.06 0.66 7.56 -51.93 -0.39 0.27 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.36 8.11 -51.93 -0.42 -0.06 16 35 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.62 8.05 -51.93 -0.42 0.20 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.40 3.80 8.40 -40.82 -0.34 3.46 16 42 H 0.39 5.12 8.83 -40.82 -0.36 4.76 16 43 H 0.11 2.45 6.41 -52.48 -0.34 2.12 16 44 H 0.10 2.40 8.06 -52.49 -0.42 1.98 16 45 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 46 H 0.10 2.41 4.23 -52.48 -0.22 2.19 16 47 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 381.07 15.07 5.74 5.74 Total: -1.00 -32.20 381.07 -8.74 -40.93 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -7.13 Total: 8.78 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -2.96 Total: -12.21 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.40 Total: -41.63 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.64 Total: -18.81 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.14 Total: 17.19 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.20 -8.74 -40.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122690524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.840 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds