Wall clock time and date at job start Tue Mar 31 2020 18:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47343 * 239.99835 * 2 1 3 5 5 O 1.42903 * 109.46920 * 304.99635 * 4 2 1 6 6 C 1.42905 * 113.99661 * 179.97438 * 5 4 2 7 7 H 1.08996 * 110.75180 * 327.98174 * 6 5 4 8 8 C 1.55571 * 111.00924 * 204.40829 * 6 5 4 9 9 C 1.54937 * 100.82445 * 207.60810 * 8 6 5 10 10 O 1.43647 * 105.22570 * 36.44494 * 9 8 6 11 11 C 1.43240 * 109.96669 * 335.52037 * 10 9 8 12 12 N 1.46500 * 109.47019 * 119.99478 * 2 1 3 13 13 C 1.34776 * 120.00272 * 275.00351 * 12 2 1 14 14 O 1.21575 * 119.99847 * 359.97438 * 13 12 2 15 15 N 1.34774 * 120.00071 * 179.97438 * 13 12 2 16 16 C 1.39234 * 120.00191 * 174.98445 * 15 13 12 17 17 C 1.39487 * 119.83636 * 326.26934 * 16 15 13 18 18 C 1.36370 * 120.17013 * 179.75405 * 17 16 15 19 19 C 1.40862 * 119.83017 * 0.51926 * 18 17 16 20 20 C 1.41155 * 120.16497 * 179.76061 * 19 18 17 21 21 H 1.08002 * 119.99896 * 331.24460 * 20 19 18 22 22 C 1.39895 * 120.00135 * 151.24612 * 20 19 18 23 23 N 1.30877 * 120.00259 * 166.35896 * 22 20 19 24 24 Si 1.86803 * 119.99809 * 346.35617 * 22 20 19 25 25 H 1.48500 * 109.46844 * 95.31164 * 24 22 20 26 26 H 1.48501 * 109.47051 * 215.31074 * 24 22 20 27 27 H 1.48496 * 109.47269 * 335.31229 * 24 22 20 28 28 C 1.40874 * 119.67094 * 359.73523 * 19 18 17 29 29 C 1.36372 * 119.82718 * 0.02562 * 28 19 18 30 30 H 1.09003 * 109.47067 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47191 * 300.00314 * 1 2 3 32 32 H 1.09002 * 109.46884 * 60.00775 * 1 2 3 33 33 H 1.09006 * 109.47136 * 185.00324 * 4 2 1 34 34 H 1.08996 * 109.47565 * 64.99856 * 4 2 1 35 35 H 1.09006 * 111.22305 * 89.71078 * 8 6 5 36 36 H 1.08995 * 111.13520 * 325.47240 * 8 6 5 37 37 H 1.08999 * 110.31329 * 277.47863 * 9 8 6 38 38 H 1.08999 * 110.31044 * 155.41022 * 9 8 6 39 39 H 1.09002 * 109.82809 * 121.22745 * 11 10 9 40 40 H 1.09000 * 109.83140 * 242.10445 * 11 10 9 41 41 H 0.97006 * 119.99672 * 95.00406 * 12 2 1 42 42 H 0.97004 * 119.99822 * 354.99066 * 15 13 12 43 43 H 1.08007 * 119.91263 * 0.02562 * 17 16 15 44 44 H 1.08001 * 120.08309 * 180.25139 * 18 17 16 45 45 H 0.96997 * 119.99979 * 179.97438 * 23 22 20 46 46 H 1.08003 * 120.08426 * 180.02562 * 28 19 18 47 47 H 1.08003 * 119.90890 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 1.4703 -2.0304 -1.3093 6 6 1.8838 -2.7926 -2.4452 7 1 2.0665 -2.1425 -3.3007 8 6 0.8341 -3.8861 -2.7952 9 6 1.7366 -4.9514 -3.4669 10 8 2.9722 -4.9146 -2.7353 11 6 3.1362 -3.6332 -2.1164 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3572 14 8 1.8582 1.1616 2.4116 15 7 2.5957 -0.6535 3.4578 16 6 2.8281 0.0626 4.6290 17 6 3.2875 1.3777 4.5588 18 6 3.5125 2.0871 5.7015 19 6 3.2903 1.4847 6.9553 20 6 3.5257 2.2107 8.1427 21 1 4.2704 2.9928 8.1588 22 6 2.7946 1.9172 9.2987 23 7 3.1827 2.3893 10.4561 24 14 1.2641 0.8516 9.1904 25 1 1.6201 -0.5580 9.4930 26 1 0.2576 1.3297 10.1721 27 1 0.6981 0.9360 7.8202 28 6 2.8313 0.1543 7.0183 29 6 2.6061 -0.5407 5.8668 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 3.1264 -0.7995 -1.2055 34 1 1.7518 -0.1584 -2.1369 35 1 0.0874 -3.5073 -3.4932 36 1 0.3630 -4.2812 -1.8952 37 1 1.9084 -4.6968 -4.5127 38 1 1.2798 -5.9380 -3.3886 39 1 3.2282 -3.7531 -1.0369 40 1 4.0262 -3.1432 -2.5110 41 1 2.2491 -1.6317 1.1527 42 1 2.7569 -1.6098 3.4339 43 1 3.4612 1.8369 3.5967 44 1 3.8643 3.1066 5.6454 45 1 2.6755 2.1861 11.2575 46 1 2.6583 -0.3139 7.9761 47 1 2.2547 -1.5609 5.9136 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122690524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:22 Heat of formation + Delta-G solvation = -117.939374 kcal Electronic energy + Delta-G solvation = -28113.809370 eV Core-core repulsion = 24067.667312 eV Total energy + Delta-G solvation = -4046.142058 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.52332 -40.62578 -39.59477 -38.53540 -36.48900 -35.85944 -34.91970 -32.67878 -31.89897 -31.72447 -30.75352 -29.65994 -27.48014 -26.55903 -24.01105 -23.50177 -22.93700 -22.51255 -22.06434 -21.53110 -19.68104 -19.18061 -18.60713 -18.26975 -17.57267 -17.27298 -16.86357 -16.39392 -16.18144 -15.96422 -15.86171 -15.64321 -15.28229 -14.98328 -14.76739 -14.53672 -14.32014 -14.21192 -14.15701 -14.02435 -13.77135 -13.39630 -13.19640 -12.87954 -12.72336 -12.60671 -12.52777 -12.37382 -12.21169 -11.95081 -11.88436 -11.65973 -11.51919 -11.33791 -11.19767 -10.63744 -10.60202 -10.49620 -10.10026 -9.59062 -8.90138 -8.86004 -6.41315 0.68180 0.88463 1.25746 1.41635 1.50891 1.74933 2.12558 2.17193 2.42680 2.67890 3.01170 3.35523 3.45691 3.52599 3.76080 3.90069 4.01898 4.09126 4.20398 4.23979 4.30480 4.31516 4.42004 4.48491 4.59185 4.66853 4.71334 4.75844 4.81121 4.85144 4.91523 4.94809 4.95617 5.02426 5.07768 5.12324 5.35507 5.38357 5.47178 5.57684 5.68809 5.85166 5.96105 5.97757 6.13546 6.16977 6.26370 6.39653 6.74214 6.82812 7.14985 7.66215 8.21394 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024491 B = 0.002048 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.023305 B =13667.636546 C =13949.772793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 H 0.088 0.912 4 C 0.059 3.941 5 O -0.376 6.376 6 C 0.057 3.943 7 H 0.099 0.901 8 C -0.148 4.148 9 C 0.045 3.955 10 O -0.407 6.407 11 C 0.023 3.977 12 N -0.722 5.722 13 C 0.695 3.305 14 O -0.621 6.621 15 N -0.662 5.662 16 C 0.044 3.956 17 C -0.079 4.079 18 C -0.208 4.208 19 C 0.063 3.937 20 C -0.478 4.478 21 H 0.054 0.946 22 C 0.043 3.957 23 N -0.854 5.854 24 Si 0.969 3.031 25 H -0.251 1.251 26 H -0.283 1.283 27 H -0.254 1.254 28 C -0.230 4.230 29 C -0.094 4.094 30 H 0.066 0.934 31 H 0.030 0.970 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.411 0.589 42 H 0.415 0.585 43 H 0.111 0.889 44 H 0.099 0.901 45 H 0.293 0.707 46 H 0.105 0.895 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.565 -15.332 -29.321 33.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.057 3.943 3 H 0.106 0.894 4 C -0.018 4.018 5 O -0.295 6.295 6 C -0.001 4.001 7 H 0.116 0.884 8 C -0.186 4.186 9 C -0.030 4.030 10 O -0.327 6.327 11 C -0.053 4.053 12 N -0.379 5.379 13 C 0.395 3.605 14 O -0.501 6.501 15 N -0.310 5.310 16 C -0.050 4.050 17 C -0.099 4.099 18 C -0.228 4.228 19 C 0.060 3.940 20 C -0.508 4.508 21 H 0.073 0.927 22 C -0.171 4.171 23 N -0.481 5.481 24 Si 0.793 3.207 25 H -0.176 1.176 26 H -0.210 1.210 27 H -0.178 1.178 28 C -0.250 4.250 29 C -0.114 4.114 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.126 0.874 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.247 0.753 42 H 0.252 0.748 43 H 0.129 0.871 44 H 0.117 0.883 45 H 0.104 0.896 46 H 0.122 0.878 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.783 -14.445 -28.910 32.831 hybrid contribution 0.007 -0.312 0.560 0.641 sum -5.776 -14.757 -28.350 32.478 Atomic orbital electron populations 1.22031 0.94854 1.02554 1.01729 1.20961 0.94848 0.96276 0.82167 0.89442 1.22908 0.98012 0.83676 0.97161 1.87945 1.69690 1.26610 1.45259 1.23801 0.93553 0.93437 0.89284 0.88353 1.23347 0.98134 0.94792 1.02305 1.23534 0.83100 1.00517 0.95896 1.88421 1.41430 1.33827 1.69072 1.23739 0.98775 0.84040 0.98791 1.44999 1.71043 1.14241 1.07639 1.16163 0.78113 0.84959 0.81227 1.90904 1.57929 1.16429 1.84861 1.41922 1.68692 1.11671 1.08687 1.17014 1.09549 0.93548 0.84908 1.20512 0.97774 0.94184 0.97435 1.20780 1.10603 0.99345 0.92110 1.17894 0.91117 0.92036 0.92963 1.19430 1.19801 1.17659 0.93922 0.92733 1.26856 1.01173 0.95456 0.93619 1.69715 1.38562 1.39724 1.00069 0.85453 0.77462 0.78649 0.79105 1.17622 1.20980 1.17778 1.20654 1.12054 0.94856 0.97435 1.20401 1.00296 1.00222 0.90486 0.91460 0.95080 0.90018 0.91420 0.89036 0.87443 0.90151 0.90467 0.88561 0.90995 0.90393 0.75315 0.74785 0.87071 0.88309 0.89635 0.87754 0.84415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.29 71.98 0.67 -2.18 16 2 C 0.16 2.90 2.98 44.99 0.13 3.04 16 3 H 0.09 1.87 7.58 -2.39 -0.02 1.85 16 4 C 0.06 0.62 5.55 71.98 0.40 1.02 16 5 O -0.38 -4.37 8.94 -148.98 -1.33 -5.70 16 6 C 0.06 0.51 3.45 31.95 0.11 0.62 16 7 H 0.10 0.52 7.89 -2.39 -0.02 0.50 16 8 C -0.15 -1.16 6.92 32.14 0.22 -0.94 16 9 C 0.05 0.41 7.77 72.64 0.56 0.97 16 10 O -0.41 -6.41 11.36 -148.98 -1.69 -8.11 16 11 C 0.02 0.28 7.58 72.45 0.55 0.83 16 12 N -0.72 -15.12 5.06 -457.84 -2.32 -17.44 16 13 C 0.69 21.72 8.25 179.06 1.48 23.20 16 14 O -0.62 -25.33 13.67 -3.95 -0.05 -25.39 16 15 N -0.66 -20.11 5.32 -316.80 -1.68 -21.80 16 16 C 0.04 1.78 6.29 38.57 0.24 2.02 16 17 C -0.08 -3.58 8.57 22.13 0.19 -3.39 16 18 C -0.21 -10.47 9.74 22.48 0.22 -10.25 16 19 C 0.06 3.33 5.18 -21.28 -0.11 3.22 16 20 C -0.48 -27.77 9.59 23.39 0.22 -27.54 16 21 H 0.05 3.41 8.06 -2.91 -0.02 3.38 16 22 C 0.04 2.34 5.46 85.24 0.47 2.81 16 23 N -0.85 -47.94 13.93 21.82 0.30 -47.64 16 24 Si 0.97 43.87 24.37 68.60 1.67 45.54 16 25 H -0.25 -10.40 6.76 99.48 0.67 -9.72 16 26 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 27 H -0.25 -11.93 6.51 99.48 0.65 -11.29 16 28 C -0.23 -10.92 6.88 22.48 0.15 -10.76 16 29 C -0.09 -3.77 9.89 22.13 0.22 -3.55 16 30 H 0.07 1.21 7.56 -2.39 -0.02 1.19 16 31 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 0.63 8.14 -2.38 -0.02 0.62 16 34 H 0.09 0.59 8.11 -2.39 -0.02 0.57 16 35 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 36 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.07 0.96 8.05 -2.39 -0.02 0.94 16 40 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.41 6.46 8.40 -92.70 -0.78 5.68 16 42 H 0.42 9.06 8.83 -92.71 -0.82 8.24 16 43 H 0.11 5.00 6.41 -2.91 -0.02 4.98 16 44 H 0.10 4.88 8.06 -2.91 -0.02 4.85 16 45 H 0.29 14.77 8.30 -92.71 -0.77 14.00 16 46 H 0.10 4.83 4.23 -2.91 -0.01 4.82 16 47 H 0.14 4.38 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -72.80 381.07 -0.06 -72.86 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: -0.69 Total: 28.57 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: 5.73 Total: -20.89 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -3.70 Total: -86.88 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -3.08 Total: -39.20 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.67 Total: 45.54 kcal Total: -72.80 -0.06 -72.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122690524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.079 kcal (2) G-P(sol) polarization free energy of solvation -72.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds