Wall clock time and date at job start Tue Mar 31 2020 18:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47207 * 2 1 4 4 C 1.52999 * 109.47101 * 119.99905 * 2 1 3 5 5 O 1.42904 * 109.47334 * 54.99963 * 4 2 1 6 6 C 1.42897 * 114.00201 * 179.97438 * 5 4 2 7 7 H 1.09002 * 110.75268 * 32.01802 * 6 5 4 8 8 C 1.55300 * 110.84862 * 155.71341 * 6 5 4 9 9 C 1.54952 * 100.94188 * 152.32561 * 8 6 5 10 10 O 1.43648 * 105.13475 * 323.55477 * 9 8 6 11 11 C 1.43241 * 109.96976 * 24.43078 * 10 9 8 12 12 N 1.46493 * 109.47230 * 239.99863 * 2 1 3 13 13 C 1.34772 * 119.99910 * 84.99664 * 12 2 1 14 14 O 1.21585 * 120.00149 * 0.02562 * 13 12 2 15 15 N 1.34779 * 120.00186 * 179.97438 * 13 12 2 16 16 C 1.39240 * 120.00016 * 175.71005 * 15 13 12 17 17 C 1.39484 * 119.83340 * 215.01801 * 16 15 13 18 18 C 1.36370 * 120.16906 * 179.76097 * 17 16 15 19 19 C 1.40874 * 119.82952 * 0.51852 * 18 17 16 20 20 C 1.41153 * 120.16848 * 179.76001 * 19 18 17 21 21 H 1.08001 * 120.00134 * 214.76823 * 20 19 18 22 22 C 1.39893 * 119.99660 * 34.76255 * 20 19 18 23 23 N 1.30877 * 120.00114 * 355.56769 * 22 20 19 24 24 Si 1.86802 * 119.99721 * 175.56080 * 22 20 19 25 25 H 1.48499 * 109.47277 * 90.00335 * 24 22 20 26 26 H 1.48498 * 109.46972 * 210.00350 * 24 22 20 27 27 H 1.48500 * 109.46979 * 330.00133 * 24 22 20 28 28 C 1.40879 * 119.66647 * 359.74444 * 19 18 17 29 29 C 1.36369 * 119.83301 * 359.97438 * 28 19 18 30 30 H 1.09004 * 109.47461 * 299.99935 * 1 2 3 31 31 H 1.08995 * 109.47207 * 59.99949 * 1 2 3 32 32 H 1.09004 * 109.47146 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47143 * 175.00273 * 4 2 1 34 34 H 1.09005 * 109.47499 * 294.99772 * 4 2 1 35 35 H 1.09000 * 111.12899 * 270.24527 * 8 6 5 36 36 H 1.08998 * 111.12479 * 34.40842 * 8 6 5 37 37 H 1.09001 * 110.30580 * 204.64173 * 9 8 6 38 38 H 1.08996 * 110.31199 * 82.47415 * 9 8 6 39 39 H 1.09003 * 109.82720 * 238.76923 * 11 10 9 40 40 H 1.09001 * 109.83062 * 117.80095 * 11 10 9 41 41 H 0.97000 * 120.00439 * 265.00381 * 12 2 1 42 42 H 0.97006 * 119.99921 * 355.71660 * 15 13 12 43 43 H 1.07997 * 119.91445 * 0.03321 * 17 16 15 44 44 H 1.07995 * 120.08771 * 180.25729 * 18 17 16 45 45 H 0.97003 * 119.99790 * 179.97438 * 23 22 20 46 46 H 1.08000 * 120.08068 * 180.02562 * 28 19 18 47 47 H 1.07997 * 119.91755 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.4702 -2.0304 1.3095 6 6 1.8845 -2.7929 2.4448 7 1 2.0680 -2.1431 3.3005 8 6 0.8357 -3.8851 2.7896 9 6 1.7344 -4.9548 3.4597 10 8 2.9709 -4.9166 2.7296 11 6 3.1366 -3.6335 2.1149 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0183 -2.3570 14 8 1.8582 1.1615 -2.4116 15 7 2.5968 -0.6535 -3.4574 16 6 2.6452 0.0164 -4.6771 17 6 2.3854 -0.6758 -5.8598 18 6 2.4262 -0.0254 -7.0577 19 6 2.7425 1.3468 -7.0996 20 6 2.7918 2.0259 -8.3360 21 1 3.5121 2.8158 -8.4900 22 6 1.9076 1.6758 -9.3620 23 7 1.0940 0.6623 -9.2073 24 14 1.8880 2.6549 -10.9527 25 1 2.8488 2.0567 -11.9141 26 1 0.5223 2.6260 -11.5350 27 1 2.2774 4.0605 -10.6736 28 6 3.0091 2.0378 -5.9013 29 6 2.9589 1.3752 -4.7104 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.1263 -0.7994 1.2056 34 1 1.7517 -0.1583 2.1370 35 1 0.0888 -3.5064 3.4874 36 1 0.3651 -4.2765 1.8877 37 1 1.2760 -5.9402 3.3763 38 1 1.9052 -4.7036 4.5065 39 1 3.2298 -3.7500 1.0351 40 1 4.0257 -3.1446 2.5133 41 1 2.2490 -1.6318 -1.1526 42 1 2.8866 -1.5774 -3.3996 43 1 2.1470 -1.7286 -5.8264 44 1 2.2208 -0.5617 -7.9723 45 1 0.4807 0.4198 -9.9186 46 1 3.2519 3.0899 -5.9256 47 1 3.1634 1.9035 -3.7910 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122690763.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:29 Heat of formation + Delta-G solvation = -96.255200 kcal Electronic energy + Delta-G solvation = -27995.795660 eV Core-core repulsion = 23950.593899 eV Total energy + Delta-G solvation = -4045.201762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.25207 -39.84467 -38.12274 -37.27384 -35.24443 -34.23274 -32.92660 -31.86377 -30.71084 -29.48782 -29.15682 -28.50937 -26.72854 -24.86246 -23.02438 -22.17017 -22.00810 -21.15781 -20.55623 -20.04140 -18.05261 -17.81855 -17.21957 -17.02191 -16.77816 -15.92689 -15.57348 -15.37004 -15.09348 -14.87188 -14.60684 -14.27842 -13.91441 -13.78179 -13.59643 -13.35873 -12.96108 -12.69114 -12.63558 -12.45288 -12.07656 -12.05882 -12.00364 -11.68371 -11.63227 -11.30085 -11.20013 -11.12989 -11.07551 -10.93281 -10.67428 -10.09411 -10.03868 -9.95887 -9.49047 -9.40558 -9.19199 -8.89231 -8.81373 -7.47694 -6.77157 -6.55543 -4.27672 2.71948 2.92985 3.07762 3.12748 3.13523 3.17738 3.23011 3.49210 3.75547 3.92386 4.02775 4.35187 4.39896 4.53049 4.64083 4.67301 4.76425 4.80092 4.84106 4.96982 5.16256 5.21097 5.23139 5.31955 5.41296 5.43004 5.52435 5.67382 5.72139 5.95034 6.25631 6.29035 6.46890 6.49972 6.62755 6.72671 6.83189 6.90496 7.11135 7.22053 7.33415 7.47963 7.71539 7.92899 8.03952 8.15922 8.37304 8.53877 8.70208 8.99187 8.99443 9.15931 10.35676 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.027365 B = 0.001902 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.969753 B =14720.788071 C =15098.151008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.168 3.832 3 H 0.101 0.899 4 C 0.051 3.949 5 O -0.364 6.364 6 C 0.056 3.944 7 H 0.079 0.921 8 C -0.153 4.153 9 C 0.051 3.949 10 O -0.380 6.380 11 C 0.027 3.973 12 N -0.745 5.745 13 C 0.695 3.305 14 O -0.579 6.579 15 N -0.668 5.668 16 C 0.025 3.975 17 C -0.124 4.124 18 C -0.140 4.140 19 C 0.097 3.903 20 C -0.462 4.462 21 H 0.075 0.925 22 C 0.069 3.931 23 N -0.814 5.814 24 Si 0.915 3.085 25 H -0.271 1.271 26 H -0.279 1.279 27 H -0.264 1.264 28 C -0.204 4.204 29 C -0.087 4.087 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.395 0.605 42 H 0.391 0.609 43 H 0.090 0.910 44 H 0.132 0.868 45 H 0.277 0.723 46 H 0.095 0.905 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.162 -9.445 23.310 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.063 3.937 3 H 0.118 0.882 4 C -0.026 4.026 5 O -0.283 6.283 6 C -0.002 4.002 7 H 0.097 0.903 8 C -0.190 4.190 9 C -0.026 4.026 10 O -0.299 6.299 11 C -0.050 4.050 12 N -0.402 5.402 13 C 0.396 3.604 14 O -0.456 6.456 15 N -0.313 5.313 16 C -0.067 4.067 17 C -0.144 4.144 18 C -0.160 4.160 19 C 0.094 3.906 20 C -0.493 4.493 21 H 0.093 0.907 22 C -0.146 4.146 23 N -0.442 5.442 24 Si 0.740 3.260 25 H -0.196 1.196 26 H -0.204 1.204 27 H -0.188 1.188 28 C -0.224 4.224 29 C -0.107 4.107 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.229 0.771 42 H 0.224 0.776 43 H 0.108 0.892 44 H 0.149 0.851 45 H 0.087 0.913 46 H 0.113 0.887 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.289 -8.699 22.986 24.579 hybrid contribution 0.020 -0.225 -0.411 0.469 sum -0.268 -8.924 22.575 24.277 Atomic orbital electron populations 1.22106 0.94887 1.02628 1.02272 1.20768 0.94886 0.96358 0.81715 0.88159 1.22999 0.97657 0.83668 0.98288 1.87982 1.69472 1.26472 1.44343 1.23666 0.93957 0.93311 0.89301 0.90324 1.23312 0.98088 0.95146 1.02466 1.23358 0.83954 0.99846 0.95404 1.88451 1.39951 1.32757 1.68739 1.23689 0.97787 0.84134 0.99382 1.45127 1.72640 1.13553 1.08915 1.16033 0.78600 0.85421 0.80325 1.90901 1.56769 1.14088 1.83890 1.42123 1.66809 1.15292 1.07106 1.17079 1.14074 0.93113 0.82470 1.20298 1.03742 0.97974 0.92431 1.21173 1.03910 0.94667 0.96283 1.17719 0.89246 0.91336 0.92277 1.19467 1.16341 1.16886 0.96599 0.90710 1.25863 0.94408 0.94652 0.99639 1.69769 1.17765 1.23484 1.33139 0.86213 0.78068 0.80753 0.81003 1.19599 1.20372 1.18780 1.20803 1.11198 0.98221 0.92170 1.20420 0.99736 0.93048 0.97533 0.92249 0.91707 0.91776 0.92349 0.91538 0.89243 0.88977 0.89158 0.91923 0.90002 0.91164 0.77108 0.77563 0.89187 0.85068 0.91252 0.88685 0.87349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.29 37.16 0.35 -1.46 16 2 C 0.17 1.84 2.98 -67.94 -0.20 1.64 16 3 H 0.10 1.22 7.58 -51.93 -0.39 0.83 16 4 C 0.05 0.39 5.55 37.16 0.21 0.59 16 5 O -0.36 -2.96 8.93 -35.23 -0.31 -3.27 16 6 C 0.06 0.37 3.45 -24.79 -0.09 0.28 16 7 H 0.08 0.40 7.89 -51.93 -0.41 -0.01 16 8 C -0.15 -0.88 6.89 -24.48 -0.17 -1.05 16 9 C 0.05 0.30 7.78 38.19 0.30 0.60 16 10 O -0.38 -3.45 11.36 -35.23 -0.40 -3.85 16 11 C 0.03 0.20 7.58 37.88 0.29 0.49 16 12 N -0.75 -9.47 5.06 -58.68 -0.30 -9.77 16 13 C 0.70 12.39 8.36 -86.92 -0.73 11.67 16 14 O -0.58 -12.72 13.42 5.29 0.07 -12.65 16 15 N -0.67 -12.01 5.31 -14.10 -0.07 -12.08 16 16 C 0.03 0.57 6.31 -83.57 -0.53 0.05 16 17 C -0.12 -2.88 9.90 -39.79 -0.39 -3.28 16 18 C -0.14 -3.67 8.61 -39.26 -0.34 -4.01 16 19 C 0.10 2.64 5.55 -106.79 -0.59 2.05 16 20 C -0.46 -12.55 9.02 -37.86 -0.34 -12.89 16 21 H 0.07 1.95 7.85 -52.49 -0.41 1.54 16 22 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 23 N -0.81 -21.58 10.59 55.54 0.59 -20.99 16 24 Si 0.91 19.37 29.56 -169.99 -5.03 14.34 16 25 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 26 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 27 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 28 C -0.20 -5.27 9.74 -39.26 -0.38 -5.65 16 29 C -0.09 -2.14 8.61 -39.79 -0.34 -2.48 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.72 7.56 -51.93 -0.39 0.33 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.39 8.11 -51.93 -0.42 -0.03 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.65 8.05 -51.93 -0.42 0.24 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.40 4.14 8.40 -40.82 -0.34 3.80 16 42 H 0.39 5.57 8.83 -40.82 -0.36 5.21 16 43 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 44 H 0.13 3.54 6.13 -52.49 -0.32 3.22 16 45 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 46 H 0.09 2.33 8.06 -52.49 -0.42 1.91 16 47 H 0.11 2.63 6.22 -52.49 -0.33 2.30 16 LS Contribution 386.75 15.07 5.83 5.83 Total: -1.00 -32.27 386.75 -9.84 -42.11 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -7.16 Total: 12.11 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -3.06 Total: -11.77 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.22 Total: -42.84 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.64 Total: -19.78 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.27 -9.84 -42.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122690763.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.143 kcal (2) G-P(sol) polarization free energy of solvation -32.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds