Wall clock time and date at job start Tue Mar 31 2020 18:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47207 * 2 1 4 4 C 1.52999 * 109.47101 * 119.99905 * 2 1 3 5 5 O 1.42904 * 109.47334 * 54.99963 * 4 2 1 6 6 C 1.42897 * 114.00201 * 179.97438 * 5 4 2 7 7 H 1.09002 * 110.75268 * 32.01802 * 6 5 4 8 8 C 1.55300 * 110.84862 * 155.71341 * 6 5 4 9 9 C 1.54952 * 100.94188 * 152.32561 * 8 6 5 10 10 O 1.43648 * 105.13475 * 323.55477 * 9 8 6 11 11 C 1.43241 * 109.96976 * 24.43078 * 10 9 8 12 12 N 1.46493 * 109.47230 * 239.99863 * 2 1 3 13 13 C 1.34772 * 119.99910 * 84.99664 * 12 2 1 14 14 O 1.21585 * 120.00149 * 0.02562 * 13 12 2 15 15 N 1.34779 * 120.00186 * 179.97438 * 13 12 2 16 16 C 1.39240 * 120.00016 * 175.71005 * 15 13 12 17 17 C 1.39484 * 119.83340 * 215.01801 * 16 15 13 18 18 C 1.36370 * 120.16906 * 179.76097 * 17 16 15 19 19 C 1.40874 * 119.82952 * 0.51852 * 18 17 16 20 20 C 1.41153 * 120.16848 * 179.76001 * 19 18 17 21 21 H 1.08001 * 120.00134 * 214.76823 * 20 19 18 22 22 C 1.39893 * 119.99660 * 34.76255 * 20 19 18 23 23 N 1.30877 * 120.00114 * 355.56769 * 22 20 19 24 24 Si 1.86802 * 119.99721 * 175.56080 * 22 20 19 25 25 H 1.48499 * 109.47277 * 90.00335 * 24 22 20 26 26 H 1.48498 * 109.46972 * 210.00350 * 24 22 20 27 27 H 1.48500 * 109.46979 * 330.00133 * 24 22 20 28 28 C 1.40879 * 119.66647 * 359.74444 * 19 18 17 29 29 C 1.36369 * 119.83301 * 359.97438 * 28 19 18 30 30 H 1.09004 * 109.47461 * 299.99935 * 1 2 3 31 31 H 1.08995 * 109.47207 * 59.99949 * 1 2 3 32 32 H 1.09004 * 109.47146 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47143 * 175.00273 * 4 2 1 34 34 H 1.09005 * 109.47499 * 294.99772 * 4 2 1 35 35 H 1.09000 * 111.12899 * 270.24527 * 8 6 5 36 36 H 1.08998 * 111.12479 * 34.40842 * 8 6 5 37 37 H 1.09001 * 110.30580 * 204.64173 * 9 8 6 38 38 H 1.08996 * 110.31199 * 82.47415 * 9 8 6 39 39 H 1.09003 * 109.82720 * 238.76923 * 11 10 9 40 40 H 1.09001 * 109.83062 * 117.80095 * 11 10 9 41 41 H 0.97000 * 120.00439 * 265.00381 * 12 2 1 42 42 H 0.97006 * 119.99921 * 355.71660 * 15 13 12 43 43 H 1.07997 * 119.91445 * 0.03321 * 17 16 15 44 44 H 1.07995 * 120.08771 * 180.25729 * 18 17 16 45 45 H 0.97003 * 119.99790 * 179.97438 * 23 22 20 46 46 H 1.08000 * 120.08068 * 180.02562 * 28 19 18 47 47 H 1.07997 * 119.91755 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.4702 -2.0304 1.3095 6 6 1.8845 -2.7929 2.4448 7 1 2.0680 -2.1431 3.3005 8 6 0.8357 -3.8851 2.7896 9 6 1.7344 -4.9548 3.4597 10 8 2.9709 -4.9166 2.7296 11 6 3.1366 -3.6335 2.1149 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0183 -2.3570 14 8 1.8582 1.1615 -2.4116 15 7 2.5968 -0.6535 -3.4574 16 6 2.6452 0.0164 -4.6771 17 6 2.3854 -0.6758 -5.8598 18 6 2.4262 -0.0254 -7.0577 19 6 2.7425 1.3468 -7.0996 20 6 2.7918 2.0259 -8.3360 21 1 3.5121 2.8158 -8.4900 22 6 1.9076 1.6758 -9.3620 23 7 1.0940 0.6623 -9.2073 24 14 1.8880 2.6549 -10.9527 25 1 2.8488 2.0567 -11.9141 26 1 0.5223 2.6260 -11.5350 27 1 2.2774 4.0605 -10.6736 28 6 3.0091 2.0378 -5.9013 29 6 2.9589 1.3752 -4.7104 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.1263 -0.7994 1.2056 34 1 1.7517 -0.1583 2.1370 35 1 0.0888 -3.5064 3.4874 36 1 0.3651 -4.2765 1.8877 37 1 1.2760 -5.9402 3.3763 38 1 1.9052 -4.7036 4.5065 39 1 3.2298 -3.7500 1.0351 40 1 4.0257 -3.1446 2.5133 41 1 2.2490 -1.6318 -1.1526 42 1 2.8866 -1.5774 -3.3996 43 1 2.1470 -1.7286 -5.8264 44 1 2.2208 -0.5617 -7.9723 45 1 0.4807 0.4198 -9.9186 46 1 3.2519 3.0899 -5.9256 47 1 3.1634 1.9035 -3.7910 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122690763.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:27 Heat of formation + Delta-G solvation = -117.939093 kcal Electronic energy + Delta-G solvation = -27996.735945 eV Core-core repulsion = 23950.593899 eV Total energy + Delta-G solvation = -4046.142046 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.47448 -40.62720 -39.40954 -38.49507 -36.46510 -35.84200 -34.71706 -32.59317 -31.76968 -31.39121 -30.33110 -29.65462 -27.48343 -26.70364 -23.77136 -23.45233 -22.88501 -22.50720 -21.96261 -21.48857 -19.51353 -19.12604 -18.46819 -18.10652 -17.57150 -17.10578 -16.80636 -16.41285 -16.15024 -15.95394 -15.82749 -15.64003 -15.13845 -14.83211 -14.71689 -14.48834 -14.18304 -14.13107 -13.94724 -13.59647 -13.38335 -13.24146 -13.16325 -12.82709 -12.79544 -12.65973 -12.52095 -12.46158 -12.36731 -11.95176 -11.80650 -11.66282 -11.38212 -11.21473 -10.99462 -10.63942 -10.61825 -10.49516 -10.08288 -9.43947 -8.66666 -8.47757 -6.30063 0.86997 1.16929 1.40090 1.48001 1.54993 1.77082 2.22683 2.26665 2.43334 2.83629 3.01251 3.38143 3.46226 3.70782 3.76255 3.90284 4.01799 4.09089 4.20379 4.30485 4.41158 4.41707 4.48132 4.54575 4.61229 4.71183 4.75634 4.80715 4.84812 4.93903 4.94923 5.00460 5.07799 5.16000 5.17258 5.34665 5.36071 5.46712 5.58624 5.71788 5.84739 5.97668 6.05938 6.13706 6.16592 6.28673 6.42449 6.70879 6.99316 7.03767 7.17742 7.68683 8.44910 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.027365 B = 0.001902 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.969753 B =14720.788071 C =15098.151008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 H 0.088 0.912 4 C 0.060 3.940 5 O -0.377 6.377 6 C 0.057 3.943 7 H 0.100 0.900 8 C -0.149 4.149 9 C 0.046 3.954 10 O -0.407 6.407 11 C 0.023 3.977 12 N -0.723 5.723 13 C 0.694 3.306 14 O -0.622 6.622 15 N -0.661 5.661 16 C 0.043 3.957 17 C -0.122 4.122 18 C -0.158 4.158 19 C 0.064 3.936 20 C -0.498 4.498 21 H 0.072 0.928 22 C 0.026 3.974 23 N -0.843 5.843 24 Si 0.988 3.012 25 H -0.259 1.259 26 H -0.270 1.270 27 H -0.263 1.263 28 C -0.218 4.218 29 C -0.098 4.098 30 H 0.083 0.917 31 H 0.027 0.973 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.410 0.590 42 H 0.413 0.587 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.284 0.716 46 H 0.095 0.905 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.091 -10.362 25.179 27.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.057 3.943 3 H 0.106 0.894 4 C -0.017 4.017 5 O -0.296 6.296 6 C -0.001 4.001 7 H 0.118 0.882 8 C -0.187 4.187 9 C -0.030 4.030 10 O -0.328 6.328 11 C -0.053 4.053 12 N -0.380 5.380 13 C 0.394 3.606 14 O -0.502 6.502 15 N -0.309 5.309 16 C -0.051 4.051 17 C -0.143 4.143 18 C -0.178 4.178 19 C 0.061 3.939 20 C -0.529 4.529 21 H 0.090 0.910 22 C -0.186 4.186 23 N -0.472 5.472 24 Si 0.810 3.190 25 H -0.184 1.184 26 H -0.195 1.195 27 H -0.187 1.187 28 C -0.238 4.238 29 C -0.118 4.118 30 H 0.101 0.899 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.126 0.874 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.246 0.754 42 H 0.249 0.751 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.094 0.906 46 H 0.114 0.886 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.532 -9.686 24.924 26.745 hybrid contribution 0.084 -0.042 -0.778 0.784 sum -0.448 -9.728 24.145 26.035 Atomic orbital electron populations 1.22032 0.95008 1.02486 1.01654 1.20964 0.94757 0.96322 0.82220 0.89411 1.22906 0.98024 0.83664 0.97078 1.87957 1.69655 1.26640 1.45373 1.23767 0.93574 0.93425 0.89318 0.88211 1.23309 0.98217 0.94844 1.02318 1.23540 0.83049 1.00441 0.95943 1.88417 1.41373 1.33684 1.69284 1.23746 0.98807 0.83991 0.98804 1.44996 1.71089 1.14084 1.07805 1.16199 0.78189 0.84972 0.81195 1.90879 1.58455 1.16203 1.84700 1.41922 1.67052 1.16116 1.05806 1.17095 1.11270 0.92588 0.84140 1.20527 1.02665 0.99483 0.91592 1.21157 1.05120 0.94486 0.97012 1.18038 0.90620 0.92241 0.92967 1.19698 1.17650 1.17815 0.97738 0.90978 1.26741 0.93446 0.95548 1.02817 1.69836 1.18236 1.24634 1.34445 0.85104 0.78519 0.78959 0.76466 1.18402 1.19467 1.18694 1.20926 1.11803 0.98525 0.92561 1.20529 1.00199 0.94142 0.96940 0.89859 0.95337 0.91562 0.91330 0.88930 0.87440 0.90274 0.88566 0.90357 0.91081 0.90276 0.75399 0.75073 0.85968 0.86346 0.90572 0.88633 0.87306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.29 71.98 0.67 -2.56 16 2 C 0.16 3.24 2.98 44.99 0.13 3.38 16 3 H 0.09 2.04 7.58 -2.39 -0.02 2.02 16 4 C 0.06 0.72 5.55 71.98 0.40 1.12 16 5 O -0.38 -5.00 8.93 -148.98 -1.33 -6.34 16 6 C 0.06 0.58 3.45 31.85 0.11 0.69 16 7 H 0.10 0.61 7.89 -2.39 -0.02 0.60 16 8 C -0.15 -1.36 6.89 32.05 0.22 -1.14 16 9 C 0.05 0.46 7.78 72.65 0.57 1.02 16 10 O -0.41 -6.81 11.36 -148.98 -1.69 -8.50 16 11 C 0.02 0.31 7.58 72.45 0.55 0.85 16 12 N -0.72 -17.11 5.06 -457.83 -2.32 -19.42 16 13 C 0.69 24.05 8.36 179.05 1.50 25.54 16 14 O -0.62 -27.39 13.42 -3.98 -0.05 -27.45 16 15 N -0.66 -22.83 5.31 -316.78 -1.68 -24.51 16 16 C 0.04 1.94 6.31 38.57 0.24 2.19 16 17 C -0.12 -5.64 9.90 22.13 0.22 -5.42 16 18 C -0.16 -8.44 8.61 22.48 0.19 -8.25 16 19 C 0.06 3.61 5.55 -21.27 -0.12 3.49 16 20 C -0.50 -28.01 9.02 23.39 0.21 -27.79 16 21 H 0.07 3.92 7.85 -2.91 -0.02 3.89 16 22 C 0.03 1.36 5.42 85.24 0.46 1.82 16 23 N -0.84 -45.55 10.59 21.82 0.23 -45.32 16 24 Si 0.99 40.04 29.56 68.60 2.03 42.07 16 25 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 26 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 27 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 28 C -0.22 -11.68 9.74 22.48 0.22 -11.46 16 29 C -0.10 -4.86 8.61 22.13 0.19 -4.67 16 30 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 1.36 7.56 -2.38 -0.02 1.34 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 34 H 0.09 0.70 8.11 -2.38 -0.02 0.68 16 35 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.07 1.04 8.05 -2.39 -0.02 1.02 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.41 7.57 8.40 -92.71 -0.78 6.79 16 42 H 0.41 10.75 8.83 -92.70 -0.82 9.93 16 43 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 44 H 0.12 6.59 6.13 -2.91 -0.02 6.57 16 45 H 0.28 13.92 8.30 -92.71 -0.77 13.16 16 46 H 0.10 4.92 8.06 -2.91 -0.02 4.89 16 47 H 0.11 5.38 6.22 -2.91 -0.02 5.36 16 Total: -1.00 -72.43 386.75 0.35 -72.09 By element: Atomic # 1 Polarization: 39.18 SS G_CDS: -0.60 Total: 38.58 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: 5.76 Total: -21.18 kcal Atomic # 7 Polarization: -85.49 SS G_CDS: -3.77 Total: -89.26 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -3.08 Total: -42.28 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -72.43 0.35 -72.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122690763.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.854 kcal (2) G-P(sol) polarization free energy of solvation -72.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds