Wall clock time and date at job start Tue Mar 31 2020 18:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47234 * 2 1 4 4 C 1.53005 * 109.47307 * 240.00204 * 2 1 3 5 5 O 1.42898 * 109.46546 * 304.99874 * 4 2 1 6 6 C 1.42906 * 113.99798 * 180.02562 * 5 4 2 7 7 H 1.08998 * 110.74976 * 32.01317 * 6 5 4 8 8 C 1.55302 * 110.85205 * 155.71336 * 6 5 4 9 9 C 1.54943 * 100.94444 * 152.32104 * 8 6 5 10 10 O 1.43648 * 105.13538 * 323.55639 * 9 8 6 11 11 C 1.43237 * 109.97496 * 24.42603 * 10 9 8 12 12 N 1.46495 * 109.47591 * 119.99951 * 2 1 3 13 13 C 1.34780 * 120.00252 * 275.00152 * 12 2 1 14 14 O 1.21589 * 119.99684 * 0.02562 * 13 12 2 15 15 N 1.34774 * 120.00489 * 179.97438 * 13 12 2 16 16 C 1.39237 * 120.00050 * 184.03045 * 15 13 12 17 17 C 1.39476 * 119.83728 * 324.49870 * 16 15 13 18 18 C 1.36374 * 120.17179 * 179.72077 * 17 16 15 19 19 C 1.40873 * 119.82634 * 0.56946 * 18 17 16 20 20 C 1.41159 * 120.16189 * 179.72376 * 19 18 17 21 21 H 1.07993 * 119.99610 * 214.76512 * 20 19 18 22 22 C 1.39886 * 120.00143 * 34.76937 * 20 19 18 23 23 N 1.30885 * 120.00077 * 355.55138 * 22 20 19 24 24 Si 1.86802 * 120.00220 * 175.55872 * 22 20 19 25 25 H 1.48504 * 109.46977 * 89.99304 * 24 22 20 26 26 H 1.48490 * 109.47208 * 209.99741 * 24 22 20 27 27 H 1.48503 * 109.46649 * 329.99987 * 24 22 20 28 28 C 1.40861 * 119.66941 * 359.70120 * 19 18 17 29 29 C 1.36369 * 119.83474 * 0.02562 * 28 19 18 30 30 H 1.08994 * 109.47008 * 300.00020 * 1 2 3 31 31 H 1.09001 * 109.47221 * 60.00083 * 1 2 3 32 32 H 1.08995 * 109.46828 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46994 * 64.99582 * 4 2 1 34 34 H 1.08994 * 109.47310 * 184.99887 * 4 2 1 35 35 H 1.09002 * 111.12574 * 270.24413 * 8 6 5 36 36 H 1.08999 * 111.11930 * 34.40170 * 8 6 5 37 37 H 1.08999 * 110.30927 * 204.64110 * 9 8 6 38 38 H 1.09000 * 110.30824 * 82.46758 * 9 8 6 39 39 H 1.08997 * 109.83248 * 238.77694 * 11 10 9 40 40 H 1.09002 * 109.83089 * 117.79899 * 11 10 9 41 41 H 0.96994 * 120.00158 * 95.00006 * 12 2 1 42 42 H 0.97001 * 119.99657 * 4.30480 * 15 13 12 43 43 H 1.08005 * 119.91226 * 0.02562 * 17 16 15 44 44 H 1.08003 * 120.08888 * 180.29509 * 18 17 16 45 45 H 0.97003 * 120.00070 * 180.02562 * 23 22 20 46 46 H 1.08001 * 120.08302 * 180.02562 * 28 19 18 47 47 H 1.08005 * 119.92381 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 1.4703 -2.0303 -1.3094 6 6 1.8846 -2.7929 -2.4447 7 1 2.9025 -2.5323 -2.7345 8 6 1.7576 -4.3151 -2.1644 9 6 1.5317 -4.8603 -3.5971 10 8 0.7248 -3.8690 -4.2527 11 6 0.9094 -2.5947 -3.6252 12 7 2.0184 -0.6906 1.1961 13 6 2.1472 -0.0182 2.3571 14 8 1.8575 1.1614 2.4118 15 7 2.5961 -0.6536 3.4577 16 6 2.6497 0.0181 4.6761 17 6 2.9738 1.3743 4.7073 18 6 3.0227 2.0402 5.8963 19 6 2.7566 1.3519 7.0963 20 6 2.8110 2.0329 8.3316 21 1 3.1639 1.5215 9.2149 22 6 2.4076 3.3699 8.4116 23 7 2.0627 4.0155 7.3265 24 14 2.3615 4.2343 10.0670 25 1 3.6761 4.8740 10.3281 26 1 1.2997 5.2722 10.0540 27 1 2.0724 3.2435 11.1347 28 6 2.4355 -0.0191 7.0573 29 6 2.3850 -0.6702 5.8602 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7516 -0.1583 -2.1370 34 1 3.1263 -0.7994 -1.2056 35 1 2.6760 -4.7131 -1.7328 36 1 0.9011 -4.5265 -1.5241 37 1 1.0044 -5.8135 -3.5604 38 1 2.4850 -4.9739 -4.1132 39 1 -0.0463 -2.2220 -3.2568 40 1 1.3325 -1.8885 -4.3397 41 1 2.2492 -1.6316 1.1526 42 1 2.8855 -1.5776 3.4000 43 1 3.1818 1.8996 3.7868 44 1 3.2692 3.0915 5.9185 45 1 1.7834 4.9428 7.3819 46 1 2.2299 -0.5532 7.9732 47 1 2.1393 -1.7215 5.8286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122690947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:33 Heat of formation + Delta-G solvation = -95.776462 kcal Electronic energy + Delta-G solvation = -27968.727622 eV Core-core repulsion = 23923.546620 eV Total energy + Delta-G solvation = -4045.181002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.24236 -39.83802 -38.11748 -37.27036 -35.22753 -34.23685 -32.90641 -31.87336 -30.68220 -29.41537 -29.19400 -28.57229 -26.69040 -24.86226 -23.05844 -22.07046 -22.00468 -21.18439 -20.61716 -19.98573 -18.05218 -17.79375 -17.23006 -17.11742 -16.65928 -15.94349 -15.66098 -15.19088 -15.15298 -14.78112 -14.53081 -14.49821 -13.91415 -13.79655 -13.55123 -13.15375 -12.93435 -12.76158 -12.67273 -12.49884 -12.20454 -12.01019 -11.93950 -11.71465 -11.55901 -11.38863 -11.19424 -11.12956 -11.05882 -10.86941 -10.44439 -10.09159 -9.97601 -9.92584 -9.83109 -9.53979 -9.06602 -8.84403 -8.69889 -7.45219 -6.80407 -6.53123 -4.26825 2.73932 2.94078 3.07918 3.11700 3.14200 3.16163 3.23359 3.49101 3.76931 3.92269 4.03456 4.36276 4.40760 4.54229 4.64379 4.67072 4.77888 4.80443 4.85779 5.00543 5.15797 5.20703 5.24226 5.33589 5.40276 5.44619 5.53678 5.69692 5.73182 5.97432 6.19344 6.31457 6.43540 6.46112 6.63429 6.73826 6.88172 6.92060 7.11058 7.21769 7.35178 7.46122 7.71460 7.90691 8.08926 8.15653 8.36480 8.54708 8.74150 8.99778 9.00827 9.17615 10.37870 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.034244 B = 0.001863 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.460322 B =15025.437247 C =15545.743934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.168 3.832 3 H 0.101 0.899 4 C 0.051 3.949 5 O -0.364 6.364 6 C 0.056 3.944 7 H 0.079 0.921 8 C -0.153 4.153 9 C 0.051 3.949 10 O -0.381 6.381 11 C 0.027 3.973 12 N -0.745 5.745 13 C 0.695 3.305 14 O -0.575 6.575 15 N -0.669 5.669 16 C 0.026 3.974 17 C -0.094 4.094 18 C -0.143 4.143 19 C 0.097 3.903 20 C -0.464 4.464 21 H 0.074 0.926 22 C 0.069 3.931 23 N -0.809 5.809 24 Si 0.914 3.086 25 H -0.271 1.271 26 H -0.278 1.278 27 H -0.264 1.264 28 C -0.203 4.203 29 C -0.117 4.117 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.395 0.605 42 H 0.390 0.610 43 H 0.108 0.892 44 H 0.130 0.870 45 H 0.277 0.723 46 H 0.096 0.904 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.960 -13.539 -20.228 24.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.063 3.937 3 H 0.119 0.881 4 C -0.026 4.026 5 O -0.283 6.283 6 C -0.003 4.003 7 H 0.097 0.903 8 C -0.191 4.191 9 C -0.025 4.025 10 O -0.300 6.300 11 C -0.050 4.050 12 N -0.402 5.402 13 C 0.395 3.605 14 O -0.452 6.452 15 N -0.315 5.315 16 C -0.066 4.066 17 C -0.115 4.115 18 C -0.163 4.163 19 C 0.095 3.905 20 C -0.495 4.495 21 H 0.093 0.907 22 C -0.146 4.146 23 N -0.436 5.436 24 Si 0.739 3.261 25 H -0.196 1.196 26 H -0.204 1.204 27 H -0.188 1.188 28 C -0.223 4.223 29 C -0.138 4.138 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.228 0.772 42 H 0.223 0.777 43 H 0.126 0.874 44 H 0.148 0.852 45 H 0.088 0.912 46 H 0.114 0.886 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.325 -12.297 -20.300 23.736 hybrid contribution 0.351 -0.344 0.607 0.781 sum 0.676 -12.641 -19.693 23.411 Atomic orbital electron populations 1.22108 0.94874 1.02597 1.02344 1.20774 0.94896 0.96393 0.81679 0.88119 1.22998 0.97535 0.83797 0.98263 1.87980 1.70007 1.26487 1.43805 1.23670 0.97597 0.92227 0.86777 0.90307 1.23316 1.04440 0.93169 0.98128 1.23357 0.95568 0.92777 0.90848 1.88441 1.67013 1.17743 1.56805 1.23683 1.00558 0.86330 0.94391 1.45123 1.72686 1.13514 1.08921 1.16040 0.78678 0.85445 0.80316 1.90934 1.56427 1.14011 1.83786 1.42105 1.67060 1.15121 1.07195 1.17085 1.14093 0.93117 0.82326 1.20667 0.99917 0.92692 0.98194 1.21309 1.03083 1.00807 0.91080 1.17720 0.88459 0.90707 0.93661 1.19447 1.39133 0.95496 0.95435 0.90746 1.25878 0.93299 0.97332 0.98135 1.69798 1.34171 1.10914 1.28759 0.86222 0.78523 0.79167 0.82163 1.19595 1.20360 1.18819 1.20664 1.10016 0.96250 0.95349 1.20054 1.03824 0.97647 0.92257 0.91682 0.92202 0.91806 0.91611 0.92269 0.89165 0.88986 0.89162 0.91888 0.89984 0.91190 0.77167 0.77702 0.87403 0.85210 0.91171 0.88608 0.89263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.29 37.16 0.35 -1.52 16 2 C 0.17 1.89 2.98 -67.93 -0.20 1.68 16 3 H 0.10 1.28 7.58 -51.93 -0.39 0.88 16 4 C 0.05 0.40 5.55 37.16 0.21 0.61 16 5 O -0.36 -2.99 8.93 -35.23 -0.31 -3.30 16 6 C 0.06 0.37 3.45 -24.78 -0.09 0.28 16 7 H 0.08 0.42 7.89 -51.93 -0.41 0.01 16 8 C -0.15 -0.89 6.89 -24.49 -0.17 -1.06 16 9 C 0.05 0.30 7.78 38.18 0.30 0.60 16 10 O -0.38 -3.41 11.36 -35.23 -0.40 -3.81 16 11 C 0.03 0.20 7.58 37.89 0.29 0.49 16 12 N -0.75 -9.52 5.06 -58.68 -0.30 -9.81 16 13 C 0.69 12.50 8.36 -86.92 -0.73 11.77 16 14 O -0.57 -12.99 13.44 5.29 0.07 -12.92 16 15 N -0.67 -11.93 5.31 -14.10 -0.07 -12.00 16 16 C 0.03 0.60 6.30 -83.57 -0.53 0.07 16 17 C -0.09 -2.39 8.61 -39.79 -0.34 -2.74 16 18 C -0.14 -3.90 8.62 -39.26 -0.34 -4.23 16 19 C 0.10 2.64 5.55 -106.80 -0.59 2.05 16 20 C -0.46 -12.58 9.02 -37.86 -0.34 -12.92 16 21 H 0.07 1.92 7.85 -52.49 -0.41 1.51 16 22 C 0.07 1.79 5.42 -17.34 -0.09 1.69 16 23 N -0.81 -21.97 10.59 55.54 0.59 -21.39 16 24 Si 0.91 19.43 29.56 -169.99 -5.03 14.41 16 25 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 26 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 27 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 28 C -0.20 -4.97 9.74 -39.26 -0.38 -5.36 16 29 C -0.12 -2.60 9.90 -39.79 -0.39 -3.00 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.73 7.56 -51.93 -0.39 0.34 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.42 8.11 -51.93 -0.42 0.00 16 35 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.65 8.05 -51.93 -0.42 0.23 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.39 4.06 8.40 -40.82 -0.34 3.72 16 42 H 0.39 5.39 8.83 -40.82 -0.36 5.02 16 43 H 0.11 2.76 6.24 -52.48 -0.33 2.43 16 44 H 0.13 3.71 6.13 -52.48 -0.32 3.38 16 45 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 46 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 47 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 386.79 15.07 5.83 5.83 Total: -1.00 -32.62 386.79 -9.84 -42.47 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -7.16 Total: 12.09 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -3.06 Total: -11.57 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.22 Total: -43.20 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.64 Total: -20.03 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.62 -9.84 -42.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122690947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.311 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds