Wall clock time and date at job start Tue Mar 31 2020 18:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47234 * 2 1 4 4 C 1.53005 * 109.47307 * 240.00204 * 2 1 3 5 5 O 1.42898 * 109.46546 * 304.99874 * 4 2 1 6 6 C 1.42906 * 113.99798 * 180.02562 * 5 4 2 7 7 H 1.08998 * 110.74976 * 32.01317 * 6 5 4 8 8 C 1.55302 * 110.85205 * 155.71336 * 6 5 4 9 9 C 1.54943 * 100.94444 * 152.32104 * 8 6 5 10 10 O 1.43648 * 105.13538 * 323.55639 * 9 8 6 11 11 C 1.43237 * 109.97496 * 24.42603 * 10 9 8 12 12 N 1.46495 * 109.47591 * 119.99951 * 2 1 3 13 13 C 1.34780 * 120.00252 * 275.00152 * 12 2 1 14 14 O 1.21589 * 119.99684 * 0.02562 * 13 12 2 15 15 N 1.34774 * 120.00489 * 179.97438 * 13 12 2 16 16 C 1.39237 * 120.00050 * 184.03045 * 15 13 12 17 17 C 1.39476 * 119.83728 * 324.49870 * 16 15 13 18 18 C 1.36374 * 120.17179 * 179.72077 * 17 16 15 19 19 C 1.40873 * 119.82634 * 0.56946 * 18 17 16 20 20 C 1.41159 * 120.16189 * 179.72376 * 19 18 17 21 21 H 1.07993 * 119.99610 * 214.76512 * 20 19 18 22 22 C 1.39886 * 120.00143 * 34.76937 * 20 19 18 23 23 N 1.30885 * 120.00077 * 355.55138 * 22 20 19 24 24 Si 1.86802 * 120.00220 * 175.55872 * 22 20 19 25 25 H 1.48504 * 109.46977 * 89.99304 * 24 22 20 26 26 H 1.48490 * 109.47208 * 209.99741 * 24 22 20 27 27 H 1.48503 * 109.46649 * 329.99987 * 24 22 20 28 28 C 1.40861 * 119.66941 * 359.70120 * 19 18 17 29 29 C 1.36369 * 119.83474 * 0.02562 * 28 19 18 30 30 H 1.08994 * 109.47008 * 300.00020 * 1 2 3 31 31 H 1.09001 * 109.47221 * 60.00083 * 1 2 3 32 32 H 1.08995 * 109.46828 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46994 * 64.99582 * 4 2 1 34 34 H 1.08994 * 109.47310 * 184.99887 * 4 2 1 35 35 H 1.09002 * 111.12574 * 270.24413 * 8 6 5 36 36 H 1.08999 * 111.11930 * 34.40170 * 8 6 5 37 37 H 1.08999 * 110.30927 * 204.64110 * 9 8 6 38 38 H 1.09000 * 110.30824 * 82.46758 * 9 8 6 39 39 H 1.08997 * 109.83248 * 238.77694 * 11 10 9 40 40 H 1.09002 * 109.83089 * 117.79899 * 11 10 9 41 41 H 0.96994 * 120.00158 * 95.00006 * 12 2 1 42 42 H 0.97001 * 119.99657 * 4.30480 * 15 13 12 43 43 H 1.08005 * 119.91226 * 0.02562 * 17 16 15 44 44 H 1.08003 * 120.08888 * 180.29509 * 18 17 16 45 45 H 0.97003 * 120.00070 * 180.02562 * 23 22 20 46 46 H 1.08001 * 120.08302 * 180.02562 * 28 19 18 47 47 H 1.08005 * 119.92381 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 1.4703 -2.0303 -1.3094 6 6 1.8846 -2.7929 -2.4447 7 1 2.9025 -2.5323 -2.7345 8 6 1.7576 -4.3151 -2.1644 9 6 1.5317 -4.8603 -3.5971 10 8 0.7248 -3.8690 -4.2527 11 6 0.9094 -2.5947 -3.6252 12 7 2.0184 -0.6906 1.1961 13 6 2.1472 -0.0182 2.3571 14 8 1.8575 1.1614 2.4118 15 7 2.5961 -0.6536 3.4577 16 6 2.6497 0.0181 4.6761 17 6 2.9738 1.3743 4.7073 18 6 3.0227 2.0402 5.8963 19 6 2.7566 1.3519 7.0963 20 6 2.8110 2.0329 8.3316 21 1 3.1639 1.5215 9.2149 22 6 2.4076 3.3699 8.4116 23 7 2.0627 4.0155 7.3265 24 14 2.3615 4.2343 10.0670 25 1 3.6761 4.8740 10.3281 26 1 1.2997 5.2722 10.0540 27 1 2.0724 3.2435 11.1347 28 6 2.4355 -0.0191 7.0573 29 6 2.3850 -0.6702 5.8602 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7516 -0.1583 -2.1370 34 1 3.1263 -0.7994 -1.2056 35 1 2.6760 -4.7131 -1.7328 36 1 0.9011 -4.5265 -1.5241 37 1 1.0044 -5.8135 -3.5604 38 1 2.4850 -4.9739 -4.1132 39 1 -0.0463 -2.2220 -3.2568 40 1 1.3325 -1.8885 -4.3397 41 1 2.2492 -1.6316 1.1526 42 1 2.8855 -1.5776 3.4000 43 1 3.1818 1.8996 3.7868 44 1 3.2692 3.0915 5.9185 45 1 1.7834 4.9428 7.3819 46 1 2.2299 -0.5532 7.9732 47 1 2.1393 -1.7215 5.8286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122690947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:32 Heat of formation + Delta-G solvation = -118.144542 kcal Electronic energy + Delta-G solvation = -27969.697575 eV Core-core repulsion = 23923.546620 eV Total energy + Delta-G solvation = -4046.150955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.46674 -40.62757 -39.40160 -38.49450 -36.45692 -35.86297 -34.69768 -32.61090 -31.75298 -31.33736 -30.35234 -29.69400 -27.47365 -26.70026 -23.76116 -23.37586 -23.00058 -22.50469 -21.91763 -21.48913 -19.45372 -19.18483 -18.50801 -18.06546 -17.60712 -17.09960 -16.68675 -16.47864 -16.23100 -15.84801 -15.70021 -15.53504 -15.42001 -14.92019 -14.69405 -14.48234 -14.18327 -13.94408 -13.92940 -13.62398 -13.37638 -13.28025 -13.26829 -12.85251 -12.83957 -12.63628 -12.42790 -12.32237 -12.28598 -11.96613 -11.76529 -11.68821 -11.65792 -11.28498 -10.90248 -10.63217 -10.51714 -10.49266 -10.08377 -9.41069 -8.67637 -8.46388 -6.29218 0.89667 1.16711 1.39536 1.48127 1.55196 1.77425 2.22725 2.26878 2.42828 2.85802 3.00937 3.39296 3.46717 3.72836 3.76832 3.89204 4.01483 4.08139 4.20559 4.30742 4.40978 4.46501 4.47973 4.51511 4.58125 4.71439 4.75597 4.80222 4.83210 4.95526 4.96391 5.04327 5.08044 5.15114 5.19970 5.33139 5.37081 5.46503 5.58323 5.73654 5.83889 5.97372 6.12860 6.14969 6.18831 6.24153 6.41428 6.74971 6.99554 7.06649 7.20403 7.71166 8.46522 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.034244 B = 0.001863 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.460322 B =15025.437247 C =15545.743934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.163 3.837 3 H 0.085 0.915 4 C 0.061 3.939 5 O -0.376 6.376 6 C 0.056 3.944 7 H 0.098 0.902 8 C -0.150 4.150 9 C 0.046 3.954 10 O -0.408 6.408 11 C 0.024 3.976 12 N -0.721 5.721 13 C 0.692 3.308 14 O -0.624 6.624 15 N -0.659 5.659 16 C 0.043 3.957 17 C -0.109 4.109 18 C -0.167 4.167 19 C 0.062 3.938 20 C -0.497 4.497 21 H 0.079 0.921 22 C 0.020 3.980 23 N -0.849 5.849 24 Si 0.990 3.010 25 H -0.262 1.262 26 H -0.274 1.274 27 H -0.256 1.256 28 C -0.207 4.207 29 C -0.111 4.111 30 H 0.027 0.973 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.412 0.588 42 H 0.414 0.586 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.281 0.719 46 H 0.112 0.888 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.344 -15.897 -21.033 26.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.058 3.942 3 H 0.103 0.897 4 C -0.016 4.016 5 O -0.295 6.295 6 C -0.002 4.002 7 H 0.116 0.884 8 C -0.187 4.187 9 C -0.030 4.030 10 O -0.328 6.328 11 C -0.053 4.053 12 N -0.378 5.378 13 C 0.393 3.607 14 O -0.504 6.504 15 N -0.308 5.308 16 C -0.051 4.051 17 C -0.129 4.129 18 C -0.187 4.187 19 C 0.059 3.941 20 C -0.528 4.528 21 H 0.097 0.903 22 C -0.190 4.190 23 N -0.477 5.477 24 Si 0.811 3.189 25 H -0.187 1.187 26 H -0.198 1.198 27 H -0.179 1.179 28 C -0.227 4.227 29 C -0.131 4.131 30 H 0.046 0.954 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.126 0.874 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.248 0.752 42 H 0.251 0.749 43 H 0.115 0.885 44 H 0.122 0.878 45 H 0.091 0.909 46 H 0.130 0.870 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.724 -14.745 -21.161 25.802 hybrid contribution 0.206 0.247 0.645 0.720 sum 0.930 -14.499 -20.517 25.140 Atomic orbital electron populations 1.22032 0.95141 1.02492 1.01548 1.20929 0.94660 0.96264 0.82392 0.89743 1.22878 0.98111 0.83819 0.96751 1.87954 1.70413 1.26550 1.44615 1.23777 0.98192 0.92346 0.85867 0.88409 1.23315 1.04808 0.92736 0.97856 1.23537 0.96026 0.92477 0.90930 1.88408 1.67959 1.18745 1.57668 1.23737 1.00390 0.86097 0.95039 1.44941 1.71100 1.14115 1.07638 1.16242 0.78266 0.84922 0.81317 1.90918 1.58364 1.16482 1.84683 1.41868 1.67140 1.15995 1.05758 1.17118 1.11356 0.92201 0.84447 1.20674 1.00879 0.94355 0.97009 1.21173 1.05123 1.00047 0.92347 1.18065 0.89889 0.92355 0.93755 1.19738 1.40669 0.96691 0.95676 0.90287 1.26847 0.92330 0.97741 1.02120 1.69924 1.35277 1.11382 1.31120 0.85076 0.78819 0.77889 0.77076 1.18674 1.19848 1.17938 1.20933 1.09342 0.95328 0.97133 1.20410 1.02121 0.99656 0.90948 0.95356 0.90141 0.91430 0.89559 0.90807 0.87416 0.90133 0.88497 0.90427 0.91128 0.90094 0.75169 0.74855 0.88488 0.87783 0.90859 0.86975 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.29 71.98 0.67 -2.76 16 2 C 0.16 3.41 2.98 44.99 0.13 3.54 16 3 H 0.08 2.11 7.58 -2.39 -0.02 2.09 16 4 C 0.06 0.78 5.55 71.98 0.40 1.18 16 5 O -0.38 -5.06 8.93 -148.98 -1.33 -6.39 16 6 C 0.06 0.58 3.45 31.86 0.11 0.69 16 7 H 0.10 0.66 7.89 -2.39 -0.02 0.64 16 8 C -0.15 -1.35 6.89 32.05 0.22 -1.13 16 9 C 0.05 0.45 7.78 72.65 0.56 1.02 16 10 O -0.41 -6.69 11.36 -148.98 -1.69 -8.38 16 11 C 0.02 0.31 7.58 72.45 0.55 0.86 16 12 N -0.72 -17.06 5.06 -457.81 -2.32 -19.37 16 13 C 0.69 24.31 8.36 179.05 1.50 25.81 16 14 O -0.62 -28.79 13.44 -3.99 -0.05 -28.85 16 15 N -0.66 -22.26 5.31 -316.78 -1.68 -23.95 16 16 C 0.04 1.90 6.30 38.57 0.24 2.14 16 17 C -0.11 -5.69 8.61 22.13 0.19 -5.50 16 18 C -0.17 -9.56 8.62 22.48 0.19 -9.37 16 19 C 0.06 3.46 5.55 -21.28 -0.12 3.34 16 20 C -0.50 -27.70 9.02 23.39 0.21 -27.49 16 21 H 0.08 4.15 7.85 -2.91 -0.02 4.13 16 22 C 0.02 1.10 5.42 85.23 0.46 1.56 16 23 N -0.85 -48.21 10.59 21.82 0.23 -47.98 16 24 Si 0.99 40.49 29.56 68.60 2.03 42.52 16 25 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 26 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 27 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 28 C -0.21 -10.06 9.74 22.48 0.22 -9.84 16 29 C -0.11 -4.69 9.90 22.14 0.22 -4.48 16 30 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.45 7.56 -2.39 -0.02 1.43 16 33 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.77 8.11 -2.39 -0.02 0.75 16 35 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.07 1.03 8.05 -2.39 -0.02 1.01 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.41 7.17 8.40 -92.71 -0.78 6.39 16 42 H 0.41 10.01 8.83 -92.71 -0.82 9.19 16 43 H 0.10 5.21 6.24 -2.91 -0.02 5.20 16 44 H 0.10 6.39 6.13 -2.91 -0.02 6.38 16 45 H 0.28 14.65 8.30 -92.71 -0.77 13.88 16 46 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 47 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -75.11 386.79 0.35 -74.77 By element: Atomic # 1 Polarization: 38.65 SS G_CDS: -0.60 Total: 38.05 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: 5.76 Total: -20.42 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -3.77 Total: -91.30 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -3.08 Total: -43.61 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -75.11 0.35 -74.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122690947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.378 kcal (2) G-P(sol) polarization free energy of solvation -75.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds