Wall clock time and date at job start Tue Mar 31 2020 18:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35980 * 117.00045 * 2 1 4 4 C 1.38699 * 119.99819 * 180.02562 * 3 2 1 5 5 C 1.38129 * 119.99952 * 180.02562 * 4 3 2 6 6 C 1.38696 * 120.00003 * 359.97438 * 5 4 3 7 7 O 1.35986 * 119.99871 * 179.97438 * 6 5 4 8 8 C 1.42897 * 116.99974 * 354.01515 * 7 6 5 9 9 H 1.09006 * 109.47672 * 325.10620 * 8 7 6 10 10 C 1.53001 * 109.47378 * 85.10725 * 8 7 6 11 11 C 1.50700 * 109.47454 * 205.10585 * 8 7 6 12 12 O 1.21284 * 119.99764 * 352.29294 * 11 8 7 13 13 N 1.34779 * 120.00440 * 172.28957 * 11 8 7 14 14 C 1.46960 * 120.59421 * 176.29761 * 13 11 8 15 15 C 1.53371 * 108.63758 * 125.04502 * 14 13 11 16 16 N 1.46966 * 108.63061 * 49.42590 * 15 14 13 17 17 C 1.36938 * 120.59851 * 124.75388 * 16 15 14 18 18 H 1.07998 * 120.00604 * 202.33822 * 17 16 15 19 19 C 1.38818 * 119.99684 * 22.33440 * 17 16 15 20 20 N 1.31611 * 119.99831 * 218.90417 * 19 17 16 21 21 Si 1.86798 * 119.99848 * 38.90408 * 19 17 16 22 22 H 1.48491 * 109.47446 * 90.02841 * 21 19 17 23 23 H 1.48504 * 109.46878 * 210.02573 * 21 19 17 24 24 H 1.48500 * 109.47229 * 330.02416 * 21 19 17 25 25 C 1.46964 * 118.81198 * 304.76902 * 16 15 14 26 26 C 1.46959 * 120.59131 * 356.57280 * 13 11 8 27 27 C 1.38690 * 120.00059 * 0.25652 * 6 5 4 28 28 C 1.38130 * 120.00143 * 359.48767 * 27 6 5 29 29 H 1.08994 * 109.46907 * 300.01075 * 1 2 3 30 30 H 1.09005 * 109.46668 * 60.00593 * 1 2 3 31 31 H 1.08997 * 109.47075 * 180.02562 * 1 2 3 32 32 H 1.08002 * 120.00176 * 359.97438 * 4 3 2 33 33 H 1.08008 * 119.99915 * 179.97438 * 5 4 3 34 34 H 1.09005 * 109.46928 * 65.44174 * 10 8 7 35 35 H 1.08992 * 109.47456 * 185.44685 * 10 8 7 36 36 H 1.09006 * 109.46926 * 305.44764 * 10 8 7 37 37 H 1.08999 * 109.60866 * 244.79376 * 14 13 11 38 38 H 1.09009 * 109.61290 * 5.30188 * 14 13 11 39 39 H 1.08994 * 109.61241 * 289.68284 * 15 14 13 40 40 H 1.09001 * 109.61081 * 169.16712 * 15 14 13 41 41 H 0.97009 * 120.00190 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.61674 * 295.48583 * 25 16 15 43 43 H 1.08998 * 109.61250 * 174.96927 * 25 16 15 44 44 H 1.09001 * 109.61164 * 354.69799 * 26 13 11 45 45 H 1.09000 * 109.60874 * 115.21088 * 26 13 11 46 46 H 1.08004 * 119.99793 * 179.73020 * 27 6 5 47 47 H 1.07995 * 120.00718 * 180.23506 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4315 1.2841 -0.0005 5 6 4.0586 2.5148 0.0000 6 6 3.3033 3.6781 0.0005 7 8 3.9207 4.8897 0.0016 8 6 5.3434 4.8927 0.1348 9 1 5.6485 4.0788 0.7927 10 6 5.9850 4.7038 -1.2412 11 6 5.7904 6.2070 0.7212 12 8 4.9922 7.1083 0.8678 13 7 7.0770 6.3809 1.0829 14 6 7.5448 7.6822 1.5802 15 6 8.2012 7.4759 2.9509 16 7 9.1629 6.3692 2.8492 17 6 10.4716 6.5475 3.2109 18 1 11.2349 5.8932 2.8165 19 6 10.8171 7.5694 4.0846 20 7 11.9252 8.2530 3.8923 21 14 9.7092 7.9743 5.5331 22 1 10.1184 7.1667 6.7101 23 1 9.8277 9.4184 5.8584 24 1 8.3010 7.6598 5.1823 25 6 8.6951 5.0678 2.3519 26 6 8.0386 5.2742 0.9812 27 6 1.9183 3.6055 0.0059 28 6 1.2911 2.3749 0.0000 29 1 -0.3633 0.5140 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 4.0197 0.3783 -0.0005 33 1 5.1372 2.5713 0.0000 34 1 5.7592 5.5659 -1.8688 35 1 7.0650 4.6091 -1.1288 36 1 5.5877 3.8016 -1.7066 37 1 8.2732 8.0993 0.8848 38 1 6.6984 8.3621 1.6786 39 1 7.4377 7.2303 3.6890 40 1 8.7215 8.3864 3.2482 41 1 12.1665 8.9674 4.5026 42 1 7.9667 4.6507 3.0472 43 1 9.5414 4.3881 2.2534 44 1 7.5184 4.3637 0.6839 45 1 8.8022 5.5198 0.2431 46 1 1.3301 4.5114 0.0107 47 1 0.2126 2.3183 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130219823.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:19 Heat of formation + Delta-G solvation = -29.660369 kcal Electronic energy + Delta-G solvation = -29083.519141 eV Core-core repulsion = 25041.205148 eV Total energy + Delta-G solvation = -4042.313993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.93171 -40.05539 -38.95029 -37.14164 -36.41496 -34.23914 -32.48921 -31.55724 -31.29141 -30.40962 -29.48828 -27.43329 -27.34819 -24.85066 -23.69142 -23.36422 -22.93602 -21.94073 -20.69275 -19.01713 -18.83925 -17.95453 -17.26873 -16.66318 -16.15628 -16.07357 -15.85579 -15.70065 -15.07124 -14.96166 -14.54986 -14.53823 -14.30896 -13.97649 -13.77256 -13.49881 -13.43265 -13.18859 -12.84899 -12.75078 -12.64557 -12.47616 -12.24838 -12.22917 -12.05257 -11.78393 -11.61122 -11.10673 -10.92801 -10.88451 -10.67563 -10.47876 -10.33112 -10.24371 -9.57022 -9.41758 -9.34472 -8.81865 -8.27562 -7.96528 -7.15053 -6.14195 -3.29701 0.97314 1.21766 2.55960 2.69657 2.99642 3.35198 3.47132 3.47435 3.52161 3.53738 4.34045 4.47585 4.49526 4.51993 4.59691 4.71245 4.72721 4.78097 4.79516 4.87652 5.02430 5.10475 5.12065 5.26225 5.34341 5.38605 5.42159 5.50810 5.63110 5.66487 5.72034 5.82552 5.87626 5.99406 6.02725 6.07370 6.11247 6.15310 6.28744 6.38565 6.47835 6.72936 6.82598 7.00680 7.25541 7.60913 7.79180 8.16809 8.29887 8.81280 9.62179 9.99895 10.99176 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021582 B = 0.002462 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.036890 B =11370.088245 C =11603.166844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.085 3.915 4 C -0.109 4.109 5 C -0.172 4.172 6 C 0.100 3.900 7 O -0.285 6.285 8 C 0.068 3.932 9 H 0.097 0.903 10 C -0.179 4.179 11 C 0.515 3.485 12 O -0.530 6.530 13 N -0.593 5.593 14 C 0.094 3.906 15 C 0.133 3.867 16 N -0.599 5.599 17 C -0.279 4.279 18 H 0.085 0.915 19 C 0.040 3.960 20 N -0.874 5.874 21 Si 0.828 3.172 22 H -0.292 1.292 23 H -0.293 1.293 24 H -0.256 1.256 25 C 0.132 3.868 26 C 0.083 3.917 27 C -0.110 4.110 28 C -0.167 4.167 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.034 0.966 40 H 0.079 0.921 41 H 0.264 0.736 42 H 0.026 0.974 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.135 0.865 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.000 -14.697 -11.048 26.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.041 3.959 4 C -0.128 4.128 5 C -0.190 4.190 6 C 0.054 3.946 7 O -0.197 6.197 8 C 0.009 3.991 9 H 0.114 0.886 10 C -0.236 4.236 11 C 0.301 3.699 12 O -0.407 6.407 13 N -0.328 5.328 14 C -0.029 4.029 15 C 0.007 3.993 16 N -0.322 5.322 17 C -0.406 4.406 18 H 0.102 0.898 19 C -0.162 4.162 20 N -0.513 5.513 21 Si 0.654 3.346 22 H -0.219 1.219 23 H -0.220 1.220 24 H -0.180 1.180 25 C 0.005 3.995 26 C -0.041 4.041 27 C -0.129 4.129 28 C -0.186 4.186 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.051 0.949 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.044 0.956 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.153 0.847 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -19.257 -14.066 -10.932 26.234 hybrid contribution -0.479 0.217 1.076 1.198 sum -19.737 -13.848 -9.856 26.047 Atomic orbital electron populations 1.23033 0.78585 1.03844 1.01293 1.86070 1.21176 1.26730 1.89373 1.18898 0.92294 0.84218 1.00504 1.20207 0.91367 0.98018 1.03161 1.21164 1.00402 0.91393 1.06063 1.18971 0.92325 0.84341 0.98924 1.86222 1.19715 1.26122 1.87686 1.22200 0.80376 0.97839 0.98733 0.88585 1.22417 1.01957 1.03957 0.95262 1.19959 0.82478 0.88659 0.78775 1.90697 1.52145 1.43309 1.54529 1.47921 1.07829 1.13600 1.63406 1.22397 0.99052 0.83475 0.98021 1.21742 0.91985 0.92733 0.92862 1.44305 1.07460 1.05057 1.75404 1.18737 0.81649 1.16405 1.23811 0.89756 1.25092 0.95554 0.96484 0.99026 1.70147 1.26695 1.18832 1.35630 0.87803 0.83293 0.76813 0.86657 1.21948 1.22012 1.18029 1.21313 0.97474 0.89120 0.91634 1.22570 0.92128 0.88276 1.01118 1.20235 0.91452 0.98124 1.03101 1.21043 1.00034 0.91359 1.06144 0.92707 0.92735 0.88338 0.84781 0.84444 0.90729 0.89621 0.90679 0.90925 0.89649 0.94855 0.90322 0.92656 0.95563 0.90453 0.90713 0.90558 0.84697 0.84851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.00 10.50 -19.68 -0.21 -3.21 16 3 C 0.09 0.86 6.69 -39.24 -0.26 0.60 16 4 C -0.11 -1.08 9.98 -39.45 -0.39 -1.47 16 5 C -0.17 -1.76 8.21 -39.45 -0.32 -2.09 16 6 C 0.10 1.21 6.58 -39.25 -0.26 0.96 16 7 O -0.28 -4.09 9.35 -39.49 -0.37 -4.46 16 8 C 0.07 0.87 1.79 -27.88 -0.05 0.82 16 9 H 0.10 1.05 5.33 -51.93 -0.28 0.78 16 10 C -0.18 -1.78 8.77 37.16 0.33 -1.45 16 11 C 0.52 8.59 7.07 -10.98 -0.08 8.51 16 12 O -0.53 -10.85 15.93 -14.24 -0.23 -11.08 16 13 N -0.59 -9.77 2.95 -172.49 -0.51 -10.27 16 14 C 0.09 1.73 6.60 -3.60 -0.02 1.71 16 15 C 0.13 2.84 4.50 -3.60 -0.02 2.83 16 16 N -0.60 -13.32 2.77 -172.04 -0.48 -13.80 16 17 C -0.28 -7.31 9.87 -15.06 -0.15 -7.45 16 18 H 0.08 2.32 8.02 -52.49 -0.42 1.90 16 19 C 0.04 1.11 4.81 -17.43 -0.08 1.02 16 20 N -0.87 -25.44 13.97 55.49 0.78 -24.66 16 21 Si 0.83 20.55 26.45 -169.99 -4.50 16.05 16 22 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.26 -6.07 4.78 56.52 0.27 -5.80 16 25 C 0.13 2.29 6.67 -3.60 -0.02 2.26 16 26 C 0.08 1.17 5.31 -3.60 -0.02 1.15 16 27 C -0.11 -1.21 9.98 -39.45 -0.39 -1.61 16 28 C -0.17 -1.58 9.03 -39.45 -0.36 -1.93 16 29 H 0.05 0.26 7.66 -51.93 -0.40 -0.13 16 30 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.14 1.16 5.48 -52.48 -0.29 0.87 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.74 5.98 -51.93 -0.31 0.43 16 36 H 0.07 0.63 6.97 -51.93 -0.36 0.27 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.09 1.57 6.99 -51.92 -0.36 1.21 16 39 H 0.03 0.74 6.84 -51.93 -0.36 0.38 16 40 H 0.08 1.80 5.26 -51.93 -0.27 1.53 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 1.27 7.91 -51.93 -0.41 0.86 16 44 H 0.07 0.77 4.81 -51.93 -0.25 0.52 16 45 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 47 H 0.13 0.92 6.29 -52.49 -0.33 0.58 16 LS Contribution 366.91 15.07 5.53 5.53 Total: -1.00 -33.43 366.91 -7.75 -41.18 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.66 Total: -0.30 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -1.11 Total: 5.01 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: -0.21 Total: -48.73 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.80 Total: -18.74 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.50 Total: 16.05 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.43 -7.75 -41.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130219823.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.520 kcal (2) G-P(sol) polarization free energy of solvation -33.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds