Wall clock time and date at job start Tue Mar 31 2020 18:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35980 * 117.00045 * 2 1 4 4 C 1.38699 * 119.99819 * 180.02562 * 3 2 1 5 5 C 1.38129 * 119.99952 * 180.02562 * 4 3 2 6 6 C 1.38696 * 120.00003 * 359.97438 * 5 4 3 7 7 O 1.35986 * 119.99871 * 179.97438 * 6 5 4 8 8 C 1.42897 * 116.99974 * 354.01515 * 7 6 5 9 9 H 1.09006 * 109.47672 * 325.10620 * 8 7 6 10 10 C 1.53001 * 109.47378 * 85.10725 * 8 7 6 11 11 C 1.50700 * 109.47454 * 205.10585 * 8 7 6 12 12 O 1.21284 * 119.99764 * 352.29294 * 11 8 7 13 13 N 1.34779 * 120.00440 * 172.28957 * 11 8 7 14 14 C 1.46960 * 120.59421 * 176.29761 * 13 11 8 15 15 C 1.53371 * 108.63758 * 125.04502 * 14 13 11 16 16 N 1.46966 * 108.63061 * 49.42590 * 15 14 13 17 17 C 1.36938 * 120.59851 * 124.75388 * 16 15 14 18 18 H 1.07998 * 120.00604 * 202.33822 * 17 16 15 19 19 C 1.38818 * 119.99684 * 22.33440 * 17 16 15 20 20 N 1.31611 * 119.99831 * 218.90417 * 19 17 16 21 21 Si 1.86798 * 119.99848 * 38.90408 * 19 17 16 22 22 H 1.48491 * 109.47446 * 90.02841 * 21 19 17 23 23 H 1.48504 * 109.46878 * 210.02573 * 21 19 17 24 24 H 1.48500 * 109.47229 * 330.02416 * 21 19 17 25 25 C 1.46964 * 118.81198 * 304.76902 * 16 15 14 26 26 C 1.46959 * 120.59131 * 356.57280 * 13 11 8 27 27 C 1.38690 * 120.00059 * 0.25652 * 6 5 4 28 28 C 1.38130 * 120.00143 * 359.48767 * 27 6 5 29 29 H 1.08994 * 109.46907 * 300.01075 * 1 2 3 30 30 H 1.09005 * 109.46668 * 60.00593 * 1 2 3 31 31 H 1.08997 * 109.47075 * 180.02562 * 1 2 3 32 32 H 1.08002 * 120.00176 * 359.97438 * 4 3 2 33 33 H 1.08008 * 119.99915 * 179.97438 * 5 4 3 34 34 H 1.09005 * 109.46928 * 65.44174 * 10 8 7 35 35 H 1.08992 * 109.47456 * 185.44685 * 10 8 7 36 36 H 1.09006 * 109.46926 * 305.44764 * 10 8 7 37 37 H 1.08999 * 109.60866 * 244.79376 * 14 13 11 38 38 H 1.09009 * 109.61290 * 5.30188 * 14 13 11 39 39 H 1.08994 * 109.61241 * 289.68284 * 15 14 13 40 40 H 1.09001 * 109.61081 * 169.16712 * 15 14 13 41 41 H 0.97009 * 120.00190 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.61674 * 295.48583 * 25 16 15 43 43 H 1.08998 * 109.61250 * 174.96927 * 25 16 15 44 44 H 1.09001 * 109.61164 * 354.69799 * 26 13 11 45 45 H 1.09000 * 109.60874 * 115.21088 * 26 13 11 46 46 H 1.08004 * 119.99793 * 179.73020 * 27 6 5 47 47 H 1.07995 * 120.00718 * 180.23506 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4315 1.2841 -0.0005 5 6 4.0586 2.5148 0.0000 6 6 3.3033 3.6781 0.0005 7 8 3.9207 4.8897 0.0016 8 6 5.3434 4.8927 0.1348 9 1 5.6485 4.0788 0.7927 10 6 5.9850 4.7038 -1.2412 11 6 5.7904 6.2070 0.7212 12 8 4.9922 7.1083 0.8678 13 7 7.0770 6.3809 1.0829 14 6 7.5448 7.6822 1.5802 15 6 8.2012 7.4759 2.9509 16 7 9.1629 6.3692 2.8492 17 6 10.4716 6.5475 3.2109 18 1 11.2349 5.8932 2.8165 19 6 10.8171 7.5694 4.0846 20 7 11.9252 8.2530 3.8923 21 14 9.7092 7.9743 5.5331 22 1 10.1184 7.1667 6.7101 23 1 9.8277 9.4184 5.8584 24 1 8.3010 7.6598 5.1823 25 6 8.6951 5.0678 2.3519 26 6 8.0386 5.2742 0.9812 27 6 1.9183 3.6055 0.0059 28 6 1.2911 2.3749 0.0000 29 1 -0.3633 0.5140 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 4.0197 0.3783 -0.0005 33 1 5.1372 2.5713 0.0000 34 1 5.7592 5.5659 -1.8688 35 1 7.0650 4.6091 -1.1288 36 1 5.5877 3.8016 -1.7066 37 1 8.2732 8.0993 0.8848 38 1 6.6984 8.3621 1.6786 39 1 7.4377 7.2303 3.6890 40 1 8.7215 8.3864 3.2482 41 1 12.1665 8.9674 4.5026 42 1 7.9667 4.6507 3.0472 43 1 9.5414 4.3881 2.2534 44 1 7.5184 4.3637 0.6839 45 1 8.8022 5.5198 0.2431 46 1 1.3301 4.5114 0.0107 47 1 0.2126 2.3183 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130219823.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:18 Heat of formation + Delta-G solvation = -50.921575 kcal Electronic energy + Delta-G solvation = -29084.441096 eV Core-core repulsion = 25041.205148 eV Total energy + Delta-G solvation = -4043.235948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.89909 -41.03052 -39.90125 -38.58062 -37.27073 -35.83482 -33.80479 -33.19233 -32.23440 -31.61401 -30.19469 -28.94504 -27.97151 -26.06984 -25.21550 -24.56448 -23.87582 -22.96005 -22.02689 -20.35243 -19.64993 -18.84778 -18.64451 -18.01990 -17.38663 -16.99443 -16.79701 -16.70065 -16.52968 -16.04888 -15.82650 -15.75177 -15.64017 -15.22891 -14.78511 -14.72483 -14.41156 -14.28089 -14.14845 -14.11702 -13.73213 -13.55407 -13.45780 -13.23631 -12.95577 -12.76574 -12.57480 -12.55581 -12.35171 -12.19651 -12.10183 -11.92068 -11.63693 -11.44185 -11.39390 -10.79837 -10.64665 -10.08552 -9.93190 -8.96350 -8.74163 -8.23884 -5.34265 0.24930 0.43977 1.34010 1.41564 1.45644 1.49979 1.50558 2.36412 2.44506 2.50503 2.72524 2.89920 3.26023 3.36777 3.63225 3.82568 3.85001 3.88898 4.05677 4.09199 4.12443 4.26591 4.32716 4.38593 4.42379 4.43365 4.55034 4.56801 4.58146 4.63374 4.69339 4.72904 4.76206 4.87470 4.95628 4.97835 5.00450 5.13566 5.18205 5.29670 5.32399 5.41669 5.56870 5.82759 6.09184 6.23105 6.37109 6.52049 6.87186 7.01273 7.62669 8.04559 8.92595 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021582 B = 0.002462 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.036890 B =11370.088245 C =11603.166844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.079 3.921 4 C -0.116 4.116 5 C -0.168 4.168 6 C 0.075 3.925 7 O -0.312 6.312 8 C 0.073 3.927 9 H 0.121 0.879 10 C -0.172 4.172 11 C 0.512 3.488 12 O -0.576 6.576 13 N -0.595 5.595 14 C 0.104 3.896 15 C 0.134 3.866 16 N -0.612 5.612 17 C -0.258 4.258 18 H 0.067 0.933 19 C -0.011 4.011 20 N -0.920 5.920 21 Si 0.881 3.119 22 H -0.302 1.302 23 H -0.301 1.301 24 H -0.241 1.241 25 C 0.123 3.877 26 C 0.090 3.910 27 C -0.125 4.125 28 C -0.166 4.166 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.118 0.882 32 H 0.151 0.849 33 H 0.158 0.842 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.027 0.973 40 H 0.057 0.943 41 H 0.261 0.739 42 H 0.035 0.965 43 H 0.088 0.912 44 H 0.122 0.878 45 H 0.084 0.916 46 H 0.134 0.866 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.634 -17.490 -12.172 29.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.035 3.965 4 C -0.135 4.135 5 C -0.186 4.186 6 C 0.030 3.970 7 O -0.226 6.226 8 C 0.014 3.986 9 H 0.138 0.862 10 C -0.230 4.230 11 C 0.300 3.700 12 O -0.455 6.455 13 N -0.328 5.328 14 C -0.021 4.021 15 C 0.008 3.992 16 N -0.336 5.336 17 C -0.386 4.386 18 H 0.084 0.916 19 C -0.209 4.209 20 N -0.563 5.563 21 Si 0.709 3.291 22 H -0.230 1.230 23 H -0.229 1.229 24 H -0.165 1.165 25 C -0.002 4.002 26 C -0.033 4.033 27 C -0.143 4.143 28 C -0.184 4.184 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.169 0.831 33 H 0.176 0.824 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.045 0.955 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.107 0.893 44 H 0.140 0.860 45 H 0.102 0.898 46 H 0.152 0.848 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -20.937 -16.916 -12.072 29.500 hybrid contribution -0.078 0.953 1.369 1.670 sum -21.015 -15.963 -10.703 28.478 Atomic orbital electron populations 1.23320 0.76739 1.05498 1.02124 1.86058 1.23173 1.26414 1.89197 1.19129 0.92767 0.84673 0.99975 1.20489 0.91667 0.98565 1.02763 1.21340 1.01317 0.90715 1.05225 1.19195 0.92811 0.84232 1.00728 1.86179 1.20409 1.27686 1.88328 1.22257 0.80363 0.95609 1.00420 0.86208 1.22429 1.02862 1.04359 0.93306 1.20718 0.81758 0.89727 0.77767 1.90674 1.53299 1.45250 1.56304 1.47976 1.08436 1.13306 1.63043 1.22068 0.98673 0.84946 0.96381 1.21632 0.91468 0.91732 0.94385 1.44442 1.06360 1.07368 1.75405 1.18770 0.83174 1.14696 1.21979 0.91575 1.25531 0.96743 0.97466 1.01139 1.70216 1.28946 1.20381 1.36766 0.86953 0.82626 0.75816 0.83738 1.23002 1.22855 1.16547 1.21603 0.98370 0.86921 0.93317 1.22660 0.92188 0.89368 0.99105 1.20421 0.91530 0.98814 1.03565 1.21250 1.01219 0.90611 1.05367 0.92000 0.91734 0.86424 0.83131 0.82418 0.92070 0.87741 0.88624 0.90850 0.90007 0.95491 0.92434 0.92972 0.94663 0.89320 0.86000 0.89770 0.84803 0.82676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.33 -5.47 10.50 -93.32 -0.98 -6.45 16 3 C 0.08 1.42 6.69 22.49 0.15 1.57 16 4 C -0.12 -1.97 9.98 22.35 0.22 -1.75 16 5 C -0.17 -2.94 8.21 22.35 0.18 -2.75 16 6 C 0.07 1.69 6.58 22.49 0.15 1.84 16 7 O -0.31 -8.50 9.35 -74.47 -0.70 -9.20 16 8 C 0.07 1.65 1.79 29.85 0.05 1.71 16 9 H 0.12 2.10 5.33 -2.38 -0.01 2.09 16 10 C -0.17 -2.81 8.77 71.98 0.63 -2.18 16 11 C 0.51 16.16 7.07 87.66 0.62 16.78 16 12 O -0.58 -23.42 15.93 15.88 0.25 -23.17 16 13 N -0.59 -18.26 2.95 -818.01 -2.41 -20.67 16 14 C 0.10 3.74 6.60 86.42 0.57 4.31 16 15 C 0.13 5.65 4.50 86.41 0.39 6.04 16 16 N -0.61 -26.43 2.77 -698.20 -1.94 -28.37 16 17 C -0.26 -13.43 9.87 84.03 0.83 -12.60 16 18 H 0.07 3.65 8.02 -2.91 -0.02 3.62 16 19 C -0.01 -0.59 4.81 84.86 0.41 -0.19 16 20 N -0.92 -54.86 13.97 21.65 0.30 -54.55 16 21 Si 0.88 43.32 26.45 68.60 1.81 45.14 16 22 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 23 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 24 H -0.24 -11.15 4.78 99.48 0.48 -10.68 16 25 C 0.12 3.92 6.67 86.42 0.58 4.50 16 26 C 0.09 2.18 5.31 86.42 0.46 2.64 16 27 C -0.12 -2.59 9.98 22.35 0.22 -2.37 16 28 C -0.17 -2.81 9.03 22.35 0.20 -2.61 16 29 H 0.06 0.44 7.66 -2.39 -0.02 0.42 16 30 H 0.06 0.42 7.66 -2.38 -0.02 0.40 16 31 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 33 H 0.16 1.95 5.48 -2.91 -0.02 1.94 16 34 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.10 1.29 5.98 -2.39 -0.01 1.28 16 36 H 0.10 1.21 6.97 -2.38 -0.02 1.19 16 37 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.08 3.02 6.99 -2.38 -0.02 3.00 16 39 H 0.03 1.18 6.84 -2.39 -0.02 1.16 16 40 H 0.06 2.65 5.26 -2.39 -0.01 2.64 16 41 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 42 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.09 2.63 7.91 -2.39 -0.02 2.62 16 44 H 0.12 1.85 4.81 -2.39 -0.01 1.84 16 45 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 47 H 0.16 1.78 6.29 -2.91 -0.02 1.76 16 Total: -1.00 -74.36 366.91 3.89 -70.48 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 0.76 Total: 10.59 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 6.78 Total: 16.20 kcal Atomic # 7 Polarization: -99.54 SS G_CDS: -4.04 Total: -103.59 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -1.42 Total: -38.82 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.81 Total: 45.14 kcal Total: -74.36 3.89 -70.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130219823.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.554 kcal (2) G-P(sol) polarization free energy of solvation -74.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds