Wall clock time and date at job start Tue Mar 31 2020 18:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47338 * 2 1 4 4 C 1.52997 * 109.47439 * 239.99964 * 2 1 3 5 5 O 1.42901 * 109.46688 * 304.99925 * 4 2 1 6 6 N 1.46496 * 109.46992 * 119.99695 * 2 1 3 7 7 C 1.34777 * 120.00018 * 274.99606 * 6 2 1 8 8 O 1.21279 * 120.00275 * 0.02562 * 7 6 2 9 9 C 1.50707 * 120.00134 * 179.97438 * 7 6 2 10 10 C 1.52994 * 109.47078 * 180.02562 * 9 7 6 11 11 C 1.50707 * 109.46774 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00097 * 354.45796 * 11 10 9 13 13 N 1.34775 * 119.99667 * 174.45902 * 11 10 9 14 14 C 1.46506 * 120.00030 * 184.45100 * 13 11 10 15 15 C 1.50707 * 109.47103 * 270.00389 * 14 13 11 16 16 H 1.07998 * 119.99957 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99566 * 179.97438 * 15 14 13 18 18 N 1.31505 * 120.00165 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99610 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47478 * 90.00050 * 19 17 15 21 21 H 1.48497 * 109.46998 * 210.00158 * 19 17 15 22 22 H 1.48508 * 109.46959 * 329.99740 * 19 17 15 23 23 C 1.39923 * 120.00153 * 4.45919 * 13 11 10 24 24 C 1.38872 * 120.07336 * 66.79372 * 23 13 11 25 25 C 1.38113 * 119.92646 * 179.97438 * 24 23 13 26 26 C 1.38284 * 120.07236 * 359.97313 * 25 24 23 27 27 C 1.38277 * 120.14310 * 0.04475 * 26 25 24 28 28 C 1.38117 * 120.06854 * 359.96101 * 27 26 25 29 29 H 1.08997 * 109.46955 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47230 * 300.00357 * 1 2 3 31 31 H 1.09000 * 109.47139 * 60.00250 * 1 2 3 32 32 H 1.09000 * 109.47206 * 64.99302 * 4 2 1 33 33 H 1.09002 * 109.47498 * 185.00106 * 4 2 1 34 34 H 0.96708 * 113.99684 * 179.97438 * 5 4 2 35 35 H 0.97003 * 120.00423 * 95.00677 * 6 2 1 36 36 H 1.09004 * 109.46647 * 60.00234 * 9 7 6 37 37 H 1.09001 * 109.46925 * 300.01087 * 9 7 6 38 38 H 1.08998 * 109.47255 * 60.00377 * 10 9 7 39 39 H 1.08998 * 109.47196 * 299.99859 * 10 9 7 40 40 H 1.09001 * 109.46670 * 30.00181 * 14 13 11 41 41 H 1.08996 * 109.47328 * 150.00546 * 14 13 11 42 42 H 0.97008 * 120.00038 * 179.97438 * 18 17 15 43 43 H 1.07996 * 120.03472 * 359.70196 * 24 23 13 44 44 H 1.07998 * 119.96255 * 179.97438 * 25 24 23 45 45 H 1.08010 * 119.92736 * 180.02562 * 26 25 24 46 46 H 1.07999 * 119.96673 * 179.97438 * 27 26 25 47 47 H 1.07999 * 120.03237 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 1.4703 -2.0303 -1.3093 6 7 2.0183 -0.6905 1.1962 7 6 2.1471 -0.0181 2.3571 8 8 1.8583 1.1585 2.4117 9 6 2.6488 -0.7286 3.5878 10 6 2.6999 0.2545 4.7590 11 6 3.2023 -0.4559 5.9896 12 8 3.3953 -1.6530 5.9624 13 7 3.4369 0.2390 7.1202 14 6 4.0170 -0.4326 8.2858 15 6 2.9118 -0.9807 9.1515 16 1 1.8805 -0.8429 8.8620 17 6 3.2174 -1.6590 10.3123 18 7 4.4733 -1.8281 10.6639 19 14 1.8475 -2.3390 11.3848 20 1 1.5233 -3.7231 10.9555 21 1 2.2887 -2.3511 12.8027 22 1 0.6414 -1.4832 11.2491 23 6 3.1264 1.6020 7.1809 24 6 1.8023 2.0172 7.1265 25 6 1.4992 3.3632 7.1871 26 6 2.5124 4.2972 7.3025 27 6 3.8319 3.8871 7.3565 28 6 4.1417 2.5425 7.2962 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.7516 -0.1584 -2.1369 33 1 3.1264 -0.7995 -1.2055 34 1 1.7501 -2.5462 -2.0780 35 1 2.2491 -1.6317 1.1527 36 1 3.6480 -1.1212 3.3987 37 1 1.9759 -1.5504 3.8326 38 1 1.7006 0.6467 4.9480 39 1 3.3726 1.0765 4.5144 40 1 4.6571 -1.2498 7.9530 41 1 4.6079 0.2812 8.8598 42 1 4.6883 -2.3050 11.4808 43 1 1.0108 1.2885 7.0324 44 1 0.4697 3.6868 7.1445 45 1 2.2727 5.3493 7.3501 46 1 4.6210 4.6190 7.4462 47 1 5.1724 2.2229 7.3381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000137748965.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:26 Heat of formation + Delta-G solvation = -101.813489 kcal Electronic energy + Delta-G solvation = -28634.545327 eV Core-core repulsion = 24589.102540 eV Total energy + Delta-G solvation = -4045.442787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.18061 -39.63939 -38.09566 -37.62447 -34.95495 -34.83394 -32.92621 -32.47022 -30.93912 -30.56503 -29.31140 -27.46547 -26.79987 -25.24864 -22.85970 -22.38709 -21.98125 -21.16681 -20.38002 -18.88883 -18.02887 -17.47601 -16.63986 -16.43211 -16.26717 -15.84128 -15.77129 -15.35707 -15.01336 -14.73316 -14.31015 -14.24841 -13.99638 -13.88289 -13.63472 -13.20434 -13.07025 -12.83172 -12.67874 -12.46730 -12.22261 -12.11033 -11.86469 -11.70125 -11.42537 -11.30490 -11.16690 -11.07290 -10.84217 -10.78604 -10.61990 -10.53328 -10.16134 -9.81377 -9.71453 -9.27413 -9.22256 -8.60257 -8.52310 -8.42293 -7.62166 -6.04707 -4.08734 1.65150 1.73555 2.63934 3.01121 3.30345 3.32385 3.37969 3.41936 3.78603 3.86684 4.12526 4.45368 4.46898 4.68620 4.73614 4.91967 5.09780 5.14379 5.21552 5.24197 5.25670 5.28660 5.31175 5.33900 5.43848 5.52160 5.73532 5.75924 5.80119 5.89814 6.02898 6.07358 6.14231 6.14437 6.33875 6.37217 6.68078 6.81138 6.86722 7.01774 7.13804 7.25426 7.36705 7.41853 7.51095 7.90877 8.18722 8.20185 8.36600 8.85723 9.00314 9.55604 11.03698 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011248 B = 0.002994 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.664322 B = 9351.219646 C =10902.125041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.143 3.857 3 H 0.098 0.902 4 C 0.067 3.933 5 O -0.569 6.569 6 N -0.727 5.727 7 C 0.516 3.484 8 O -0.541 6.541 9 C -0.124 4.124 10 C -0.123 4.123 11 C 0.512 3.488 12 O -0.530 6.530 13 N -0.561 5.561 14 C 0.248 3.752 15 C -0.523 4.523 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.165 3.835 24 C -0.122 4.122 25 C -0.108 4.108 26 C -0.134 4.134 27 C -0.110 4.110 28 C -0.126 4.126 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.381 0.619 35 H 0.406 0.594 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.046 0.954 41 H 0.035 0.965 42 H 0.263 0.737 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.117 0.883 46 H 0.120 0.880 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.641 7.372 -21.749 23.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.038 3.962 3 H 0.116 0.884 4 C -0.011 4.011 5 O -0.375 6.375 6 N -0.380 5.380 7 C 0.303 3.697 8 O -0.418 6.418 9 C -0.165 4.165 10 C -0.164 4.164 11 C 0.300 3.700 12 O -0.407 6.407 13 N -0.289 5.289 14 C 0.130 3.870 15 C -0.562 4.562 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.534 5.534 19 Si 0.726 3.274 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.199 1.199 23 C 0.073 3.927 24 C -0.141 4.141 25 C -0.127 4.127 26 C -0.153 4.153 27 C -0.129 4.129 28 C -0.145 4.145 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.228 0.772 35 H 0.241 0.759 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.135 0.865 46 H 0.138 0.862 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.881 7.649 -21.007 22.690 hybrid contribution -0.336 -0.994 0.239 1.077 sum -4.218 6.655 -20.767 22.212 Atomic orbital electron populations 1.22065 0.94695 1.02866 1.02146 1.21014 0.95214 0.96702 0.83259 0.88438 1.22489 0.96924 0.84331 0.97362 1.86497 1.72998 1.27171 1.50797 1.46049 1.68013 1.14476 1.09438 1.20883 0.76889 0.87296 0.84629 1.90693 1.49961 1.16129 1.85040 1.21387 1.04199 0.99425 0.91442 1.21419 1.04199 0.98646 0.92117 1.20407 0.78127 0.87359 0.84084 1.90677 1.51500 1.14208 1.84311 1.45963 1.61858 1.06391 1.14674 1.19424 0.94218 0.92808 0.80508 1.21366 0.93121 1.35527 1.06178 0.92393 1.24906 0.95714 0.95848 0.97545 1.69925 1.16905 1.41979 1.24638 0.86487 0.82013 0.79499 0.79393 1.20517 1.21124 1.19875 1.17705 0.92427 0.84220 0.98371 1.21330 0.95603 0.96175 1.01015 1.20955 0.99108 0.92597 1.00023 1.21041 0.92981 0.99172 1.02085 1.20944 0.96461 0.95176 1.00277 1.21280 0.99170 0.92688 1.01406 0.91501 0.92070 0.92081 0.92197 0.92870 0.77157 0.75945 0.88245 0.87879 0.88506 0.88884 0.93553 0.94703 0.92699 0.86046 0.86195 0.86454 0.86174 0.85862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.29 37.16 0.35 -1.14 16 2 C 0.14 1.28 2.98 -67.93 -0.20 1.07 16 3 H 0.10 0.95 7.58 -51.93 -0.39 0.56 16 4 C 0.07 0.40 6.79 37.16 0.25 0.65 16 5 O -0.57 -3.58 12.51 -35.23 -0.44 -4.02 16 6 N -0.73 -7.39 5.06 -53.81 -0.27 -7.66 16 7 C 0.52 6.77 7.79 -10.98 -0.09 6.68 16 8 O -0.54 -8.74 15.64 5.56 0.09 -8.65 16 9 C -0.12 -1.70 5.01 -27.88 -0.14 -1.84 16 10 C -0.12 -2.00 3.65 -27.88 -0.10 -2.10 16 11 C 0.51 10.69 7.53 -10.98 -0.08 10.61 16 12 O -0.53 -12.81 15.61 5.55 0.09 -12.72 16 13 N -0.56 -12.32 2.51 -114.73 -0.29 -12.61 16 14 C 0.25 6.56 5.07 -5.19 -0.03 6.54 16 15 C -0.52 -15.04 9.39 -34.44 -0.32 -15.37 16 16 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 17 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.90 -26.74 13.28 55.43 0.74 -26.01 16 19 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.16 3.13 4.42 -83.69 -0.37 2.76 16 24 C -0.12 -2.09 8.46 -39.39 -0.33 -2.43 16 25 C -0.11 -1.57 10.04 -39.61 -0.40 -1.96 16 26 C -0.13 -1.80 10.04 -39.55 -0.40 -2.20 16 27 C -0.11 -1.55 10.04 -39.61 -0.40 -1.95 16 28 C -0.13 -2.12 9.64 -39.39 -0.38 -2.50 16 29 H 0.07 0.66 7.56 -51.93 -0.39 0.26 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.38 0.77 9.12 45.56 0.42 1.19 16 35 H 0.41 3.53 8.38 -40.82 -0.34 3.19 16 36 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.10 1.41 8.04 -51.93 -0.42 0.99 16 38 H 0.10 1.56 6.95 -51.93 -0.36 1.20 16 39 H 0.09 1.47 7.97 -51.93 -0.41 1.06 16 40 H 0.05 1.35 7.49 -51.93 -0.39 0.96 16 41 H 0.03 0.94 7.83 -51.93 -0.41 0.54 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.12 2.10 7.90 -52.49 -0.41 1.68 16 44 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 46 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 47 H 0.12 2.02 8.06 -52.49 -0.42 1.59 16 LS Contribution 398.96 15.07 6.01 6.01 Total: -1.00 -35.70 398.96 -8.30 -44.01 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.47 Total: 5.98 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -2.74 Total: -1.49 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: 0.18 Total: -46.28 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.27 Total: -25.39 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.70 -8.30 -44.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137748965.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.807 kcal (2) G-P(sol) polarization free energy of solvation -35.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds