Wall clock time and date at job start Tue Mar 31 2020 18:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47338 * 2 1 4 4 C 1.52997 * 109.47439 * 239.99964 * 2 1 3 5 5 O 1.42901 * 109.46688 * 304.99925 * 4 2 1 6 6 N 1.46496 * 109.46992 * 119.99695 * 2 1 3 7 7 C 1.34777 * 120.00018 * 274.99606 * 6 2 1 8 8 O 1.21279 * 120.00275 * 0.02562 * 7 6 2 9 9 C 1.50707 * 120.00134 * 179.97438 * 7 6 2 10 10 C 1.52994 * 109.47078 * 180.02562 * 9 7 6 11 11 C 1.50707 * 109.46774 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00097 * 354.45796 * 11 10 9 13 13 N 1.34775 * 119.99667 * 174.45902 * 11 10 9 14 14 C 1.46506 * 120.00030 * 184.45100 * 13 11 10 15 15 C 1.50707 * 109.47103 * 270.00389 * 14 13 11 16 16 H 1.07998 * 119.99957 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99566 * 179.97438 * 15 14 13 18 18 N 1.31505 * 120.00165 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99610 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47478 * 90.00050 * 19 17 15 21 21 H 1.48497 * 109.46998 * 210.00158 * 19 17 15 22 22 H 1.48508 * 109.46959 * 329.99740 * 19 17 15 23 23 C 1.39923 * 120.00153 * 4.45919 * 13 11 10 24 24 C 1.38872 * 120.07336 * 66.79372 * 23 13 11 25 25 C 1.38113 * 119.92646 * 179.97438 * 24 23 13 26 26 C 1.38284 * 120.07236 * 359.97313 * 25 24 23 27 27 C 1.38277 * 120.14310 * 0.04475 * 26 25 24 28 28 C 1.38117 * 120.06854 * 359.96101 * 27 26 25 29 29 H 1.08997 * 109.46955 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47230 * 300.00357 * 1 2 3 31 31 H 1.09000 * 109.47139 * 60.00250 * 1 2 3 32 32 H 1.09000 * 109.47206 * 64.99302 * 4 2 1 33 33 H 1.09002 * 109.47498 * 185.00106 * 4 2 1 34 34 H 0.96708 * 113.99684 * 179.97438 * 5 4 2 35 35 H 0.97003 * 120.00423 * 95.00677 * 6 2 1 36 36 H 1.09004 * 109.46647 * 60.00234 * 9 7 6 37 37 H 1.09001 * 109.46925 * 300.01087 * 9 7 6 38 38 H 1.08998 * 109.47255 * 60.00377 * 10 9 7 39 39 H 1.08998 * 109.47196 * 299.99859 * 10 9 7 40 40 H 1.09001 * 109.46670 * 30.00181 * 14 13 11 41 41 H 1.08996 * 109.47328 * 150.00546 * 14 13 11 42 42 H 0.97008 * 120.00038 * 179.97438 * 18 17 15 43 43 H 1.07996 * 120.03472 * 359.70196 * 24 23 13 44 44 H 1.07998 * 119.96255 * 179.97438 * 25 24 23 45 45 H 1.08010 * 119.92736 * 180.02562 * 26 25 24 46 46 H 1.07999 * 119.96673 * 179.97438 * 27 26 25 47 47 H 1.07999 * 120.03237 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 1.4703 -2.0303 -1.3093 6 7 2.0183 -0.6905 1.1962 7 6 2.1471 -0.0181 2.3571 8 8 1.8583 1.1585 2.4117 9 6 2.6488 -0.7286 3.5878 10 6 2.6999 0.2545 4.7590 11 6 3.2023 -0.4559 5.9896 12 8 3.3953 -1.6530 5.9624 13 7 3.4369 0.2390 7.1202 14 6 4.0170 -0.4326 8.2858 15 6 2.9118 -0.9807 9.1515 16 1 1.8805 -0.8429 8.8620 17 6 3.2174 -1.6590 10.3123 18 7 4.4733 -1.8281 10.6639 19 14 1.8475 -2.3390 11.3848 20 1 1.5233 -3.7231 10.9555 21 1 2.2887 -2.3511 12.8027 22 1 0.6414 -1.4832 11.2491 23 6 3.1264 1.6020 7.1809 24 6 1.8023 2.0172 7.1265 25 6 1.4992 3.3632 7.1871 26 6 2.5124 4.2972 7.3025 27 6 3.8319 3.8871 7.3565 28 6 4.1417 2.5425 7.2962 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.7516 -0.1584 -2.1369 33 1 3.1264 -0.7995 -1.2055 34 1 1.7501 -2.5462 -2.0780 35 1 2.2491 -1.6317 1.1527 36 1 3.6480 -1.1212 3.3987 37 1 1.9759 -1.5504 3.8326 38 1 1.7006 0.6467 4.9480 39 1 3.3726 1.0765 4.5144 40 1 4.6571 -1.2498 7.9530 41 1 4.6079 0.2812 8.8598 42 1 4.6883 -2.3050 11.4808 43 1 1.0108 1.2885 7.0324 44 1 0.4697 3.6868 7.1445 45 1 2.2727 5.3493 7.3501 46 1 4.6210 4.6190 7.4462 47 1 5.1724 2.2229 7.3381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000137748965.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:25 Heat of formation + Delta-G solvation = -127.580676 kcal Electronic energy + Delta-G solvation = -28635.662676 eV Core-core repulsion = 24589.102540 eV Total energy + Delta-G solvation = -4046.560136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.55684 -40.80649 -39.48141 -38.29423 -36.56192 -35.68994 -34.83734 -33.96374 -31.94121 -31.70191 -30.82921 -29.25585 -27.43876 -26.72987 -24.67076 -23.68641 -23.30020 -22.05156 -21.36971 -20.37770 -18.93277 -18.71936 -18.38060 -17.68405 -17.37513 -17.12872 -17.01817 -16.93585 -16.25962 -16.11210 -15.55233 -15.48665 -15.14889 -14.93123 -14.55088 -14.51293 -14.33767 -14.27866 -13.89591 -13.69620 -13.56931 -13.43905 -13.25840 -13.08805 -12.95730 -12.67796 -12.48006 -12.41540 -12.26430 -12.12656 -12.09913 -11.97613 -11.73387 -11.02875 -10.95380 -10.82845 -10.67778 -10.12596 -10.10593 -9.81432 -9.21944 -8.25495 -6.39954 0.37915 0.51754 1.34232 1.37029 1.46845 1.58382 1.66201 1.97125 2.31131 2.42208 2.88968 3.04313 3.36615 3.49304 3.83773 3.86325 4.00864 4.08611 4.10335 4.12834 4.14053 4.31866 4.42310 4.53753 4.59277 4.60767 4.65898 4.67008 4.75386 4.80259 4.83794 4.91666 4.98971 5.00371 5.09862 5.16042 5.32106 5.41439 5.52758 5.54342 5.63142 5.66424 5.77420 6.00235 6.08449 6.50872 6.63701 6.70876 6.92569 7.19216 7.21871 7.34961 8.81806 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011248 B = 0.002994 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.664322 B = 9351.219646 C =10902.125041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.135 3.865 3 H 0.090 0.910 4 C 0.075 3.925 5 O -0.587 6.587 6 N -0.713 5.713 7 C 0.521 3.479 8 O -0.573 6.573 9 C -0.120 4.120 10 C -0.103 4.103 11 C 0.506 3.494 12 O -0.573 6.573 13 N -0.564 5.564 14 C 0.266 3.734 15 C -0.541 4.541 16 H 0.050 0.950 17 C 0.010 3.990 18 N -0.926 5.926 19 Si 0.967 3.033 20 H -0.276 1.276 21 H -0.273 1.273 22 H -0.266 1.266 23 C 0.127 3.873 24 C -0.136 4.136 25 C -0.105 4.105 26 C -0.121 4.121 27 C -0.104 4.104 28 C -0.141 4.141 29 H 0.061 0.939 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.400 0.600 35 H 0.414 0.586 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.008 0.992 41 H 0.021 0.979 42 H 0.268 0.732 43 H 0.111 0.889 44 H 0.150 0.850 45 H 0.159 0.841 46 H 0.154 0.846 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.972 9.189 -22.889 25.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.030 3.970 3 H 0.108 0.892 4 C -0.003 4.003 5 O -0.396 6.396 6 N -0.365 5.365 7 C 0.309 3.691 8 O -0.453 6.453 9 C -0.160 4.160 10 C -0.144 4.144 11 C 0.296 3.704 12 O -0.453 6.453 13 N -0.291 5.291 14 C 0.146 3.854 15 C -0.580 4.580 16 H 0.068 0.932 17 C -0.189 4.189 18 N -0.566 5.566 19 Si 0.791 3.209 20 H -0.202 1.202 21 H -0.197 1.197 22 H -0.190 1.190 23 C 0.037 3.963 24 C -0.156 4.156 25 C -0.124 4.124 26 C -0.139 4.139 27 C -0.122 4.122 28 C -0.161 4.161 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.251 0.749 35 H 0.251 0.749 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.026 0.974 41 H 0.039 0.961 42 H 0.077 0.923 43 H 0.129 0.871 44 H 0.168 0.832 45 H 0.177 0.823 46 H 0.171 0.829 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.216 9.474 -22.200 24.694 hybrid contribution 0.097 -1.482 0.547 1.583 sum -5.119 7.992 -21.653 23.641 Atomic orbital electron populations 1.22006 0.94947 1.02362 1.01900 1.21218 0.95028 0.96861 0.83860 0.89166 1.22398 0.97221 0.84382 0.96288 1.86444 1.73374 1.27445 1.52305 1.45985 1.66689 1.14817 1.09047 1.20627 0.76671 0.86762 0.85072 1.90677 1.51692 1.17357 1.85561 1.21329 1.04859 0.98778 0.91045 1.21257 1.03898 0.98708 0.90499 1.21225 0.77155 0.87051 0.84945 1.90636 1.53457 1.16117 1.85086 1.45812 1.61573 1.08013 1.13678 1.18851 0.93313 0.91508 0.81727 1.21596 0.93107 1.36217 1.07035 0.93210 1.25817 0.98305 0.95898 0.98864 1.70036 1.18858 1.42449 1.25262 0.85426 0.79004 0.78671 0.77811 1.20185 1.19746 1.18998 1.17967 0.93934 0.82724 1.01707 1.21369 0.94476 0.97642 1.02119 1.21332 1.01158 0.91309 0.98572 1.21546 0.92092 1.01014 0.99272 1.21341 0.98106 0.94246 0.98530 1.21395 0.98488 0.93960 1.02236 0.92027 0.94488 0.90158 0.90019 0.91957 0.74937 0.74947 0.87431 0.87927 0.88272 0.88286 0.97409 0.96111 0.92268 0.87105 0.83207 0.82329 0.82855 0.86558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.29 71.98 0.67 -2.05 16 2 C 0.13 2.23 2.98 44.99 0.13 2.37 16 3 H 0.09 1.67 7.58 -2.39 -0.02 1.65 16 4 C 0.08 0.72 6.79 71.98 0.49 1.21 16 5 O -0.59 -6.08 12.51 -148.98 -1.86 -7.95 16 6 N -0.71 -13.95 5.06 -442.54 -2.24 -16.19 16 7 C 0.52 13.61 7.79 87.66 0.68 14.30 16 8 O -0.57 -18.46 15.64 -3.03 -0.05 -18.51 16 9 C -0.12 -3.35 5.01 29.85 0.15 -3.20 16 10 C -0.10 -3.47 3.65 29.85 0.11 -3.36 16 11 C 0.51 22.34 7.53 87.66 0.66 23.00 16 12 O -0.57 -29.40 15.61 -3.04 -0.05 -29.45 16 13 N -0.56 -26.23 2.51 -635.28 -1.59 -27.82 16 14 C 0.27 14.99 5.07 85.63 0.43 15.42 16 15 C -0.54 -32.40 9.39 25.60 0.24 -32.16 16 16 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 17 C 0.01 0.61 5.46 84.66 0.46 1.07 16 18 N -0.93 -56.89 13.28 21.45 0.28 -56.61 16 19 Si 0.97 46.07 29.54 68.60 2.03 48.09 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 23 C 0.13 4.97 4.42 38.15 0.17 5.14 16 24 C -0.14 -4.70 8.46 22.39 0.19 -4.52 16 25 C -0.11 -2.79 10.04 22.25 0.22 -2.57 16 26 C -0.12 -2.80 10.04 22.29 0.22 -2.57 16 27 C -0.10 -2.67 10.04 22.25 0.22 -2.45 16 28 C -0.14 -4.78 9.64 22.39 0.22 -4.57 16 29 H 0.06 1.15 7.56 -2.39 -0.02 1.13 16 30 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.40 0.66 9.12 -74.05 -0.68 -0.02 16 35 H 0.41 6.77 8.38 -92.71 -0.78 6.00 16 36 H 0.11 2.81 8.14 -2.38 -0.02 2.79 16 37 H 0.10 2.88 8.04 -2.39 -0.02 2.86 16 38 H 0.10 3.30 6.95 -2.39 -0.02 3.28 16 39 H 0.10 3.21 7.97 -2.39 -0.02 3.19 16 40 H 0.01 0.49 7.49 -2.39 -0.02 0.48 16 41 H 0.02 1.21 7.83 -2.39 -0.02 1.19 16 42 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 43 H 0.11 3.94 7.90 -2.91 -0.02 3.92 16 44 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 45 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 46 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 47 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -81.00 398.96 1.33 -79.67 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: -0.47 Total: 23.68 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 5.27 Total: 5.07 kcal Atomic # 7 Polarization: -97.07 SS G_CDS: -3.55 Total: -100.62 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: -1.96 Total: -55.90 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -81.00 1.33 -79.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137748965.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.910 kcal (2) G-P(sol) polarization free energy of solvation -80.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds