Wall clock time and date at job start Tue Mar 31 2020 17:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47035 * 2 1 4 4 C 1.52998 * 109.47118 * 240.00127 * 2 1 3 5 5 N 1.46499 * 109.47560 * 64.99600 * 4 2 1 6 6 S 1.65595 * 120.00442 * 165.00048 * 5 4 2 7 7 O 1.42098 * 104.28159 * 181.07595 * 6 5 4 8 8 O 1.42108 * 104.27714 * 308.93318 * 6 5 4 9 9 C 1.81403 * 104.44841 * 65.00219 * 6 5 4 10 10 C 1.53005 * 109.47085 * 180.02562 * 9 6 5 11 11 C 1.52994 * 109.46999 * 179.97438 * 10 9 6 12 12 C 1.50697 * 109.47307 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99556 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00273 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99524 * 180.02562 * 14 12 11 16 16 Si 1.86790 * 119.99920 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47224 * 90.00060 * 16 14 12 18 18 H 1.48504 * 109.46931 * 210.00060 * 16 14 12 19 19 H 1.48497 * 109.47443 * 329.99979 * 16 14 12 20 20 C 1.52995 * 109.47172 * 119.99892 * 2 1 3 21 21 N 1.46899 * 109.47087 * 296.73365 * 20 2 1 22 22 C 1.47026 * 110.99643 * 170.45877 * 21 20 2 23 23 C 1.53103 * 109.25252 * 182.34792 * 22 21 20 24 24 O 1.43016 * 109.29441 * 303.22089 * 23 22 21 25 25 C 1.43013 * 113.74054 * 58.64922 * 24 23 22 26 26 C 1.47015 * 111.00000 * 294.13876 * 21 20 2 27 27 H 1.09005 * 109.47397 * 64.89892 * 1 2 3 28 28 H 1.09000 * 109.47296 * 184.89785 * 1 2 3 29 29 H 1.09003 * 109.47011 * 304.89922 * 1 2 3 30 30 H 1.08992 * 109.47112 * 185.00168 * 4 2 1 31 31 H 1.09001 * 109.46757 * 304.99879 * 4 2 1 32 32 H 0.96999 * 119.99761 * 345.00335 * 5 4 2 33 33 H 1.09000 * 109.47121 * 299.99938 * 9 6 5 34 34 H 1.08996 * 109.47080 * 60.00015 * 9 6 5 35 35 H 1.09000 * 109.46857 * 299.99813 * 10 9 6 36 36 H 1.08996 * 109.46890 * 60.00103 * 10 9 6 37 37 H 1.08996 * 109.47380 * 300.00124 * 11 10 9 38 38 H 1.09005 * 109.47014 * 60.00396 * 11 10 9 39 39 H 0.97000 * 119.99352 * 180.02562 * 15 14 12 40 40 H 1.08994 * 109.47429 * 176.73243 * 20 2 1 41 41 H 1.09003 * 109.47077 * 56.73582 * 20 2 1 42 42 H 1.09000 * 109.46701 * 62.43876 * 22 21 20 43 43 H 1.08996 * 109.54771 * 302.30817 * 22 21 20 44 44 H 1.08994 * 109.50256 * 183.26395 * 23 22 21 45 45 H 1.08997 * 109.50439 * 63.17992 * 23 22 21 46 46 H 1.09006 * 109.50641 * 61.26160 * 25 24 23 47 47 H 1.08995 * 109.50908 * 181.34781 * 25 24 23 48 48 H 1.09000 * 109.50111 * 57.67753 * 26 21 20 49 49 H 1.08992 * 109.50877 * 297.54104 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6524 0.0353 -2.4424 6 16 2.3698 -0.2907 -3.8989 7 8 1.7749 0.6353 -4.7977 8 8 3.7627 -0.2498 -3.6204 9 6 1.8486 -1.9833 -4.2913 10 6 2.4547 -2.4059 -5.6312 11 6 2.0156 -3.8337 -5.9618 12 6 2.6120 -4.2497 -7.2817 13 1 3.2417 -3.5644 -7.8297 14 6 2.3539 -5.5052 -7.7898 15 7 2.8749 -5.8684 -8.9415 16 14 1.2655 -6.6908 -6.8417 17 1 -0.1482 -6.5042 -7.2561 18 1 1.6856 -8.0859 -7.1288 19 1 1.3939 -6.4248 -5.3864 20 6 2.0400 -0.7212 1.2492 21 7 1.6158 0.0154 2.4473 22 6 1.8889 -0.7597 3.6665 23 6 1.3794 0.0172 4.8834 24 8 1.9952 1.3076 4.9118 25 6 1.7484 2.0894 3.7400 26 6 2.2626 1.3341 2.5116 27 1 -0.3634 0.4360 -0.9306 28 1 -0.3634 -1.0239 0.0877 29 1 -0.3633 0.5880 0.8429 30 1 3.1262 -0.7995 -1.2056 31 1 1.6053 -1.7198 -1.2951 32 1 0.9755 0.7272 -2.3793 33 1 2.1914 -2.6598 -3.5084 34 1 0.7612 -2.0230 -4.3554 35 1 2.1122 -1.7295 -6.4143 36 1 3.5420 -2.3663 -5.5666 37 1 2.3583 -4.5098 -5.1786 38 1 0.9282 -3.8737 -6.0262 39 1 2.6930 -6.7515 -9.2991 40 1 3.1284 -0.7722 1.2204 41 1 1.6297 -1.7306 1.2790 42 1 2.9627 -0.9214 3.7612 43 1 1.3791 -1.7214 3.6090 44 1 1.6314 -0.5265 5.7938 45 1 0.2976 0.1315 4.8153 46 1 0.6772 2.2640 3.6379 47 1 2.2664 3.0446 3.8239 48 1 2.0253 1.9000 1.6107 49 1 3.3423 1.2066 2.5884 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160376011.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:18 Heat of formation + Delta-G solvation = -130.163345 kcal Electronic energy + Delta-G solvation = -27026.763526 eV Core-core repulsion = 23115.535348 eV Total energy + Delta-G solvation = -3911.228178 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.14185 -37.88546 -36.94449 -35.85060 -35.60284 -34.83158 -32.45795 -32.23044 -31.61767 -28.40820 -28.31912 -26.64891 -24.56626 -24.26034 -23.62863 -21.11778 -20.60582 -20.29837 -19.27439 -17.57735 -17.31077 -16.91395 -16.57396 -16.35392 -16.04371 -15.77903 -15.53857 -15.37314 -15.21225 -14.73624 -14.42925 -14.21414 -14.05727 -13.65332 -13.40246 -12.94771 -12.91985 -12.55951 -12.36378 -12.16396 -12.08217 -12.03586 -11.94070 -11.87058 -11.84681 -11.60126 -11.51228 -11.27542 -11.09467 -11.00682 -10.96513 -10.88154 -10.13266 -10.11354 -9.95144 -9.83877 -9.41487 -9.26916 -8.87728 -8.60403 -6.09998 -4.09313 0.37526 2.74772 3.22925 3.24996 3.32530 3.34312 3.42422 3.86884 4.21189 4.34921 4.38620 4.41240 4.42897 4.53502 4.55118 4.67333 4.75876 4.82690 4.94172 4.98362 5.05754 5.07066 5.13396 5.19504 5.19784 5.23866 5.29491 5.33676 5.35136 5.45164 5.49060 5.58789 5.72003 5.73414 5.90364 6.00760 6.12159 6.24462 6.44332 6.45105 6.64879 6.66418 6.81906 7.10545 7.24561 7.69368 8.46008 8.94436 9.51002 11.03269 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018108 B = 0.002144 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.865671 B =13055.922102 C =14072.607908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 H 0.080 0.920 4 C 0.117 3.883 5 N -1.123 6.123 6 S 2.604 3.396 7 O -0.961 6.961 8 O -0.961 6.961 9 C -0.615 4.615 10 C -0.098 4.098 11 C -0.004 4.004 12 C -0.527 4.527 13 H 0.075 0.925 14 C 0.067 3.933 15 N -0.900 5.900 16 Si 0.881 3.119 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.266 1.266 20 C 0.058 3.942 21 N -0.533 5.533 22 C 0.017 3.983 23 C 0.064 3.936 24 O -0.387 6.387 25 C 0.064 3.936 26 C 0.012 3.988 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.414 0.586 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.020 0.980 38 H 0.016 0.984 39 H 0.264 0.736 40 H 0.041 0.959 41 H 0.082 0.918 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.097 0.903 48 H 0.090 0.910 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.647 13.283 28.671 32.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 H 0.098 0.902 4 C -0.010 4.010 5 N -0.882 5.882 6 S 2.699 3.301 7 O -0.952 6.952 8 O -0.950 6.950 9 C -0.747 4.747 10 C -0.137 4.137 11 C -0.043 4.043 12 C -0.565 4.565 13 H 0.093 0.907 14 C -0.135 4.135 15 N -0.538 5.538 16 Si 0.708 3.292 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.191 1.191 20 C -0.070 4.070 21 N -0.258 5.258 22 C -0.111 4.111 23 C -0.013 4.013 24 O -0.306 6.306 25 C -0.013 4.013 26 C -0.116 4.116 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.249 0.751 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.038 0.962 38 H 0.034 0.966 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.100 0.900 42 H 0.062 0.938 43 H 0.106 0.894 44 H 0.115 0.885 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.115 0.885 48 H 0.108 0.892 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.322 13.745 28.196 31.816 hybrid contribution -0.518 -1.369 0.347 1.504 sum -5.840 12.376 28.543 31.654 Atomic orbital electron populations 1.21736 0.93771 1.02408 1.01727 1.21334 0.97486 1.00218 0.92465 0.90180 1.21305 1.00541 0.94685 0.84436 1.55712 1.58065 1.50286 1.24171 1.05185 0.74566 0.77638 0.72677 1.93588 1.78402 1.60024 1.63145 1.93575 1.31057 1.86955 1.83463 1.30593 1.12047 1.22659 1.09358 1.21313 1.00317 1.01642 0.90450 1.19526 0.96424 0.90695 0.97649 1.21135 1.31246 1.00509 1.03629 0.90732 1.25036 0.95636 0.98031 0.94783 1.69915 1.44705 1.20497 1.18714 0.86763 0.81075 0.80394 0.80933 1.20232 1.21273 1.19085 1.22156 0.98303 0.97709 0.88858 1.62167 1.58328 1.03282 1.02030 1.22794 1.00055 0.97818 0.90457 1.22659 0.97412 0.83754 0.97488 1.87996 1.74868 1.27761 1.39928 1.22669 1.00761 0.94013 0.83875 1.22875 0.97331 0.91383 0.99999 0.92908 0.92533 0.91533 0.90171 0.91477 0.75095 0.85556 0.85262 0.90974 0.90966 0.96208 0.96619 0.92624 0.94036 0.89964 0.93820 0.89436 0.88471 0.92220 0.92230 0.88454 0.89163 0.93752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 8.93 37.16 0.33 -0.55 16 2 C -0.09 -0.62 2.39 -90.62 -0.22 -0.84 16 3 H 0.08 0.54 6.36 -51.93 -0.33 0.21 16 4 C 0.12 0.93 5.52 -4.04 -0.02 0.91 16 5 N -1.12 -10.55 5.74 -10.62 -0.06 -10.61 16 6 S 2.60 35.25 5.46 -107.50 -0.59 34.67 16 7 O -0.96 -16.06 18.08 -57.54 -1.04 -17.10 16 8 O -0.96 -16.00 17.50 -57.54 -1.01 -17.00 16 9 C -0.62 -8.50 6.07 37.16 0.23 -8.27 16 10 C -0.10 -1.87 5.16 -26.73 -0.14 -2.01 16 11 C 0.00 -0.10 4.04 -27.89 -0.11 -0.21 16 12 C -0.53 -14.94 9.66 -34.44 -0.33 -15.27 16 13 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 14 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 15 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 16 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 20 C 0.06 0.37 4.36 -3.83 -0.02 0.35 16 21 N -0.53 -3.45 4.20 -234.30 -0.98 -4.44 16 22 C 0.02 0.10 5.65 -3.70 -0.02 0.08 16 23 C 0.06 0.38 7.01 37.21 0.26 0.64 16 24 O -0.39 -3.15 10.83 -35.23 -0.38 -3.53 16 25 C 0.06 0.40 7.01 37.21 0.26 0.66 16 26 C 0.01 0.08 5.44 -3.71 -0.02 0.06 16 27 H 0.05 0.32 6.79 -51.93 -0.35 -0.03 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.44 7.84 -51.93 -0.41 0.03 16 30 H 0.08 0.69 7.69 -51.93 -0.40 0.29 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.41 3.25 7.34 -34.46 -0.25 2.99 16 33 H 0.13 1.48 8.14 -51.92 -0.42 1.06 16 34 H 0.13 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 38 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.04 0.28 8.12 -51.93 -0.42 -0.14 16 41 H 0.08 0.47 8.05 -51.93 -0.42 0.06 16 42 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.09 0.43 8.09 -51.93 -0.42 0.01 16 44 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.09 0.52 6.30 -51.93 -0.33 0.19 16 49 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 396.05 15.07 5.97 5.97 Total: -1.00 -36.17 396.05 -10.64 -46.82 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -8.76 Total: -1.94 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 0.10 Total: -22.62 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: -0.27 Total: -41.87 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -2.43 Total: -37.64 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Atomic # 16 Polarization: 35.25 SS G_CDS: -0.59 Total: 34.67 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.17 -10.64 -46.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160376011.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.348 kcal (2) G-P(sol) polarization free energy of solvation -36.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds