Wall clock time and date at job start Tue Mar 31 2020 17:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47035 * 2 1 4 4 C 1.52998 * 109.47118 * 240.00127 * 2 1 3 5 5 N 1.46499 * 109.47560 * 64.99600 * 4 2 1 6 6 S 1.65595 * 120.00442 * 165.00048 * 5 4 2 7 7 O 1.42098 * 104.28159 * 181.07595 * 6 5 4 8 8 O 1.42108 * 104.27714 * 308.93318 * 6 5 4 9 9 C 1.81403 * 104.44841 * 65.00219 * 6 5 4 10 10 C 1.53005 * 109.47085 * 180.02562 * 9 6 5 11 11 C 1.52994 * 109.46999 * 179.97438 * 10 9 6 12 12 C 1.50697 * 109.47307 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99556 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00273 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99524 * 180.02562 * 14 12 11 16 16 Si 1.86790 * 119.99920 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47224 * 90.00060 * 16 14 12 18 18 H 1.48504 * 109.46931 * 210.00060 * 16 14 12 19 19 H 1.48497 * 109.47443 * 329.99979 * 16 14 12 20 20 C 1.52995 * 109.47172 * 119.99892 * 2 1 3 21 21 N 1.46899 * 109.47087 * 296.73365 * 20 2 1 22 22 C 1.47026 * 110.99643 * 170.45877 * 21 20 2 23 23 C 1.53103 * 109.25252 * 182.34792 * 22 21 20 24 24 O 1.43016 * 109.29441 * 303.22089 * 23 22 21 25 25 C 1.43013 * 113.74054 * 58.64922 * 24 23 22 26 26 C 1.47015 * 111.00000 * 294.13876 * 21 20 2 27 27 H 1.09005 * 109.47397 * 64.89892 * 1 2 3 28 28 H 1.09000 * 109.47296 * 184.89785 * 1 2 3 29 29 H 1.09003 * 109.47011 * 304.89922 * 1 2 3 30 30 H 1.08992 * 109.47112 * 185.00168 * 4 2 1 31 31 H 1.09001 * 109.46757 * 304.99879 * 4 2 1 32 32 H 0.96999 * 119.99761 * 345.00335 * 5 4 2 33 33 H 1.09000 * 109.47121 * 299.99938 * 9 6 5 34 34 H 1.08996 * 109.47080 * 60.00015 * 9 6 5 35 35 H 1.09000 * 109.46857 * 299.99813 * 10 9 6 36 36 H 1.08996 * 109.46890 * 60.00103 * 10 9 6 37 37 H 1.08996 * 109.47380 * 300.00124 * 11 10 9 38 38 H 1.09005 * 109.47014 * 60.00396 * 11 10 9 39 39 H 0.97000 * 119.99352 * 180.02562 * 15 14 12 40 40 H 1.08994 * 109.47429 * 176.73243 * 20 2 1 41 41 H 1.09003 * 109.47077 * 56.73582 * 20 2 1 42 42 H 1.09000 * 109.46701 * 62.43876 * 22 21 20 43 43 H 1.08996 * 109.54771 * 302.30817 * 22 21 20 44 44 H 1.08994 * 109.50256 * 183.26395 * 23 22 21 45 45 H 1.08997 * 109.50439 * 63.17992 * 23 22 21 46 46 H 1.09006 * 109.50641 * 61.26160 * 25 24 23 47 47 H 1.08995 * 109.50908 * 181.34781 * 25 24 23 48 48 H 1.09000 * 109.50111 * 57.67753 * 26 21 20 49 49 H 1.08992 * 109.50877 * 297.54104 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6524 0.0353 -2.4424 6 16 2.3698 -0.2907 -3.8989 7 8 1.7749 0.6353 -4.7977 8 8 3.7627 -0.2498 -3.6204 9 6 1.8486 -1.9833 -4.2913 10 6 2.4547 -2.4059 -5.6312 11 6 2.0156 -3.8337 -5.9618 12 6 2.6120 -4.2497 -7.2817 13 1 3.2417 -3.5644 -7.8297 14 6 2.3539 -5.5052 -7.7898 15 7 2.8749 -5.8684 -8.9415 16 14 1.2655 -6.6908 -6.8417 17 1 -0.1482 -6.5042 -7.2561 18 1 1.6856 -8.0859 -7.1288 19 1 1.3939 -6.4248 -5.3864 20 6 2.0400 -0.7212 1.2492 21 7 1.6158 0.0154 2.4473 22 6 1.8889 -0.7597 3.6665 23 6 1.3794 0.0172 4.8834 24 8 1.9952 1.3076 4.9118 25 6 1.7484 2.0894 3.7400 26 6 2.2626 1.3341 2.5116 27 1 -0.3634 0.4360 -0.9306 28 1 -0.3634 -1.0239 0.0877 29 1 -0.3633 0.5880 0.8429 30 1 3.1262 -0.7995 -1.2056 31 1 1.6053 -1.7198 -1.2951 32 1 0.9755 0.7272 -2.3793 33 1 2.1914 -2.6598 -3.5084 34 1 0.7612 -2.0230 -4.3554 35 1 2.1122 -1.7295 -6.4143 36 1 3.5420 -2.3663 -5.5666 37 1 2.3583 -4.5098 -5.1786 38 1 0.9282 -3.8737 -6.0262 39 1 2.6930 -6.7515 -9.2991 40 1 3.1284 -0.7722 1.2204 41 1 1.6297 -1.7306 1.2790 42 1 2.9627 -0.9214 3.7612 43 1 1.3791 -1.7214 3.6090 44 1 1.6314 -0.5265 5.7938 45 1 0.2976 0.1315 4.8153 46 1 0.6772 2.2640 3.6379 47 1 2.2664 3.0446 3.8239 48 1 2.0253 1.9000 1.6107 49 1 3.3423 1.2066 2.5884 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160376011.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:17 Heat of formation + Delta-G solvation = -159.047602 kcal Electronic energy + Delta-G solvation = -27028.016041 eV Core-core repulsion = 23115.535348 eV Total energy + Delta-G solvation = -3912.480693 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.62651 -38.49795 -38.10404 -37.03974 -36.49707 -36.23105 -34.24416 -33.08447 -32.08182 -30.14710 -28.81323 -27.21865 -25.38785 -25.03634 -24.79472 -22.25884 -21.60077 -20.89715 -20.30381 -18.97772 -18.56603 -17.93328 -17.25436 -17.16110 -17.06860 -16.46404 -16.27582 -16.10684 -15.99506 -15.89468 -15.57975 -15.30979 -14.86217 -14.71100 -14.25991 -14.09755 -13.92177 -13.63586 -13.40836 -13.22120 -13.20499 -13.13046 -13.06182 -12.87869 -12.69109 -12.54351 -12.48780 -12.30341 -12.03598 -11.85137 -11.83253 -11.64016 -11.58298 -11.41923 -11.39819 -11.23838 -10.77482 -10.63382 -10.33785 -9.37004 -8.29849 -6.35880 -0.71961 1.37042 1.39763 1.51345 1.80927 2.36551 2.72709 2.80379 2.98403 3.05260 3.26048 3.69311 3.79365 3.89333 3.93879 3.95778 4.03672 4.06873 4.21705 4.29320 4.34911 4.36471 4.48191 4.52484 4.60781 4.64313 4.66465 4.75653 4.80870 4.84101 4.87332 4.90146 4.94758 4.97428 4.99712 5.06948 5.21078 5.34752 5.38986 5.46654 5.54047 5.62826 5.96409 5.98422 6.13348 6.20007 6.25278 6.72514 7.28684 8.87111 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018108 B = 0.002144 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.865671 B =13055.922102 C =14072.607908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 H 0.077 0.923 4 C 0.108 3.892 5 N -1.107 6.107 6 S 2.626 3.374 7 O -0.996 6.996 8 O -0.995 6.995 9 C -0.609 4.609 10 C -0.105 4.105 11 C -0.005 4.005 12 C -0.544 4.544 13 H 0.028 0.972 14 C -0.002 4.002 15 N -0.953 5.953 16 Si 0.957 3.043 17 H -0.265 1.265 18 H -0.286 1.286 19 H -0.236 1.236 20 C 0.059 3.941 21 N -0.535 5.535 22 C 0.018 3.982 23 C 0.061 3.939 24 O -0.410 6.410 25 C 0.062 3.938 26 C 0.013 3.987 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.424 0.576 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.033 0.967 38 H 0.031 0.969 39 H 0.267 0.733 40 H 0.035 0.965 41 H 0.092 0.908 42 H 0.034 0.966 43 H 0.101 0.899 44 H 0.110 0.890 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.107 0.893 48 H 0.096 0.904 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.777 12.519 31.482 34.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 H 0.095 0.905 4 C -0.019 4.019 5 N -0.870 5.870 6 S 2.722 3.278 7 O -0.987 6.987 8 O -0.985 6.985 9 C -0.740 4.740 10 C -0.144 4.144 11 C -0.044 4.044 12 C -0.583 4.583 13 H 0.047 0.953 14 C -0.198 4.198 15 N -0.593 5.593 16 Si 0.780 3.220 17 H -0.190 1.190 18 H -0.212 1.212 19 H -0.159 1.159 20 C -0.070 4.070 21 N -0.260 5.260 22 C -0.111 4.111 23 C -0.015 4.015 24 O -0.329 6.329 25 C -0.014 4.014 26 C -0.115 4.115 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.262 0.738 33 H 0.174 0.826 34 H 0.175 0.825 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.110 0.890 42 H 0.053 0.947 43 H 0.119 0.881 44 H 0.128 0.872 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.125 0.875 48 H 0.114 0.886 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -7.452 13.014 31.018 34.453 hybrid contribution 0.203 -1.066 -0.543 1.214 sum -7.249 11.948 30.475 33.527 Atomic orbital electron populations 1.21707 0.93237 1.02616 1.01741 1.21259 0.97754 0.99919 0.91897 0.90512 1.21567 1.00556 0.95760 0.83995 1.55274 1.57978 1.50638 1.23067 1.04253 0.73639 0.77064 0.72872 1.93538 1.78779 1.61324 1.65011 1.93534 1.33459 1.87346 1.84136 1.30494 1.13536 1.23092 1.06867 1.21181 1.00240 0.99510 0.93487 1.19505 0.96878 0.93083 0.94887 1.21572 1.30769 1.00077 1.05837 0.95333 1.26154 0.97448 1.00372 0.95857 1.70094 1.46858 1.21323 1.21025 0.85561 0.78768 0.77008 0.80712 1.19011 1.21225 1.15943 1.22157 0.97991 0.98149 0.88657 1.62198 1.58200 1.03341 1.02288 1.22823 0.99648 0.98342 0.90238 1.22789 0.97462 0.83141 0.98156 1.87964 1.75368 1.28753 1.40799 1.22760 1.01094 0.94248 0.83342 1.22869 0.96614 0.91650 1.00349 0.92658 0.92140 0.91832 0.90835 0.89164 0.73850 0.82644 0.82514 0.92027 0.91947 0.94824 0.95064 0.92470 0.94664 0.88954 0.94740 0.88095 0.87218 0.91932 0.91899 0.87521 0.88561 0.94919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.93 71.98 0.64 -0.67 16 2 C -0.09 -0.93 2.39 -10.80 -0.03 -0.96 16 3 H 0.08 0.88 6.36 -2.39 -0.02 0.86 16 4 C 0.11 1.39 5.52 86.38 0.48 1.86 16 5 N -1.11 -17.91 5.74 -187.50 -1.08 -18.98 16 6 S 2.63 66.95 5.46 -56.49 -0.31 66.65 16 7 O -1.00 -32.47 18.08 -127.65 -2.31 -34.78 16 8 O -0.99 -32.39 17.50 -127.65 -2.23 -34.62 16 9 C -0.61 -14.93 6.07 71.98 0.44 -14.50 16 10 C -0.10 -3.92 5.16 30.59 0.16 -3.76 16 11 C 0.00 -0.22 4.04 29.84 0.12 -0.10 16 12 C -0.54 -31.42 9.66 25.60 0.25 -31.18 16 13 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 14 C 0.00 -0.10 5.47 84.65 0.46 0.36 16 15 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 16 Si 0.96 42.78 27.47 68.60 1.88 44.66 16 17 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 18 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 19 H -0.24 -9.37 6.54 99.48 0.65 -8.72 16 20 C 0.06 0.61 4.36 86.30 0.38 0.99 16 21 N -0.54 -5.98 4.20 -895.20 -3.76 -9.73 16 22 C 0.02 0.18 5.65 86.31 0.49 0.67 16 23 C 0.06 0.64 7.01 72.02 0.50 1.15 16 24 O -0.41 -6.29 10.83 -148.98 -1.61 -7.90 16 25 C 0.06 0.71 7.01 72.02 0.50 1.22 16 26 C 0.01 0.15 5.44 86.31 0.47 0.62 16 27 H 0.05 0.51 6.79 -2.38 -0.02 0.49 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.67 7.84 -2.39 -0.02 0.65 16 30 H 0.07 1.09 7.69 -2.39 -0.02 1.07 16 31 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.42 5.52 7.34 -96.75 -0.71 4.81 16 33 H 0.16 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.16 3.03 8.14 -2.39 -0.02 3.01 16 35 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.03 1.40 7.20 -2.39 -0.02 1.39 16 38 H 0.03 1.29 7.57 -2.38 -0.02 1.28 16 39 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 40 H 0.04 0.42 8.12 -2.39 -0.02 0.40 16 41 H 0.09 0.78 8.05 -2.39 -0.02 0.76 16 42 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.10 0.75 8.09 -2.39 -0.02 0.73 16 44 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 46 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 47 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.10 0.97 6.30 -2.39 -0.02 0.96 16 49 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -80.16 396.05 -4.10 -84.26 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.15 Total: 14.48 kcal Atomic # 6 Polarization: -49.15 SS G_CDS: 4.86 Total: -44.29 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -4.53 Total: -88.46 kcal Atomic # 8 Polarization: -71.15 SS G_CDS: -6.15 Total: -77.30 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.88 Total: 44.66 kcal Atomic # 16 Polarization: 66.95 SS G_CDS: -0.31 Total: 66.65 kcal Total: -80.16 -4.10 -84.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160376011.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.789 kcal (2) G-P(sol) polarization free energy of solvation -80.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds