Wall clock time and date at job start Tue Mar 31 2020 18:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46698 * 2 1 4 4 N 1.46500 * 109.47317 * 240.00048 * 2 1 3 5 5 C 1.34773 * 120.00050 * 85.00003 * 4 2 1 6 6 O 1.21514 * 120.00115 * 359.97438 * 5 4 2 7 7 O 1.34635 * 119.99822 * 180.02562 * 5 4 2 8 8 C 1.45208 * 116.99647 * 180.02562 * 7 5 4 9 9 C 1.50706 * 109.46853 * 179.97438 * 8 7 5 10 10 C 1.38236 * 119.99544 * 269.72402 * 9 8 7 11 11 C 1.38240 * 119.99451 * 179.76654 * 10 9 8 12 12 C 1.38231 * 120.00327 * 0.50873 * 11 10 9 13 13 C 1.38238 * 119.99729 * 359.74509 * 12 11 10 14 14 C 1.38231 * 120.00373 * 89.99929 * 9 8 7 15 15 C 1.50696 * 109.46999 * 119.99757 * 2 1 3 16 16 O 1.21284 * 120.00109 * 120.00318 * 15 2 1 17 17 N 1.34777 * 120.00137 * 300.00533 * 15 2 1 18 18 C 1.46506 * 119.99873 * 180.02562 * 17 15 2 19 19 C 1.53002 * 109.47035 * 179.97438 * 18 17 15 20 20 C 1.52996 * 109.46969 * 179.97438 * 19 18 17 21 21 C 1.50699 * 109.46861 * 179.97438 * 20 19 18 22 22 H 1.08003 * 119.99962 * 359.97438 * 21 20 19 23 23 C 1.37884 * 120.00200 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99569 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00031 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47485 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.46928 * 119.99926 * 25 23 21 28 28 H 1.48505 * 109.46854 * 239.99744 * 25 23 21 29 29 H 1.08992 * 109.47513 * 299.99609 * 1 2 3 30 30 H 1.09002 * 109.46838 * 60.00504 * 1 2 3 31 31 H 1.09004 * 109.47006 * 180.02562 * 1 2 3 32 32 H 0.97002 * 120.00030 * 264.99904 * 4 2 1 33 33 H 1.08994 * 109.47065 * 299.99251 * 8 7 5 34 34 H 1.09000 * 109.47117 * 60.00117 * 8 7 5 35 35 H 1.08000 * 120.00095 * 0.02562 * 10 9 8 36 36 H 1.08005 * 119.99698 * 180.23007 * 11 10 9 37 37 H 1.07999 * 120.00299 * 179.72877 * 12 11 10 38 38 H 1.07999 * 120.00267 * 179.97438 * 13 12 11 39 39 H 1.08008 * 119.99570 * 359.97438 * 14 9 8 40 40 H 0.96999 * 120.00047 * 359.97438 * 17 15 2 41 41 H 1.09004 * 109.47073 * 299.99562 * 18 17 15 42 42 H 1.09000 * 109.47212 * 59.99645 * 18 17 15 43 43 H 1.09004 * 109.46930 * 299.99770 * 19 18 17 44 44 H 1.09004 * 109.47059 * 59.99372 * 19 18 17 45 45 H 1.08992 * 109.47534 * 299.99582 * 20 19 18 46 46 H 1.08996 * 109.47134 * 60.00388 * 20 19 18 47 47 H 0.97002 * 119.99797 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8577 1.1606 -2.4118 7 8 2.5955 -0.6531 -3.4565 8 6 2.7095 0.1338 -4.6716 9 6 3.2237 -0.7381 -5.7881 10 6 4.5838 -0.8447 -6.0113 11 6 5.0557 -1.6482 -7.0324 12 6 4.1672 -2.3367 -7.8370 13 6 2.8069 -2.2259 -7.6171 14 6 2.3352 -1.4266 -6.5927 15 6 2.0323 -0.7103 1.2305 16 8 2.7296 -1.6964 1.1193 17 7 1.7066 -0.2499 2.4546 18 6 2.1954 -0.9402 3.6508 19 6 1.6858 -0.2187 4.9000 20 6 2.1957 -0.9400 6.1492 21 6 1.6942 -0.2289 7.3796 22 1 1.0741 0.6498 7.2805 23 6 2.0278 -0.6996 8.6320 24 7 2.7833 -1.7693 8.7527 25 14 1.4056 0.1814 10.1572 26 1 0.5808 1.3482 9.7530 27 1 0.5810 -0.7519 10.9660 28 1 2.5608 0.6485 10.9649 29 1 -0.3634 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 2.2491 -1.6318 -1.1526 33 1 1.7305 0.5300 -4.9410 34 1 3.4026 0.9587 -4.5065 35 1 5.2778 -0.3036 -5.3853 36 1 6.1184 -1.7344 -7.2045 37 1 4.5357 -2.9610 -8.6375 38 1 2.1126 -2.7635 -8.2459 39 1 1.2724 -1.3401 -6.4208 40 1 1.1492 0.5389 2.5435 41 1 1.8325 -1.9681 3.6509 42 1 3.2854 -0.9398 3.6506 43 1 2.0490 0.8090 4.8996 44 1 0.5957 -0.2187 4.9003 45 1 1.8321 -1.9675 6.1494 46 1 3.2857 -0.9402 6.1491 47 1 3.0177 -2.1006 9.6337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171594532.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:39 Heat of formation + Delta-G solvation = -109.424229 kcal Electronic energy + Delta-G solvation = -26744.842040 eV Core-core repulsion = 22699.069226 eV Total energy + Delta-G solvation = -4045.772814 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.95601 -39.94013 -39.42244 -37.05704 -35.67463 -35.10421 -33.46223 -32.68102 -31.63515 -31.37614 -30.46781 -26.95990 -26.88459 -24.80775 -23.10688 -23.06250 -21.92481 -21.41863 -20.79270 -20.16834 -19.22241 -17.67079 -17.04295 -16.85065 -16.78591 -16.34223 -15.95969 -15.70870 -15.49458 -15.34933 -14.72272 -14.47317 -14.28274 -14.02904 -13.90290 -13.64634 -13.49282 -13.36183 -12.83035 -12.73429 -12.62737 -12.33356 -11.97938 -11.88162 -11.74102 -11.58854 -11.56236 -10.95711 -10.94945 -10.88956 -10.79232 -10.60485 -10.06881 -9.92729 -9.62566 -9.39850 -9.38338 -9.35598 -9.14027 -8.94038 -8.40499 -6.04939 -4.08120 0.66097 0.94148 1.88651 2.47331 2.58049 3.15999 3.28151 3.35020 3.36134 3.39484 3.91742 4.31499 4.33241 4.41678 4.51579 4.55768 4.66198 4.71618 4.76901 4.84619 4.92507 5.04344 5.17331 5.27102 5.31171 5.44420 5.47158 5.56446 5.62248 5.69767 5.81932 5.90037 5.95919 6.04072 6.08204 6.08309 6.10126 6.32890 6.49638 6.52787 6.73167 6.93775 7.12633 7.48894 7.59824 7.71407 7.93467 8.04761 8.13600 8.34519 8.98720 9.56449 11.06330 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032636 B = 0.001445 C = 0.001413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.740607 B =19372.223392 C =19811.079721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 H 0.118 0.882 4 N -0.691 5.691 5 C 0.654 3.346 6 O -0.574 6.574 7 O -0.362 6.362 8 C 0.130 3.870 9 C -0.100 4.100 10 C -0.093 4.093 11 C -0.124 4.124 12 C -0.109 4.109 13 C -0.125 4.125 14 C -0.093 4.093 15 C 0.506 3.494 16 O -0.538 6.538 17 N -0.716 5.716 18 C 0.116 3.884 19 C -0.121 4.121 20 C 0.023 3.977 21 C -0.523 4.523 22 H 0.056 0.944 23 C 0.057 3.943 24 N -0.893 5.893 25 Si 0.893 3.107 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.417 0.583 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.401 0.599 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.381 2.159 -33.567 33.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.136 0.864 4 N -0.351 5.351 5 C 0.406 3.594 6 O -0.463 6.463 7 O -0.277 6.277 8 C 0.055 3.945 9 C -0.100 4.100 10 C -0.111 4.111 11 C -0.142 4.142 12 C -0.127 4.127 13 C -0.142 4.142 14 C -0.111 4.111 15 C 0.290 3.710 16 O -0.415 6.415 17 N -0.367 5.367 18 C -0.006 4.006 19 C -0.159 4.159 20 C -0.015 4.015 21 C -0.561 4.561 22 H 0.074 0.926 23 C -0.144 4.144 24 N -0.532 5.532 25 Si 0.721 3.279 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.210 1.210 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.255 0.745 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.236 0.764 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.912 1.915 -33.591 33.658 hybrid contribution -0.409 0.419 0.996 1.156 sum -1.321 2.334 -32.594 32.705 Atomic orbital electron populations 1.22187 0.92409 1.03562 1.03920 1.20771 0.95794 0.97825 0.82178 0.86404 1.44319 1.69451 1.15183 1.06186 1.17947 0.76739 0.83552 0.81136 1.91004 1.55553 1.14680 1.85108 1.86323 1.79604 1.43517 1.18223 1.21728 1.02289 0.91653 0.78785 1.19530 0.93920 1.00143 0.96390 1.21147 0.94649 0.97952 0.97321 1.21194 1.00042 0.97215 0.95724 1.21272 0.93483 0.98764 0.99180 1.21181 0.95799 0.99121 0.98148 1.21121 0.99714 0.95451 0.94852 1.20393 0.80783 0.84965 0.84869 1.90723 1.37924 1.26287 1.86558 1.46131 1.52918 1.31979 1.05698 1.21727 0.99440 0.96616 0.82859 1.21906 1.00304 0.99587 0.94152 1.19036 0.96716 0.95708 0.89992 1.21237 1.31680 1.12306 0.90889 0.92555 1.25030 0.95133 0.95052 0.99226 1.69976 1.36792 1.22957 1.23500 0.86526 0.78644 0.79670 0.83087 1.19734 1.20995 1.21001 0.90290 0.90686 0.91413 0.74509 0.90062 0.90051 0.85614 0.85621 0.85792 0.85661 0.85677 0.76421 0.91468 0.91524 0.92587 0.92581 0.96230 0.96244 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.38 37.16 0.35 -1.04 16 2 C 0.14 1.51 2.98 -69.08 -0.21 1.30 16 3 H 0.12 1.22 7.58 -51.93 -0.39 0.83 16 4 N -0.69 -7.79 4.96 -59.87 -0.30 -8.09 16 5 C 0.65 7.89 8.71 54.05 0.47 8.36 16 6 O -0.57 -8.01 15.80 -19.28 -0.30 -8.31 16 7 O -0.36 -3.97 10.25 -40.31 -0.41 -4.38 16 8 C 0.13 1.13 5.60 36.01 0.20 1.33 16 9 C -0.10 -0.80 5.52 -104.62 -0.58 -1.38 16 10 C -0.09 -0.69 9.70 -39.58 -0.38 -1.07 16 11 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 12 C -0.11 -0.66 10.05 -39.58 -0.40 -1.05 16 13 C -0.12 -0.78 10.05 -39.58 -0.40 -1.17 16 14 C -0.09 -0.67 9.70 -39.59 -0.38 -1.05 16 15 C 0.51 6.75 7.22 -10.99 -0.08 6.67 16 16 O -0.54 -9.10 15.84 5.55 0.09 -9.02 16 17 N -0.72 -9.22 5.45 -60.29 -0.33 -9.54 16 18 C 0.12 1.90 5.67 -4.04 -0.02 1.88 16 19 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 20 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 21 C -0.52 -14.33 9.11 -34.44 -0.31 -14.65 16 22 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 23 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 24 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 25 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 H 0.08 0.55 7.56 -51.93 -0.39 0.16 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.42 4.68 7.90 -40.82 -0.32 4.36 16 33 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 34 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 35 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.13 0.57 8.06 -52.48 -0.42 0.14 16 37 H 0.12 0.48 8.06 -52.49 -0.42 0.06 16 38 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 39 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 40 H 0.40 4.02 7.89 -40.82 -0.32 3.70 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 404.45 15.07 6.09 6.09 Total: -1.00 -33.81 404.45 -9.27 -43.08 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.31 Total: 3.22 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -2.52 Total: -3.53 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.11 Total: -43.37 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.63 Total: -21.71 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.81 -9.27 -43.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171594532.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.341 kcal (2) G-P(sol) polarization free energy of solvation -33.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds