Wall clock time and date at job start Tue Mar 31 2020 18:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46698 * 2 1 4 4 N 1.46500 * 109.47317 * 240.00048 * 2 1 3 5 5 C 1.34773 * 120.00050 * 85.00003 * 4 2 1 6 6 O 1.21514 * 120.00115 * 359.97438 * 5 4 2 7 7 O 1.34635 * 119.99822 * 180.02562 * 5 4 2 8 8 C 1.45208 * 116.99647 * 180.02562 * 7 5 4 9 9 C 1.50706 * 109.46853 * 179.97438 * 8 7 5 10 10 C 1.38236 * 119.99544 * 269.72402 * 9 8 7 11 11 C 1.38240 * 119.99451 * 179.76654 * 10 9 8 12 12 C 1.38231 * 120.00327 * 0.50873 * 11 10 9 13 13 C 1.38238 * 119.99729 * 359.74509 * 12 11 10 14 14 C 1.38231 * 120.00373 * 89.99929 * 9 8 7 15 15 C 1.50696 * 109.46999 * 119.99757 * 2 1 3 16 16 O 1.21284 * 120.00109 * 120.00318 * 15 2 1 17 17 N 1.34777 * 120.00137 * 300.00533 * 15 2 1 18 18 C 1.46506 * 119.99873 * 180.02562 * 17 15 2 19 19 C 1.53002 * 109.47035 * 179.97438 * 18 17 15 20 20 C 1.52996 * 109.46969 * 179.97438 * 19 18 17 21 21 C 1.50699 * 109.46861 * 179.97438 * 20 19 18 22 22 H 1.08003 * 119.99962 * 359.97438 * 21 20 19 23 23 C 1.37884 * 120.00200 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99569 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00031 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47485 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.46928 * 119.99926 * 25 23 21 28 28 H 1.48505 * 109.46854 * 239.99744 * 25 23 21 29 29 H 1.08992 * 109.47513 * 299.99609 * 1 2 3 30 30 H 1.09002 * 109.46838 * 60.00504 * 1 2 3 31 31 H 1.09004 * 109.47006 * 180.02562 * 1 2 3 32 32 H 0.97002 * 120.00030 * 264.99904 * 4 2 1 33 33 H 1.08994 * 109.47065 * 299.99251 * 8 7 5 34 34 H 1.09000 * 109.47117 * 60.00117 * 8 7 5 35 35 H 1.08000 * 120.00095 * 0.02562 * 10 9 8 36 36 H 1.08005 * 119.99698 * 180.23007 * 11 10 9 37 37 H 1.07999 * 120.00299 * 179.72877 * 12 11 10 38 38 H 1.07999 * 120.00267 * 179.97438 * 13 12 11 39 39 H 1.08008 * 119.99570 * 359.97438 * 14 9 8 40 40 H 0.96999 * 120.00047 * 359.97438 * 17 15 2 41 41 H 1.09004 * 109.47073 * 299.99562 * 18 17 15 42 42 H 1.09000 * 109.47212 * 59.99645 * 18 17 15 43 43 H 1.09004 * 109.46930 * 299.99770 * 19 18 17 44 44 H 1.09004 * 109.47059 * 59.99372 * 19 18 17 45 45 H 1.08992 * 109.47534 * 299.99582 * 20 19 18 46 46 H 1.08996 * 109.47134 * 60.00388 * 20 19 18 47 47 H 0.97002 * 119.99797 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8577 1.1606 -2.4118 7 8 2.5955 -0.6531 -3.4565 8 6 2.7095 0.1338 -4.6716 9 6 3.2237 -0.7381 -5.7881 10 6 4.5838 -0.8447 -6.0113 11 6 5.0557 -1.6482 -7.0324 12 6 4.1672 -2.3367 -7.8370 13 6 2.8069 -2.2259 -7.6171 14 6 2.3352 -1.4266 -6.5927 15 6 2.0323 -0.7103 1.2305 16 8 2.7296 -1.6964 1.1193 17 7 1.7066 -0.2499 2.4546 18 6 2.1954 -0.9402 3.6508 19 6 1.6858 -0.2187 4.9000 20 6 2.1957 -0.9400 6.1492 21 6 1.6942 -0.2289 7.3796 22 1 1.0741 0.6498 7.2805 23 6 2.0278 -0.6996 8.6320 24 7 2.7833 -1.7693 8.7527 25 14 1.4056 0.1814 10.1572 26 1 0.5808 1.3482 9.7530 27 1 0.5810 -0.7519 10.9660 28 1 2.5608 0.6485 10.9649 29 1 -0.3634 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 2.2491 -1.6318 -1.1526 33 1 1.7305 0.5300 -4.9410 34 1 3.4026 0.9587 -4.5065 35 1 5.2778 -0.3036 -5.3853 36 1 6.1184 -1.7344 -7.2045 37 1 4.5357 -2.9610 -8.6375 38 1 2.1126 -2.7635 -8.2459 39 1 1.2724 -1.3401 -6.4208 40 1 1.1492 0.5389 2.5435 41 1 1.8325 -1.9681 3.6509 42 1 3.2854 -0.9398 3.6506 43 1 2.0490 0.8090 4.8996 44 1 0.5957 -0.2187 4.9003 45 1 1.8321 -1.9675 6.1494 46 1 3.2857 -0.9402 6.1491 47 1 3.0177 -2.1006 9.6337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171594532.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:38 Heat of formation + Delta-G solvation = -131.397823 kcal Electronic energy + Delta-G solvation = -26745.794886 eV Core-core repulsion = 22699.069226 eV Total energy + Delta-G solvation = -4046.725660 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.87853 -40.91326 -40.06045 -37.94141 -37.04241 -36.12724 -35.25512 -33.44555 -33.04058 -31.85494 -31.54998 -28.58443 -27.57824 -25.94254 -24.64485 -23.54756 -22.72660 -22.32231 -22.16919 -21.28055 -20.24250 -18.62856 -18.34793 -17.80716 -17.69155 -17.52678 -17.08446 -16.79650 -16.46656 -16.14146 -16.03490 -15.73674 -15.53016 -14.90538 -14.54554 -14.50448 -14.28911 -14.24726 -13.93627 -13.79616 -13.73056 -13.40326 -13.36612 -13.32272 -12.78403 -12.71449 -12.53661 -12.34268 -12.13679 -12.08802 -11.81666 -11.70925 -11.66334 -11.58786 -11.22264 -10.97730 -10.54901 -10.45881 -10.16211 -9.87783 -9.87439 -8.18757 -6.29719 0.09595 0.44826 1.07987 1.41817 1.42436 1.43083 1.55812 1.61320 2.11076 2.43185 2.76449 3.15576 3.17858 3.51065 3.71187 3.79546 3.92315 4.02003 4.08238 4.16760 4.22041 4.23875 4.24312 4.29151 4.56815 4.57410 4.59580 4.68754 4.74040 4.95980 4.96277 4.98547 5.05214 5.10053 5.16374 5.19329 5.25747 5.37319 5.49838 5.54127 5.55878 5.56872 5.72911 5.86033 6.02826 6.20565 6.23403 6.43067 6.88367 7.07736 7.13831 7.40063 8.93397 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032636 B = 0.001445 C = 0.001413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.740607 B =19372.223392 C =19811.079721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.149 3.851 3 H 0.126 0.874 4 N -0.690 5.690 5 C 0.655 3.345 6 O -0.594 6.594 7 O -0.368 6.368 8 C 0.128 3.872 9 C -0.116 4.116 10 C -0.108 4.108 11 C -0.132 4.132 12 C -0.113 4.113 13 C -0.130 4.130 14 C -0.105 4.105 15 C 0.509 3.491 16 O -0.576 6.576 17 N -0.703 5.703 18 C 0.130 3.870 19 C -0.103 4.103 20 C 0.022 3.978 21 C -0.539 4.539 22 H 0.067 0.933 23 C -0.003 4.003 24 N -0.935 5.935 25 Si 0.965 3.035 26 H -0.258 1.258 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.417 0.583 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.130 0.870 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.135 0.865 40 H 0.419 0.581 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.068 0.932 44 H 0.071 0.929 45 H -0.006 1.006 46 H -0.008 1.008 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.619 3.307 -34.557 34.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.042 3.958 3 H 0.144 0.856 4 N -0.351 5.351 5 C 0.408 3.592 6 O -0.485 6.485 7 O -0.282 6.282 8 C 0.054 3.946 9 C -0.116 4.116 10 C -0.126 4.126 11 C -0.149 4.149 12 C -0.130 4.130 13 C -0.148 4.148 14 C -0.123 4.123 15 C 0.295 3.705 16 O -0.455 6.455 17 N -0.355 5.355 18 C 0.006 3.994 19 C -0.141 4.141 20 C -0.016 4.016 21 C -0.578 4.578 22 H 0.085 0.915 23 C -0.200 4.200 24 N -0.575 5.575 25 Si 0.790 3.210 26 H -0.181 1.181 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.118 0.882 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.255 0.745 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.148 0.852 36 H 0.161 0.839 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.152 0.848 40 H 0.257 0.743 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.012 0.988 46 H 0.010 0.990 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.176 3.094 -34.602 34.808 hybrid contribution 0.024 0.011 1.226 1.227 sum -2.153 3.105 -33.376 33.589 Atomic orbital electron populations 1.22183 0.90364 1.03909 1.05022 1.20801 0.97152 0.97374 0.80463 0.85622 1.44383 1.69263 1.15164 1.06243 1.17986 0.76483 0.83281 0.81425 1.90982 1.56589 1.15480 1.85485 1.86335 1.79266 1.43988 1.18582 1.21882 1.02725 0.91779 0.78189 1.19586 0.94454 1.00979 0.96592 1.21338 0.94666 0.98562 0.98036 1.21480 1.01220 0.96851 0.95393 1.21623 0.93443 0.98537 0.99443 1.21494 0.96483 0.98821 0.98003 1.21341 1.00222 0.95589 0.95127 1.20824 0.79847 0.84360 0.85474 1.90714 1.39617 1.28113 1.87090 1.45848 1.52892 1.32256 1.04548 1.21294 0.98443 0.96127 0.83535 1.21612 1.01009 0.99405 0.92080 1.18959 0.95005 0.95003 0.92638 1.21729 1.31473 1.12619 0.91931 0.91476 1.25997 0.95317 0.95799 1.02911 1.70116 1.38312 1.24734 1.24361 0.85394 0.78139 0.78761 0.78711 1.18147 1.20662 1.20753 0.88162 0.90583 0.91454 0.74530 0.89483 0.90016 0.85232 0.83890 0.83545 0.83621 0.84757 0.74337 0.92631 0.93062 0.91304 0.91000 0.98799 0.98992 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.38 71.98 0.68 -1.66 16 2 C 0.15 2.96 2.98 44.24 0.13 3.09 16 3 H 0.13 2.37 7.58 -2.39 -0.02 2.35 16 4 N -0.69 -15.13 4.96 -573.74 -2.84 -17.98 16 5 C 0.66 15.51 8.71 129.79 1.13 16.64 16 6 O -0.59 -16.16 15.80 19.80 0.31 -15.85 16 7 O -0.37 -8.01 10.25 -55.45 -0.57 -8.58 16 8 C 0.13 2.22 5.60 71.24 0.40 2.62 16 9 C -0.12 -1.84 5.52 -19.86 -0.11 -1.95 16 10 C -0.11 -1.58 9.70 22.27 0.22 -1.37 16 11 C -0.13 -1.56 10.05 22.27 0.22 -1.34 16 12 C -0.11 -1.18 10.05 22.27 0.22 -0.95 16 13 C -0.13 -1.44 10.05 22.27 0.22 -1.22 16 14 C -0.10 -1.43 9.70 22.27 0.22 -1.21 16 15 C 0.51 13.06 7.22 87.66 0.63 13.69 16 16 O -0.58 -19.47 15.84 -3.04 -0.05 -19.52 16 17 N -0.70 -16.96 5.45 -463.04 -2.52 -19.48 16 18 C 0.13 4.21 5.67 86.38 0.49 4.70 16 19 C -0.10 -3.73 5.27 30.59 0.16 -3.57 16 20 C 0.02 1.09 4.97 29.85 0.15 1.24 16 21 C -0.54 -29.46 9.11 25.60 0.23 -29.23 16 22 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 23 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 24 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 25 Si 0.97 43.24 29.54 68.60 2.03 45.27 16 26 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 27 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 28 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 29 H 0.10 1.07 7.56 -2.39 -0.02 1.05 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.42 9.28 7.90 -92.71 -0.73 8.55 16 33 H 0.09 1.37 8.08 -2.39 -0.02 1.35 16 34 H 0.08 1.37 8.08 -2.39 -0.02 1.35 16 35 H 0.13 1.66 8.06 -2.91 -0.02 1.63 16 36 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 37 H 0.15 0.79 8.06 -2.91 -0.02 0.77 16 38 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 39 H 0.13 1.45 8.06 -2.91 -0.02 1.43 16 40 H 0.42 7.22 7.89 -92.71 -0.73 6.49 16 41 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 42 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 44 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 45 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 46 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 47 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -73.34 404.45 1.62 -71.73 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -0.48 Total: 20.73 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 5.46 Total: -0.19 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -5.08 Total: -93.58 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -0.30 Total: -43.95 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -73.34 1.62 -71.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171594532.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.672 kcal (2) G-P(sol) polarization free energy of solvation -73.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds