Wall clock time and date at job start Tue Mar 31 2020 17:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46899 * 2 1 4 4 O 1.45192 * 109.47068 * 119.99953 * 2 1 3 5 5 C 1.34229 * 116.99972 * 150.00070 * 4 2 1 6 6 O 1.20823 * 120.00014 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99939 * 180.02562 * 5 4 2 8 8 H 1.09002 * 109.46881 * 299.99453 * 7 5 4 9 9 C 1.53000 * 109.47337 * 60.00019 * 7 5 4 10 10 C 1.53002 * 109.46944 * 179.97438 * 7 5 4 11 11 N 1.46502 * 109.47169 * 174.99916 * 10 7 5 12 12 C 1.34770 * 120.00102 * 179.72540 * 11 10 7 13 13 O 1.21588 * 120.00213 * 0.27389 * 12 11 10 14 14 N 1.34776 * 120.00049 * 180.27576 * 12 11 10 15 15 C 1.39243 * 119.99863 * 175.70980 * 14 12 11 16 16 C 1.39484 * 119.83394 * 215.01826 * 15 14 12 17 17 C 1.36372 * 120.17030 * 179.76222 * 16 15 14 18 18 C 1.40868 * 119.82819 * 0.53512 * 17 16 15 19 19 C 1.41154 * 120.16470 * 179.69627 * 18 17 16 20 20 H 1.08003 * 119.99734 * 214.80530 * 19 18 17 21 21 C 1.39892 * 120.00041 * 34.81031 * 19 18 17 22 22 N 1.30881 * 119.99874 * 355.55506 * 21 19 18 23 23 Si 1.86800 * 120.00284 * 175.55942 * 21 19 18 24 24 H 1.48496 * 109.47198 * 59.99270 * 23 21 19 25 25 H 1.48497 * 109.47346 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.46867 * 299.99983 * 23 21 19 27 27 C 1.40871 * 119.66882 * 359.72154 * 18 17 16 28 28 C 1.36370 * 119.83380 * 359.97438 * 27 18 17 29 29 H 1.08996 * 109.47161 * 300.00069 * 1 2 3 30 30 H 1.08998 * 109.46942 * 59.99897 * 1 2 3 31 31 H 1.08996 * 109.46811 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46876 * 240.00516 * 2 1 3 33 33 H 1.08998 * 109.47408 * 299.99818 * 3 2 1 34 34 H 1.08996 * 109.47271 * 59.99998 * 3 2 1 35 35 H 1.09005 * 109.46973 * 179.97438 * 3 2 1 36 36 H 1.09000 * 109.46859 * 59.99901 * 9 7 5 37 37 H 1.08996 * 109.47051 * 179.97438 * 9 7 5 38 38 H 1.09002 * 109.46645 * 300.00032 * 9 7 5 39 39 H 1.09002 * 109.47148 * 54.99959 * 10 7 5 40 40 H 1.08995 * 109.47321 * 294.99943 * 10 7 5 41 41 H 0.97000 * 119.99619 * 359.97438 * 11 10 7 42 42 H 0.97002 * 119.99743 * 355.70926 * 14 12 11 43 43 H 1.08007 * 119.91041 * 0.02562 * 16 15 14 44 44 H 1.07997 * 120.08945 * 180.25397 * 17 16 15 45 45 H 0.97004 * 119.99805 * 180.02562 * 22 21 19 46 46 H 1.08006 * 120.08412 * 179.97438 * 27 18 17 47 47 H 1.08001 * 119.92005 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0140 -0.6844 1.1855 5 6 3.1937 -1.3169 1.0851 6 8 3.8015 -1.2996 0.0410 7 6 3.7594 -2.0496 2.2743 8 1 3.9054 -1.3493 3.0967 9 6 2.7865 -3.1485 2.7065 10 6 5.1018 -2.6781 1.8947 11 7 5.7082 -3.2881 3.0807 12 6 6.8998 -3.9102 2.9839 13 8 7.4740 -3.9609 1.9133 14 7 7.4550 -4.4763 4.0737 15 6 8.6415 -5.1955 3.9567 16 6 8.8534 -6.3192 4.7554 17 6 10.0109 -7.0316 4.6430 18 6 10.9985 -6.6233 3.7252 19 6 12.2019 -7.3517 3.6076 20 1 13.1270 -6.8357 3.3970 21 6 12.1962 -8.7419 3.7636 22 7 11.0927 -9.3576 4.1043 23 14 13.7636 -9.7194 3.4859 24 1 14.8100 -9.2564 4.4324 25 1 13.4942 -11.1619 3.7135 26 1 14.2328 -9.5168 2.0916 27 6 10.7794 -5.4843 2.9258 28 6 9.6144 -4.7857 3.0450 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1301 1.4426 0.0005 36 1 2.6407 -3.8487 1.8840 37 1 3.1959 -3.6787 3.5663 38 1 1.8300 -2.7011 2.9768 39 1 5.7658 -1.9077 1.5027 40 1 4.9430 -3.4424 1.1340 41 1 5.2502 -3.2474 3.9348 42 1 7.0280 -4.3825 4.9397 43 1 8.0970 -6.6284 5.4617 44 1 10.1719 -7.9038 5.2591 45 1 11.0888 -10.3215 4.2129 46 1 11.5323 -5.1651 2.2203 47 1 9.4451 -3.9119 2.4332 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174716043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:12 Heat of formation + Delta-G solvation = -103.978948 kcal Electronic energy + Delta-G solvation = -27570.554698 eV Core-core repulsion = 23525.018009 eV Total energy + Delta-G solvation = -4045.536689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.06305 -39.89077 -37.76089 -37.22950 -35.81885 -34.32913 -33.67341 -32.99883 -32.20159 -29.52397 -28.78142 -27.76378 -26.80891 -25.16604 -24.27794 -21.93646 -21.43972 -20.84867 -20.60079 -20.06406 -18.25298 -17.86951 -17.21534 -16.92752 -16.53440 -16.26046 -15.45379 -15.17160 -14.87267 -14.59073 -14.44242 -14.25689 -13.96447 -13.78117 -13.48567 -13.13660 -12.86663 -12.80972 -12.76465 -12.63401 -12.46284 -12.19723 -12.07327 -11.79636 -11.63254 -11.54307 -11.33359 -11.29260 -11.08712 -10.97369 -10.95469 -10.68100 -10.62359 -10.07032 -9.50231 -9.42071 -9.19797 -8.95476 -8.81934 -7.48340 -6.78147 -6.55971 -4.28180 1.87460 2.13695 2.72428 3.09455 3.12283 3.14092 3.16220 3.22690 3.72801 4.02673 4.11236 4.32023 4.37261 4.42055 4.48834 4.65841 4.68331 4.75998 4.76933 5.05715 5.22892 5.25828 5.28713 5.32126 5.40720 5.55797 5.58965 5.68057 5.70031 5.76531 5.81753 6.13862 6.23984 6.45828 6.55040 6.81674 6.84943 7.09901 7.20126 7.32088 7.42052 7.44857 7.70953 7.91434 8.01911 8.14920 8.36755 8.49823 8.69495 8.97579 8.98937 9.13206 10.35307 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.035272 B = 0.001724 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.634302 B =16236.432366 C =16495.538133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.078 3.922 3 C -0.171 4.171 4 O -0.351 6.351 5 C 0.470 3.530 6 O -0.498 6.498 7 C -0.095 4.095 8 H 0.116 0.884 9 C -0.145 4.145 10 C 0.156 3.844 11 N -0.752 5.752 12 C 0.696 3.304 13 O -0.573 6.573 14 N -0.667 5.667 15 C 0.023 3.977 16 C -0.123 4.123 17 C -0.140 4.140 18 C 0.097 3.903 19 C -0.462 4.462 20 H 0.075 0.925 21 C 0.070 3.930 22 N -0.814 5.814 23 Si 0.915 3.085 24 H -0.266 1.266 25 H -0.280 1.280 26 H -0.267 1.267 27 C -0.204 4.204 28 C -0.087 4.087 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.392 0.608 42 H 0.391 0.609 43 H 0.090 0.910 44 H 0.132 0.868 45 H 0.277 0.723 46 H 0.095 0.905 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.649 15.444 -0.394 26.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.024 3.976 3 C -0.228 4.228 4 O -0.269 6.269 5 C 0.312 3.688 6 O -0.384 6.384 7 C -0.114 4.114 8 H 0.133 0.867 9 C -0.203 4.203 10 C 0.031 3.969 11 N -0.411 5.411 12 C 0.396 3.604 13 O -0.450 6.450 14 N -0.312 5.312 15 C -0.069 4.069 16 C -0.144 4.144 17 C -0.160 4.160 18 C 0.095 3.905 19 C -0.493 4.493 20 H 0.093 0.907 21 C -0.145 4.145 22 N -0.442 5.442 23 Si 0.740 3.260 24 H -0.191 1.191 25 H -0.205 1.205 26 H -0.191 1.191 27 C -0.224 4.224 28 C -0.107 4.107 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.226 0.774 42 H 0.224 0.776 43 H 0.108 0.892 44 H 0.149 0.851 45 H 0.088 0.912 46 H 0.114 0.886 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -21.052 15.179 -1.715 26.010 hybrid contribution 0.118 -0.414 0.475 0.641 sum -20.934 14.765 -1.239 25.647 Atomic orbital electron populations 1.21891 0.92280 1.03259 1.03214 1.22772 0.95019 0.92765 0.87051 1.22218 1.02307 0.95135 1.03143 1.86546 1.36493 1.62576 1.41265 1.23389 0.79306 0.76321 0.89785 1.90717 1.59064 1.58069 1.30564 1.21206 0.96381 0.98460 0.95393 0.86653 1.21810 0.98584 0.97189 1.02698 1.20869 0.90598 0.98029 0.87403 1.45003 1.21725 1.62357 1.11973 1.15955 0.80541 0.79134 0.84754 1.90936 1.62723 1.63898 1.27402 1.42090 1.25449 1.55332 1.08371 1.17072 0.86340 0.96654 1.06879 1.20286 0.98690 0.94391 1.01014 1.21164 0.94081 1.00613 1.00176 1.17715 0.93390 0.90595 0.88802 1.19447 0.95076 0.91624 1.43193 0.90720 1.25858 0.97396 0.98462 0.92782 1.69760 1.27297 1.10617 1.36494 0.86260 0.81740 0.78161 0.79811 1.19111 1.20495 1.19148 1.20809 0.97550 1.01099 1.02904 1.20435 0.92555 0.99553 0.98157 0.91339 0.90322 0.91612 0.89589 0.90612 0.91487 0.91839 0.91597 0.90661 0.90907 0.90597 0.90623 0.77436 0.77554 0.89165 0.85062 0.91189 0.88648 0.87324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.57 37.16 0.36 -0.38 16 2 C 0.08 0.58 3.18 -26.73 -0.09 0.50 16 3 C -0.17 -1.10 9.55 37.16 0.35 -0.75 16 4 O -0.35 -3.09 9.78 -39.25 -0.38 -3.47 16 5 C 0.47 4.79 7.23 36.01 0.26 5.06 16 6 O -0.50 -6.71 15.14 -18.75 -0.28 -6.99 16 7 C -0.09 -0.77 2.87 -91.77 -0.26 -1.04 16 8 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 9 C -0.15 -0.95 9.00 37.16 0.33 -0.62 16 10 C 0.16 1.86 4.41 -4.04 -0.02 1.84 16 11 N -0.75 -9.13 5.29 -65.23 -0.34 -9.48 16 12 C 0.70 12.44 8.40 -86.92 -0.73 11.71 16 13 O -0.57 -13.10 13.76 5.29 0.07 -13.02 16 14 N -0.67 -11.71 5.31 -14.10 -0.07 -11.79 16 15 C 0.02 0.52 6.31 -83.57 -0.53 0.00 16 16 C -0.12 -2.83 9.90 -39.79 -0.39 -3.22 16 17 C -0.14 -3.64 8.62 -39.26 -0.34 -3.98 16 18 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 19 C -0.46 -12.55 9.02 -37.86 -0.34 -12.90 16 20 H 0.07 1.94 7.85 -52.48 -0.41 1.53 16 21 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 22 N -0.81 -21.50 10.60 55.54 0.59 -20.91 16 23 Si 0.92 19.34 29.56 -169.99 -5.03 14.32 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 26 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 27 C -0.20 -5.28 9.74 -39.26 -0.38 -5.67 16 28 C -0.09 -2.14 8.61 -39.79 -0.34 -2.48 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.74 7.16 -51.93 -0.37 0.37 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.42 7.18 -51.93 -0.37 0.05 16 38 H 0.07 0.40 8.11 -51.93 -0.42 -0.03 16 39 H 0.08 1.05 7.96 -51.93 -0.41 0.63 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.39 3.24 7.67 -40.82 -0.31 2.93 16 42 H 0.39 5.20 8.83 -40.82 -0.36 4.84 16 43 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 44 H 0.13 3.51 6.13 -52.49 -0.32 3.19 16 45 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 46 H 0.10 2.36 8.06 -52.48 -0.42 1.94 16 47 H 0.11 2.68 6.22 -52.49 -0.33 2.36 16 LS Contribution 392.92 15.07 5.92 5.92 Total: -1.00 -33.69 392.92 -9.43 -43.12 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -7.10 Total: 10.48 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -2.80 Total: -8.18 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.17 Total: -42.17 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.60 Total: -23.49 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.69 -9.43 -43.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174716043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.859 kcal (2) G-P(sol) polarization free energy of solvation -33.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds