Wall clock time and date at job start Tue Mar 31 2020 17:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46899 * 2 1 4 4 O 1.45192 * 109.47068 * 119.99953 * 2 1 3 5 5 C 1.34229 * 116.99972 * 150.00070 * 4 2 1 6 6 O 1.20823 * 120.00014 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99939 * 180.02562 * 5 4 2 8 8 H 1.09002 * 109.46881 * 299.99453 * 7 5 4 9 9 C 1.53000 * 109.47337 * 60.00019 * 7 5 4 10 10 C 1.53002 * 109.46944 * 179.97438 * 7 5 4 11 11 N 1.46502 * 109.47169 * 174.99916 * 10 7 5 12 12 C 1.34770 * 120.00102 * 179.72540 * 11 10 7 13 13 O 1.21588 * 120.00213 * 0.27389 * 12 11 10 14 14 N 1.34776 * 120.00049 * 180.27576 * 12 11 10 15 15 C 1.39243 * 119.99863 * 175.70980 * 14 12 11 16 16 C 1.39484 * 119.83394 * 215.01826 * 15 14 12 17 17 C 1.36372 * 120.17030 * 179.76222 * 16 15 14 18 18 C 1.40868 * 119.82819 * 0.53512 * 17 16 15 19 19 C 1.41154 * 120.16470 * 179.69627 * 18 17 16 20 20 H 1.08003 * 119.99734 * 214.80530 * 19 18 17 21 21 C 1.39892 * 120.00041 * 34.81031 * 19 18 17 22 22 N 1.30881 * 119.99874 * 355.55506 * 21 19 18 23 23 Si 1.86800 * 120.00284 * 175.55942 * 21 19 18 24 24 H 1.48496 * 109.47198 * 59.99270 * 23 21 19 25 25 H 1.48497 * 109.47346 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.46867 * 299.99983 * 23 21 19 27 27 C 1.40871 * 119.66882 * 359.72154 * 18 17 16 28 28 C 1.36370 * 119.83380 * 359.97438 * 27 18 17 29 29 H 1.08996 * 109.47161 * 300.00069 * 1 2 3 30 30 H 1.08998 * 109.46942 * 59.99897 * 1 2 3 31 31 H 1.08996 * 109.46811 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46876 * 240.00516 * 2 1 3 33 33 H 1.08998 * 109.47408 * 299.99818 * 3 2 1 34 34 H 1.08996 * 109.47271 * 59.99998 * 3 2 1 35 35 H 1.09005 * 109.46973 * 179.97438 * 3 2 1 36 36 H 1.09000 * 109.46859 * 59.99901 * 9 7 5 37 37 H 1.08996 * 109.47051 * 179.97438 * 9 7 5 38 38 H 1.09002 * 109.46645 * 300.00032 * 9 7 5 39 39 H 1.09002 * 109.47148 * 54.99959 * 10 7 5 40 40 H 1.08995 * 109.47321 * 294.99943 * 10 7 5 41 41 H 0.97000 * 119.99619 * 359.97438 * 11 10 7 42 42 H 0.97002 * 119.99743 * 355.70926 * 14 12 11 43 43 H 1.08007 * 119.91041 * 0.02562 * 16 15 14 44 44 H 1.07997 * 120.08945 * 180.25397 * 17 16 15 45 45 H 0.97004 * 119.99805 * 180.02562 * 22 21 19 46 46 H 1.08006 * 120.08412 * 179.97438 * 27 18 17 47 47 H 1.08001 * 119.92005 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0140 -0.6844 1.1855 5 6 3.1937 -1.3169 1.0851 6 8 3.8015 -1.2996 0.0410 7 6 3.7594 -2.0496 2.2743 8 1 3.9054 -1.3493 3.0967 9 6 2.7865 -3.1485 2.7065 10 6 5.1018 -2.6781 1.8947 11 7 5.7082 -3.2881 3.0807 12 6 6.8998 -3.9102 2.9839 13 8 7.4740 -3.9609 1.9133 14 7 7.4550 -4.4763 4.0737 15 6 8.6415 -5.1955 3.9567 16 6 8.8534 -6.3192 4.7554 17 6 10.0109 -7.0316 4.6430 18 6 10.9985 -6.6233 3.7252 19 6 12.2019 -7.3517 3.6076 20 1 13.1270 -6.8357 3.3970 21 6 12.1962 -8.7419 3.7636 22 7 11.0927 -9.3576 4.1043 23 14 13.7636 -9.7194 3.4859 24 1 14.8100 -9.2564 4.4324 25 1 13.4942 -11.1619 3.7135 26 1 14.2328 -9.5168 2.0916 27 6 10.7794 -5.4843 2.9258 28 6 9.6144 -4.7857 3.0450 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1301 1.4426 0.0005 36 1 2.6407 -3.8487 1.8840 37 1 3.1959 -3.6787 3.5663 38 1 1.8300 -2.7011 2.9768 39 1 5.7658 -1.9077 1.5027 40 1 4.9430 -3.4424 1.1340 41 1 5.2502 -3.2474 3.9348 42 1 7.0280 -4.3825 4.9397 43 1 8.0970 -6.6284 5.4617 44 1 10.1719 -7.9038 5.2591 45 1 11.0888 -10.3215 4.2129 46 1 11.5323 -5.1651 2.2203 47 1 9.4451 -3.9119 2.4332 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174716043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:11 Heat of formation + Delta-G solvation = -124.807003 kcal Electronic energy + Delta-G solvation = -27571.457870 eV Core-core repulsion = 23525.018009 eV Total energy + Delta-G solvation = -4046.439861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.89671 -41.35311 -39.32633 -38.23868 -36.94134 -36.06094 -34.79442 -34.28811 -33.25717 -31.44628 -30.62399 -28.21514 -27.82355 -26.59363 -25.43149 -23.43393 -22.73582 -22.24506 -21.77554 -21.27676 -19.58749 -19.15944 -18.75881 -18.17288 -17.68489 -17.05897 -17.02121 -16.63544 -16.03519 -15.72899 -15.58897 -15.46896 -15.12462 -14.96743 -14.63669 -14.46112 -14.09882 -13.97403 -13.85946 -13.56240 -13.35517 -13.20677 -13.17596 -13.14040 -12.87926 -12.77201 -12.74025 -12.50777 -12.46630 -12.21897 -11.90882 -11.83580 -11.62425 -11.40663 -11.37580 -11.23998 -11.02875 -10.65468 -10.16754 -9.43464 -8.66817 -8.47599 -6.29929 0.86764 1.08148 1.17013 1.31871 1.40564 1.50670 1.53271 1.93967 2.19826 2.26572 2.83815 3.31408 3.39845 3.70208 3.72283 3.76673 3.80398 3.93480 4.11283 4.14675 4.42439 4.55187 4.57288 4.65649 4.67861 4.74453 4.78801 4.84069 4.87538 4.92326 4.96464 5.12100 5.16197 5.17151 5.21085 5.23826 5.34727 5.36608 5.46773 5.47329 5.72009 5.84471 6.05451 6.13571 6.27078 6.42938 6.64489 6.71057 6.99584 7.03774 7.16570 7.65172 8.45016 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.035272 B = 0.001724 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.634302 B =16236.432366 C =16495.538133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.069 3.931 3 C -0.168 4.168 4 O -0.346 6.346 5 C 0.471 3.529 6 O -0.539 6.539 7 C -0.082 4.082 8 H 0.149 0.851 9 C -0.143 4.143 10 C 0.159 3.841 11 N -0.721 5.721 12 C 0.693 3.307 13 O -0.626 6.626 14 N -0.655 5.655 15 C 0.042 3.958 16 C -0.118 4.118 17 C -0.157 4.157 18 C 0.065 3.935 19 C -0.500 4.500 20 H 0.071 0.929 21 C 0.028 3.972 22 N -0.842 5.842 23 Si 0.988 3.012 24 H -0.258 1.258 25 H -0.267 1.267 26 H -0.267 1.267 27 C -0.220 4.220 28 C -0.100 4.100 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.417 0.583 42 H 0.417 0.583 43 H 0.128 0.872 44 H 0.120 0.880 45 H 0.284 0.716 46 H 0.093 0.907 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.023 15.937 1.244 28.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.014 3.986 3 C -0.225 4.225 4 O -0.263 6.263 5 C 0.315 3.685 6 O -0.429 6.429 7 C -0.101 4.101 8 H 0.166 0.834 9 C -0.200 4.200 10 C 0.034 3.966 11 N -0.380 5.380 12 C 0.394 3.606 13 O -0.506 6.506 14 N -0.303 5.303 15 C -0.053 4.053 16 C -0.138 4.138 17 C -0.177 4.177 18 C 0.062 3.938 19 C -0.531 4.531 20 H 0.089 0.911 21 C -0.184 4.184 22 N -0.470 5.470 23 Si 0.809 3.191 24 H -0.182 1.182 25 H -0.192 1.192 26 H -0.192 1.192 27 C -0.240 4.240 28 C -0.120 4.120 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.255 0.745 42 H 0.255 0.745 43 H 0.146 0.854 44 H 0.138 0.862 45 H 0.095 0.905 46 H 0.111 0.889 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -23.523 15.717 -0.003 28.291 hybrid contribution 0.670 -0.418 -0.066 0.792 sum -22.853 15.300 -0.069 27.502 Atomic orbital electron populations 1.21897 0.89998 1.03635 1.04505 1.23028 0.96738 0.92889 0.85919 1.22216 1.00921 0.94794 1.04582 1.86540 1.35620 1.62265 1.41859 1.23779 0.79271 0.75801 0.89685 1.90712 1.60224 1.59668 1.32295 1.21156 0.94297 0.99322 0.95319 0.83352 1.21844 0.99039 0.96382 1.02702 1.20786 0.92298 0.96827 0.86734 1.44618 1.19708 1.60305 1.13354 1.16142 0.81578 0.79055 0.83841 1.90917 1.64479 1.65723 1.29456 1.41806 1.24088 1.54604 1.09795 1.17079 0.87155 0.96170 1.04861 1.20540 0.98425 0.93607 1.01268 1.21160 0.95227 1.00989 1.00290 1.18033 0.94438 0.91422 0.89886 1.19684 0.95146 0.92921 1.45359 0.91078 1.26709 1.00878 0.98835 0.91940 1.69820 1.29100 1.11246 1.36831 0.85169 0.77478 0.76920 0.79559 1.18199 1.19169 1.19221 1.20912 0.98342 1.01490 1.03280 1.20531 0.92873 0.99613 0.99022 0.90440 0.88617 0.91703 0.91391 0.88909 0.90346 0.93952 0.92946 0.89015 0.89024 0.92738 0.92966 0.74464 0.74533 0.85368 0.86204 0.90506 0.88915 0.87719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.57 71.98 0.69 -0.43 16 2 C 0.07 0.95 3.18 30.60 0.10 1.05 16 3 C -0.17 -1.99 9.55 71.98 0.69 -1.30 16 4 O -0.35 -5.57 9.78 -51.41 -0.50 -6.07 16 5 C 0.47 9.25 7.23 71.24 0.51 9.77 16 6 O -0.54 -15.00 15.14 21.97 0.33 -14.67 16 7 C -0.08 -1.15 2.87 -11.54 -0.03 -1.19 16 8 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 9 C -0.14 -1.43 9.00 71.98 0.65 -0.78 16 10 C 0.16 3.66 4.41 86.38 0.38 4.04 16 11 N -0.72 -15.85 5.29 -478.54 -2.53 -18.38 16 12 C 0.69 23.85 8.40 179.06 1.50 25.36 16 13 O -0.63 -28.86 13.76 -3.99 -0.05 -28.91 16 14 N -0.65 -21.49 5.31 -316.78 -1.68 -23.17 16 15 C 0.04 1.83 6.31 38.57 0.24 2.07 16 16 C -0.12 -5.27 9.90 22.13 0.22 -5.05 16 17 C -0.16 -8.24 8.62 22.48 0.19 -8.04 16 18 C 0.06 3.64 5.55 -21.28 -0.12 3.53 16 19 C -0.50 -28.12 9.02 23.39 0.21 -27.91 16 20 H 0.07 3.87 7.85 -2.91 -0.02 3.84 16 21 C 0.03 1.47 5.42 85.24 0.46 1.93 16 22 N -0.84 -45.04 10.60 21.82 0.23 -44.81 16 23 Si 0.99 39.93 29.56 68.60 2.03 41.95 16 24 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 25 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 26 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 27 C -0.22 -11.88 9.74 22.48 0.22 -11.66 16 28 C -0.10 -5.02 8.61 22.13 0.19 -4.83 16 29 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 1.20 7.16 -2.39 -0.02 1.18 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.09 0.64 7.18 -2.39 -0.02 0.62 16 38 H 0.09 0.64 8.11 -2.39 -0.02 0.62 16 39 H 0.05 1.53 7.96 -2.39 -0.02 1.51 16 40 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.42 5.17 7.67 -92.71 -0.71 4.46 16 42 H 0.42 9.47 8.83 -92.71 -0.82 8.65 16 43 H 0.13 4.69 8.06 -2.91 -0.02 4.66 16 44 H 0.12 6.54 6.13 -2.91 -0.02 6.52 16 45 H 0.28 13.84 8.30 -92.71 -0.77 13.07 16 46 H 0.09 4.86 8.06 -2.91 -0.02 4.83 16 47 H 0.10 5.31 6.22 -2.91 -0.02 5.29 16 Total: -1.00 -77.61 392.92 3.40 -74.21 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: -0.53 Total: 33.30 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 6.11 Total: -13.45 kcal Atomic # 7 Polarization: -82.38 SS G_CDS: -3.98 Total: -86.36 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -0.23 Total: -49.66 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.95 kcal Total: -77.61 3.40 -74.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174716043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.600 kcal (2) G-P(sol) polarization free energy of solvation -77.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds