Wall clock time and date at job start Tue Mar 31 2020 17:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47035 * 2 1 4 4 O 1.45208 * 109.46483 * 119.99455 * 2 1 3 5 5 C 1.34224 * 116.99898 * 90.00612 * 4 2 1 6 6 O 1.20834 * 120.00026 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00027 * 179.97438 * 5 4 2 8 8 H 1.08994 * 109.47471 * 59.99326 * 7 5 4 9 9 C 1.52999 * 109.46695 * 299.99291 * 7 5 4 10 10 C 1.53002 * 109.47094 * 179.97438 * 7 5 4 11 11 N 1.46502 * 109.47169 * 184.99767 * 10 7 5 12 12 C 1.34770 * 120.00102 * 179.72540 * 11 10 7 13 13 O 1.21588 * 120.00213 * 0.27389 * 12 11 10 14 14 N 1.34776 * 120.00049 * 180.27576 * 12 11 10 15 15 C 1.39243 * 119.99863 * 175.70980 * 14 12 11 16 16 C 1.39484 * 119.83394 * 215.01826 * 15 14 12 17 17 C 1.36372 * 120.17030 * 179.76222 * 16 15 14 18 18 C 1.40868 * 119.82819 * 0.53512 * 17 16 15 19 19 C 1.41154 * 120.16470 * 179.69627 * 18 17 16 20 20 H 1.08003 * 119.99734 * 214.80530 * 19 18 17 21 21 C 1.39892 * 120.00041 * 34.81031 * 19 18 17 22 22 N 1.30881 * 119.99874 * 355.55506 * 21 19 18 23 23 Si 1.86800 * 120.00284 * 175.55942 * 21 19 18 24 24 H 1.48496 * 109.47198 * 59.99270 * 23 21 19 25 25 H 1.48497 * 109.47346 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.46867 * 299.99983 * 23 21 19 27 27 C 1.40871 * 119.66882 * 359.72154 * 18 17 16 28 28 C 1.36370 * 119.83380 * 359.97438 * 27 18 17 29 29 H 1.08991 * 109.47576 * 300.00436 * 1 2 3 30 30 H 1.09008 * 109.46703 * 60.00682 * 1 2 3 31 31 H 1.08999 * 109.47120 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47352 * 239.99577 * 2 1 3 33 33 H 1.08998 * 109.46712 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.46566 * 299.99124 * 3 2 1 35 35 H 1.09000 * 109.47396 * 59.99604 * 3 2 1 36 36 H 1.09002 * 109.47527 * 300.00186 * 9 7 5 37 37 H 1.09001 * 109.47006 * 60.00871 * 9 7 5 38 38 H 1.08999 * 109.47034 * 180.02562 * 9 7 5 39 39 H 1.09002 * 109.47148 * 64.99810 * 10 7 5 40 40 H 1.08995 * 109.47321 * 304.99795 * 10 7 5 41 41 H 0.97000 * 119.99619 * 359.97438 * 11 10 7 42 42 H 0.97002 * 119.99743 * 355.70926 * 14 12 11 43 43 H 1.08007 * 119.91041 * 0.02562 * 16 15 14 44 44 H 1.07997 * 120.08945 * 180.25397 * 17 16 15 45 45 H 0.97004 * 119.99805 * 180.02562 * 22 21 19 46 46 H 1.08006 * 120.08412 * 179.97438 * 27 18 17 47 47 H 1.08001 * 119.92005 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0139 -0.6844 1.1857 5 6 2.2171 -2.0074 1.0854 6 8 1.9975 -2.5749 0.0415 7 6 2.7191 -2.7850 2.2747 8 1 2.0103 -2.6890 3.0971 9 6 4.0795 -2.2339 2.7068 10 6 2.8631 -4.2603 1.8955 11 7 3.2361 -5.0351 3.0816 12 6 3.4136 -6.3678 2.9875 13 8 3.2692 -6.9263 1.9172 14 7 3.7513 -7.0814 4.0798 15 6 3.8474 -8.4684 4.0030 16 6 3.4718 -9.2516 5.0944 17 6 3.5585 -10.6107 5.0248 18 6 4.0396 -11.2230 3.8509 19 6 4.1383 -12.6289 3.7735 20 1 4.9461 -13.0838 3.2194 21 6 3.1899 -13.4331 4.4145 22 7 2.2622 -12.8851 5.1574 23 14 3.2477 -15.2890 4.2103 24 1 4.5490 -15.8016 4.7094 25 1 2.1424 -15.9070 4.9858 26 1 3.0982 -15.6337 2.7736 27 6 4.4221 -10.4251 2.7548 28 6 4.3238 -9.0674 2.8369 29 1 -0.3634 0.5138 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9562 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 4.7883 -2.3299 1.8844 37 1 3.9765 -1.1830 2.9771 38 1 4.4428 -2.7966 3.5667 39 1 3.6363 -4.3661 1.1345 40 1 1.9151 -4.6290 1.5040 41 1 3.3516 -4.5895 3.9354 42 1 3.9274 -6.6288 4.9195 43 1 3.1073 -8.7804 5.9953 44 1 3.2635 -11.2160 5.8692 45 1 1.6047 -13.4427 5.6022 46 1 4.7922 -10.8875 1.8516 47 1 4.6171 -8.4543 1.9975 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174716059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:15 Heat of formation + Delta-G solvation = -103.984766 kcal Electronic energy + Delta-G solvation = -27567.552565 eV Core-core repulsion = 23522.015624 eV Total energy + Delta-G solvation = -4045.536941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.06069 -39.89062 -37.76007 -37.22778 -35.81941 -34.32912 -33.67242 -32.99907 -32.20377 -29.52404 -28.78150 -27.76021 -26.81531 -25.16723 -24.27763 -21.93431 -21.44186 -20.84753 -20.59946 -20.06602 -18.25681 -17.86392 -17.21804 -16.91715 -16.53291 -16.26705 -15.44649 -15.19500 -14.87112 -14.60030 -14.43758 -14.25094 -13.87300 -13.83863 -13.48338 -13.20284 -12.83844 -12.80625 -12.75000 -12.63279 -12.49214 -12.19320 -12.06926 -11.78674 -11.64175 -11.54477 -11.33466 -11.29034 -11.08690 -10.97556 -10.95110 -10.68076 -10.62414 -10.06949 -9.50286 -9.42083 -9.19946 -8.95219 -8.82017 -7.48316 -6.78134 -6.55924 -4.28160 1.87587 2.13716 2.72448 3.09456 3.12325 3.14104 3.16242 3.22703 3.72822 4.02701 4.11088 4.32217 4.36885 4.42155 4.48587 4.65888 4.68436 4.76406 4.76637 5.06040 5.22657 5.25438 5.28813 5.30988 5.40127 5.55788 5.58735 5.68874 5.69911 5.75185 5.81748 6.13949 6.24044 6.45808 6.55028 6.81681 6.84927 7.09910 7.20146 7.32085 7.42154 7.44879 7.70958 7.91414 8.01951 8.14932 8.36763 8.49828 8.69517 8.97598 8.98960 9.13212 10.35356 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032919 B = 0.001730 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.373676 B =16183.958041 C =16436.543548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.079 3.921 3 C -0.149 4.149 4 O -0.351 6.351 5 C 0.470 3.530 6 O -0.498 6.498 7 C -0.095 4.095 8 H 0.116 0.884 9 C -0.145 4.145 10 C 0.156 3.844 11 N -0.752 5.752 12 C 0.696 3.304 13 O -0.573 6.573 14 N -0.667 5.667 15 C 0.023 3.977 16 C -0.123 4.123 17 C -0.140 4.140 18 C 0.097 3.903 19 C -0.462 4.462 20 H 0.075 0.925 21 C 0.069 3.931 22 N -0.814 5.814 23 Si 0.915 3.085 24 H -0.266 1.266 25 H -0.280 1.280 26 H -0.267 1.267 27 C -0.204 4.204 28 C -0.087 4.087 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.392 0.608 42 H 0.391 0.609 43 H 0.090 0.910 44 H 0.132 0.868 45 H 0.277 0.723 46 H 0.095 0.905 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.730 26.573 -1.818 26.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.024 3.976 3 C -0.206 4.206 4 O -0.269 6.269 5 C 0.312 3.688 6 O -0.384 6.384 7 C -0.115 4.115 8 H 0.134 0.866 9 C -0.202 4.202 10 C 0.031 3.969 11 N -0.411 5.411 12 C 0.396 3.604 13 O -0.450 6.450 14 N -0.312 5.312 15 C -0.069 4.069 16 C -0.144 4.144 17 C -0.160 4.160 18 C 0.095 3.905 19 C -0.493 4.493 20 H 0.093 0.907 21 C -0.145 4.145 22 N -0.442 5.442 23 Si 0.740 3.260 24 H -0.191 1.191 25 H -0.205 1.205 26 H -0.191 1.191 27 C -0.224 4.224 28 C -0.107 4.107 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.226 0.774 42 H 0.224 0.776 43 H 0.108 0.892 44 H 0.149 0.851 45 H 0.088 0.912 46 H 0.114 0.886 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.166 25.847 -3.034 26.051 hybrid contribution -0.219 -0.336 0.599 0.720 sum -1.385 25.512 -2.436 25.665 Atomic orbital electron populations 1.22220 0.94183 1.03278 1.03148 1.22774 0.94718 0.93071 0.87029 1.21891 1.02140 0.93381 1.03222 1.86547 1.76993 1.22076 1.41269 1.23386 0.74278 0.81362 0.89778 1.90721 1.47234 1.69869 1.30587 1.21205 1.00497 0.94344 0.95430 0.86628 1.21806 0.93879 1.01913 1.02632 1.20868 1.02507 0.86163 0.87356 1.45003 1.77437 1.06629 1.11989 1.15955 0.78608 0.80748 0.85073 1.90936 1.57608 1.69239 1.27175 1.42090 1.71734 1.06298 1.11120 1.17073 1.12338 0.79316 0.98220 1.20287 1.02875 0.94613 0.96611 1.21165 1.03792 0.91900 0.99179 1.17715 0.89576 0.93323 0.89888 1.19447 1.10266 0.91142 1.28487 0.90718 1.25859 0.94515 1.01067 0.93059 1.69760 1.12941 1.37345 1.24120 0.86260 0.78509 0.81917 0.79286 1.19109 1.20496 1.19147 1.20809 1.10476 0.92812 0.98266 1.20434 0.99030 0.94823 0.96408 0.91477 0.90609 0.91817 0.89593 0.91628 0.90315 0.91339 0.91631 0.90905 0.90688 0.90663 0.90556 0.77436 0.77555 0.89166 0.85062 0.91187 0.88647 0.87322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 9.55 37.16 0.35 -0.77 16 2 C 0.08 0.59 3.18 -26.73 -0.09 0.50 16 3 C -0.15 -0.73 9.57 37.16 0.36 -0.38 16 4 O -0.35 -3.09 9.78 -39.24 -0.38 -3.48 16 5 C 0.47 4.80 7.23 36.01 0.26 5.06 16 6 O -0.50 -6.72 15.14 -18.76 -0.28 -7.01 16 7 C -0.10 -0.78 2.86 -91.77 -0.26 -1.04 16 8 H 0.12 0.72 8.14 -51.93 -0.42 0.29 16 9 C -0.14 -0.91 9.00 37.16 0.33 -0.57 16 10 C 0.16 1.86 4.41 -4.04 -0.02 1.84 16 11 N -0.75 -9.14 5.29 -65.23 -0.34 -9.48 16 12 C 0.70 12.44 8.40 -86.92 -0.73 11.71 16 13 O -0.57 -13.10 13.76 5.29 0.07 -13.03 16 14 N -0.67 -11.71 5.31 -14.10 -0.07 -11.79 16 15 C 0.02 0.52 6.31 -83.57 -0.53 -0.01 16 16 C -0.12 -2.84 9.90 -39.79 -0.39 -3.23 16 17 C -0.14 -3.65 8.62 -39.26 -0.34 -3.99 16 18 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 19 C -0.46 -12.56 9.02 -37.86 -0.34 -12.90 16 20 H 0.07 1.94 7.85 -52.48 -0.41 1.53 16 21 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 22 N -0.81 -21.52 10.60 55.54 0.59 -20.93 16 23 Si 0.92 19.35 29.56 -169.99 -5.03 14.33 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 26 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 27 C -0.20 -5.28 9.74 -39.26 -0.38 -5.67 16 28 C -0.09 -2.14 8.61 -39.79 -0.34 -2.48 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.38 8.14 -51.92 -0.42 -0.05 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.74 7.16 -51.93 -0.37 0.37 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.38 8.11 -51.93 -0.42 -0.04 16 38 H 0.07 0.39 7.18 -51.93 -0.37 0.02 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.08 1.08 7.96 -51.93 -0.41 0.67 16 41 H 0.39 3.24 7.67 -40.82 -0.31 2.93 16 42 H 0.39 5.20 8.83 -40.82 -0.36 4.84 16 43 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16 44 H 0.13 3.52 6.13 -52.49 -0.32 3.20 16 45 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 46 H 0.10 2.36 8.06 -52.48 -0.42 1.94 16 47 H 0.11 2.68 6.22 -52.49 -0.33 2.35 16 LS Contribution 392.93 15.07 5.92 5.92 Total: -1.00 -33.73 392.93 -9.43 -43.16 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -7.10 Total: 10.45 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -2.80 Total: -8.15 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.17 Total: -42.20 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.60 Total: -23.51 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.73 -9.43 -43.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174716059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.827 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds