Wall clock time and date at job start Tue Mar 31 2020 17:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47035 * 2 1 4 4 O 1.45208 * 109.46483 * 119.99455 * 2 1 3 5 5 C 1.34224 * 116.99898 * 90.00612 * 4 2 1 6 6 O 1.20834 * 120.00026 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00027 * 179.97438 * 5 4 2 8 8 H 1.08994 * 109.47471 * 59.99326 * 7 5 4 9 9 C 1.52999 * 109.46695 * 299.99291 * 7 5 4 10 10 C 1.53002 * 109.47094 * 179.97438 * 7 5 4 11 11 N 1.46502 * 109.47169 * 184.99767 * 10 7 5 12 12 C 1.34770 * 120.00102 * 179.72540 * 11 10 7 13 13 O 1.21588 * 120.00213 * 0.27389 * 12 11 10 14 14 N 1.34776 * 120.00049 * 180.27576 * 12 11 10 15 15 C 1.39243 * 119.99863 * 175.70980 * 14 12 11 16 16 C 1.39484 * 119.83394 * 215.01826 * 15 14 12 17 17 C 1.36372 * 120.17030 * 179.76222 * 16 15 14 18 18 C 1.40868 * 119.82819 * 0.53512 * 17 16 15 19 19 C 1.41154 * 120.16470 * 179.69627 * 18 17 16 20 20 H 1.08003 * 119.99734 * 214.80530 * 19 18 17 21 21 C 1.39892 * 120.00041 * 34.81031 * 19 18 17 22 22 N 1.30881 * 119.99874 * 355.55506 * 21 19 18 23 23 Si 1.86800 * 120.00284 * 175.55942 * 21 19 18 24 24 H 1.48496 * 109.47198 * 59.99270 * 23 21 19 25 25 H 1.48497 * 109.47346 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.46867 * 299.99983 * 23 21 19 27 27 C 1.40871 * 119.66882 * 359.72154 * 18 17 16 28 28 C 1.36370 * 119.83380 * 359.97438 * 27 18 17 29 29 H 1.08991 * 109.47576 * 300.00436 * 1 2 3 30 30 H 1.09008 * 109.46703 * 60.00682 * 1 2 3 31 31 H 1.08999 * 109.47120 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47352 * 239.99577 * 2 1 3 33 33 H 1.08998 * 109.46712 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.46566 * 299.99124 * 3 2 1 35 35 H 1.09000 * 109.47396 * 59.99604 * 3 2 1 36 36 H 1.09002 * 109.47527 * 300.00186 * 9 7 5 37 37 H 1.09001 * 109.47006 * 60.00871 * 9 7 5 38 38 H 1.08999 * 109.47034 * 180.02562 * 9 7 5 39 39 H 1.09002 * 109.47148 * 64.99810 * 10 7 5 40 40 H 1.08995 * 109.47321 * 304.99795 * 10 7 5 41 41 H 0.97000 * 119.99619 * 359.97438 * 11 10 7 42 42 H 0.97002 * 119.99743 * 355.70926 * 14 12 11 43 43 H 1.08007 * 119.91041 * 0.02562 * 16 15 14 44 44 H 1.07997 * 120.08945 * 180.25397 * 17 16 15 45 45 H 0.97004 * 119.99805 * 180.02562 * 22 21 19 46 46 H 1.08006 * 120.08412 * 179.97438 * 27 18 17 47 47 H 1.08001 * 119.92005 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0139 -0.6844 1.1857 5 6 2.2171 -2.0074 1.0854 6 8 1.9975 -2.5749 0.0415 7 6 2.7191 -2.7850 2.2747 8 1 2.0103 -2.6890 3.0971 9 6 4.0795 -2.2339 2.7068 10 6 2.8631 -4.2603 1.8955 11 7 3.2361 -5.0351 3.0816 12 6 3.4136 -6.3678 2.9875 13 8 3.2692 -6.9263 1.9172 14 7 3.7513 -7.0814 4.0798 15 6 3.8474 -8.4684 4.0030 16 6 3.4718 -9.2516 5.0944 17 6 3.5585 -10.6107 5.0248 18 6 4.0396 -11.2230 3.8509 19 6 4.1383 -12.6289 3.7735 20 1 4.9461 -13.0838 3.2194 21 6 3.1899 -13.4331 4.4145 22 7 2.2622 -12.8851 5.1574 23 14 3.2477 -15.2890 4.2103 24 1 4.5490 -15.8016 4.7094 25 1 2.1424 -15.9070 4.9858 26 1 3.0982 -15.6337 2.7736 27 6 4.4221 -10.4251 2.7548 28 6 4.3238 -9.0674 2.8369 29 1 -0.3634 0.5138 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9562 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 4.7883 -2.3299 1.8844 37 1 3.9765 -1.1830 2.9771 38 1 4.4428 -2.7966 3.5667 39 1 3.6363 -4.3661 1.1345 40 1 1.9151 -4.6290 1.5040 41 1 3.3516 -4.5895 3.9354 42 1 3.9274 -6.6288 4.9195 43 1 3.1073 -8.7804 5.9953 44 1 3.2635 -11.2160 5.8692 45 1 1.6047 -13.4427 5.6022 46 1 4.7922 -10.8875 1.8516 47 1 4.6171 -8.4543 1.9975 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174716059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:14 Heat of formation + Delta-G solvation = -124.848728 kcal Electronic energy + Delta-G solvation = -27568.457294 eV Core-core repulsion = 23522.015624 eV Total energy + Delta-G solvation = -4046.441670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.89576 -41.35317 -39.32646 -38.23787 -36.94043 -36.06119 -34.79484 -34.28931 -33.25688 -31.44691 -30.62403 -28.21677 -27.82144 -26.59245 -25.43083 -23.43349 -22.73739 -22.24532 -21.77304 -21.27991 -19.58753 -19.16354 -18.75252 -18.17651 -17.67288 -17.06179 -17.03145 -16.63638 -16.03403 -15.79537 -15.56059 -15.44458 -15.09232 -14.86306 -14.77115 -14.46719 -14.09505 -13.98955 -13.82255 -13.56766 -13.35332 -13.20669 -13.17700 -13.14654 -12.86849 -12.77386 -12.74072 -12.51162 -12.46250 -12.21632 -11.91052 -11.83599 -11.62385 -11.40743 -11.37731 -11.23952 -11.03048 -10.65466 -10.16780 -9.43496 -8.66857 -8.47671 -6.29997 0.86719 1.08124 1.17002 1.31814 1.40489 1.50631 1.53223 1.93880 2.19828 2.26508 2.83773 3.31412 3.39872 3.70708 3.71416 3.77200 3.80359 3.93331 4.11253 4.14608 4.42324 4.55220 4.57440 4.65463 4.68108 4.74123 4.79259 4.84173 4.87879 4.92583 4.96436 5.11923 5.16139 5.17136 5.21031 5.24277 5.34708 5.36607 5.46736 5.47287 5.71978 5.84424 6.05402 6.13533 6.27048 6.42887 6.64422 6.71014 6.99529 7.03740 7.16536 7.65133 8.44942 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032919 B = 0.001730 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.373676 B =16183.958041 C =16436.543548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.069 3.931 3 C -0.143 4.143 4 O -0.346 6.346 5 C 0.471 3.529 6 O -0.540 6.540 7 C -0.082 4.082 8 H 0.147 0.853 9 C -0.142 4.142 10 C 0.159 3.841 11 N -0.721 5.721 12 C 0.693 3.307 13 O -0.626 6.626 14 N -0.655 5.655 15 C 0.041 3.959 16 C -0.118 4.118 17 C -0.157 4.157 18 C 0.065 3.935 19 C -0.500 4.500 20 H 0.071 0.929 21 C 0.028 3.972 22 N -0.842 5.842 23 Si 0.988 3.012 24 H -0.258 1.258 25 H -0.268 1.268 26 H -0.267 1.267 27 C -0.220 4.220 28 C -0.100 4.100 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.040 0.960 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.053 0.947 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.417 0.583 42 H 0.417 0.583 43 H 0.128 0.872 44 H 0.120 0.880 45 H 0.284 0.716 46 H 0.093 0.907 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.008 28.880 -0.067 28.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.014 3.986 3 C -0.200 4.200 4 O -0.263 6.263 5 C 0.315 3.685 6 O -0.429 6.429 7 C -0.102 4.102 8 H 0.164 0.836 9 C -0.199 4.199 10 C 0.034 3.966 11 N -0.380 5.380 12 C 0.394 3.606 13 O -0.506 6.506 14 N -0.303 5.303 15 C -0.053 4.053 16 C -0.139 4.139 17 C -0.177 4.177 18 C 0.062 3.938 19 C -0.531 4.531 20 H 0.089 0.911 21 C -0.184 4.184 22 N -0.470 5.470 23 Si 0.809 3.191 24 H -0.182 1.182 25 H -0.192 1.192 26 H -0.192 1.192 27 C -0.240 4.240 28 C -0.120 4.120 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.255 0.745 42 H 0.255 0.745 43 H 0.146 0.854 44 H 0.138 0.862 45 H 0.095 0.905 46 H 0.111 0.889 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.430 28.264 -1.214 28.326 hybrid contribution -0.151 -0.819 0.008 0.833 sum -1.582 27.445 -1.206 27.517 Atomic orbital electron populations 1.22220 0.93534 1.02235 1.04576 1.23030 0.95385 0.94214 0.85924 1.21897 1.02142 0.91477 1.04493 1.86542 1.76643 1.21238 1.41862 1.23784 0.73295 0.81783 0.89685 1.90716 1.49184 1.70687 1.32332 1.21156 1.02594 0.91145 0.95265 0.83572 1.21841 0.92037 1.03233 1.02765 1.20784 1.00478 0.88596 0.86777 1.44618 1.75464 1.04521 1.13381 1.16141 0.78179 0.82202 0.84091 1.90917 1.59647 1.70789 1.29219 1.41805 1.71596 1.04474 1.12417 1.17079 1.09632 0.81625 0.96938 1.20540 1.01704 0.93610 0.98018 1.21160 1.04748 0.93267 0.98510 1.18033 0.90935 0.93994 0.90817 1.19685 1.11408 0.91784 1.30224 0.91058 1.26712 0.93595 1.05817 0.92253 1.69821 1.13432 1.39182 1.24589 0.85167 0.79108 0.75715 0.79128 1.18180 1.19184 1.19214 1.20913 1.11239 0.93631 0.98229 1.20532 0.99732 0.94356 0.97390 0.90376 0.88890 0.94029 0.91339 0.91620 0.88614 0.90476 0.92749 0.89080 0.88946 0.92617 0.93088 0.74467 0.74534 0.85405 0.86218 0.90512 0.88894 0.87675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 9.55 71.98 0.69 -1.36 16 2 C 0.07 0.96 3.18 30.60 0.10 1.06 16 3 C -0.14 -1.11 9.57 71.98 0.69 -0.42 16 4 O -0.35 -5.59 9.78 -51.36 -0.50 -6.09 16 5 C 0.47 9.28 7.23 71.24 0.51 9.80 16 6 O -0.54 -15.06 15.14 21.94 0.33 -14.73 16 7 C -0.08 -1.16 2.86 -11.54 -0.03 -1.20 16 8 H 0.15 1.24 8.14 -2.39 -0.02 1.22 16 9 C -0.14 -1.33 9.00 71.98 0.65 -0.69 16 10 C 0.16 3.67 4.41 86.38 0.38 4.05 16 11 N -0.72 -15.86 5.29 -478.54 -2.53 -18.39 16 12 C 0.69 23.85 8.40 179.06 1.50 25.36 16 13 O -0.63 -28.85 13.76 -3.99 -0.05 -28.90 16 14 N -0.65 -21.49 5.31 -316.78 -1.68 -23.17 16 15 C 0.04 1.83 6.31 38.57 0.24 2.07 16 16 C -0.12 -5.30 9.90 22.13 0.22 -5.08 16 17 C -0.16 -8.26 8.62 22.48 0.19 -8.06 16 18 C 0.06 3.64 5.55 -21.28 -0.12 3.53 16 19 C -0.50 -28.12 9.02 23.39 0.21 -27.91 16 20 H 0.07 3.88 7.85 -2.91 -0.02 3.85 16 21 C 0.03 1.46 5.42 85.24 0.46 1.92 16 22 N -0.84 -45.13 10.60 21.82 0.23 -44.90 16 23 Si 0.99 39.95 29.56 68.60 2.03 41.98 16 24 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 25 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 26 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 27 C -0.22 -11.86 9.74 22.48 0.22 -11.65 16 28 C -0.10 -5.00 8.61 22.13 0.19 -4.81 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 1.20 7.16 -2.39 -0.02 1.18 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.09 0.60 8.11 -2.39 -0.02 0.58 16 38 H 0.09 0.57 7.18 -2.39 -0.02 0.55 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.05 1.47 7.96 -2.39 -0.02 1.45 16 41 H 0.42 5.18 7.67 -92.71 -0.71 4.47 16 42 H 0.42 9.47 8.83 -92.71 -0.82 8.65 16 43 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 44 H 0.12 6.54 6.13 -2.91 -0.02 6.52 16 45 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 46 H 0.09 4.86 8.06 -2.91 -0.02 4.84 16 47 H 0.11 5.32 6.22 -2.91 -0.02 5.30 16 Total: -1.00 -77.67 392.93 3.40 -74.27 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: -0.53 Total: 33.31 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 6.11 Total: -13.39 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -3.98 Total: -86.46 kcal Atomic # 8 Polarization: -49.50 SS G_CDS: -0.23 Total: -49.72 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -77.67 3.40 -74.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174716059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.575 kcal (2) G-P(sol) polarization free energy of solvation -77.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds