Wall clock time and date at job start Tue Mar 31 2020 18:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47315 * 2 1 4 4 C 1.50705 * 109.46759 * 240.00460 * 2 1 3 5 5 O 1.21298 * 119.99642 * 245.60158 * 4 2 1 6 6 N 1.34776 * 120.00222 * 65.60398 * 4 2 1 7 7 C 1.40100 * 119.99952 * 175.76148 * 6 4 2 8 8 C 1.38843 * 119.96196 * 214.89626 * 7 6 4 9 9 C 1.38279 * 120.13891 * 179.68752 * 8 7 6 10 10 C 1.38475 * 119.80199 * 0.59652 * 9 8 7 11 11 C 1.38759 * 120.18690 * 359.71159 * 10 9 8 12 12 C 1.38409 * 120.13581 * 359.96825 * 11 10 9 13 13 O 1.36481 * 119.61517 * 179.97438 * 11 10 9 14 14 C 1.42904 * 115.93071 * 68.34038 * 13 11 10 15 15 C 1.52067 * 110.76965 * 275.57148 * 14 13 11 16 16 C 1.52065 * 112.36631 * 64.79657 * 15 14 13 17 17 O 1.36559 * 120.23852 * 179.69067 * 10 9 8 18 18 N 1.46893 * 109.47305 * 120.00480 * 2 1 3 19 19 C 1.46905 * 111.00106 * 285.36143 * 18 2 1 20 20 C 1.46898 * 111.00282 * 49.32067 * 18 2 1 21 21 C 1.50702 * 109.47238 * 170.00299 * 20 18 2 22 22 H 1.07994 * 120.00100 * 359.97438 * 21 20 18 23 23 C 1.37877 * 119.99780 * 179.97438 * 21 20 18 24 24 N 1.31521 * 119.99752 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 120.00171 * 359.97438 * 23 21 20 26 26 H 1.48494 * 109.47256 * 90.00084 * 25 23 21 27 27 H 1.48499 * 109.47095 * 209.99882 * 25 23 21 28 28 H 1.48501 * 109.47041 * 330.00002 * 25 23 21 29 29 H 1.08995 * 109.46915 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46736 * 299.99567 * 1 2 3 31 31 H 1.08990 * 109.47390 * 59.99591 * 1 2 3 32 32 H 0.96996 * 119.99850 * 355.75982 * 6 4 2 33 33 H 1.07993 * 119.93229 * 359.96483 * 8 7 6 34 34 H 1.08000 * 120.09713 * 180.27913 * 9 8 7 35 35 H 1.07999 * 120.16895 * 180.02562 * 12 11 10 36 36 H 1.09001 * 109.21873 * 35.90485 * 14 13 11 37 37 H 1.08997 * 109.21257 * 155.24189 * 14 13 11 38 38 H 1.09002 * 108.90216 * 185.53707 * 15 14 13 39 39 H 1.08996 * 108.90418 * 304.14563 * 15 14 13 40 40 H 1.08996 * 109.21691 * 55.51162 * 16 15 14 41 41 H 1.08999 * 109.21165 * 174.84000 * 16 15 14 42 42 H 1.09000 * 109.47279 * 189.02252 * 19 18 2 43 43 H 1.08998 * 109.46950 * 309.02866 * 19 18 2 44 44 H 1.09002 * 109.46830 * 69.02861 * 19 18 2 45 45 H 1.09002 * 109.46591 * 289.99690 * 20 18 2 46 46 H 1.08994 * 109.47579 * 49.99617 * 20 18 2 47 47 H 0.97005 * 119.99597 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.6435 -1.7524 -1.1222 6 7 1.8024 -0.1877 -2.4514 7 6 2.3447 -0.7999 -3.5889 8 6 2.7630 -0.0236 -4.6614 9 6 3.3047 -0.6235 -5.7833 10 6 3.4177 -2.0025 -5.8395 11 6 2.9947 -2.7814 -4.7719 12 6 2.4581 -2.1832 -3.6450 13 8 3.1110 -4.1395 -4.8400 14 6 4.4440 -4.6542 -4.8219 15 6 5.0447 -4.6449 -6.2189 16 6 5.2157 -3.2364 -6.7658 17 8 3.9456 -2.6047 -6.9457 18 7 2.0197 -0.6926 1.1993 19 6 1.8527 0.1439 2.3954 20 6 1.3525 -1.9904 1.3671 21 6 2.0443 -2.7744 2.4525 22 1 2.8948 -2.3510 2.9659 23 6 1.5913 -4.0321 2.7899 24 7 2.1954 -4.7164 3.7368 25 14 0.1196 -4.7642 1.9023 26 1 0.5854 -5.5223 0.7135 27 1 -0.6067 -5.6790 2.8193 28 1 -0.7898 -3.6732 1.4687 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.2614 0.6122 -2.5425 33 1 2.6691 1.0514 -4.6174 34 1 3.6340 -0.0187 -6.6152 35 1 2.1291 -2.7888 -2.8135 36 1 5.0573 -4.0389 -4.1635 37 1 4.4286 -5.6767 -4.4448 38 1 6.0192 -5.1322 -6.1875 39 1 4.3915 -5.2052 -6.8878 40 1 5.8127 -2.6502 -6.0672 41 1 5.7314 -3.2842 -7.7249 42 1 2.3646 -0.3207 3.2381 43 1 2.2778 1.1305 2.2110 44 1 0.7916 0.2425 2.6244 45 1 0.3102 -1.8301 1.6429 46 1 1.3991 -2.5468 0.4310 47 1 1.8769 -5.6015 3.9739 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177189517.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:46 Heat of formation + Delta-G solvation = -57.337337 kcal Electronic energy + Delta-G solvation = -29641.432254 eV Core-core repulsion = 25597.918098 eV Total energy + Delta-G solvation = -4043.514157 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.07880 -40.11068 -37.93747 -37.50131 -36.48360 -34.50510 -32.80487 -32.49330 -30.83471 -30.22452 -28.36939 -27.87729 -26.61799 -25.37747 -23.92187 -23.14443 -22.00991 -21.76351 -20.82220 -19.39903 -18.59884 -17.80620 -17.24954 -16.91241 -16.53805 -16.05400 -15.58306 -15.47843 -14.90122 -14.69369 -14.38921 -14.22302 -14.09162 -13.96036 -13.78371 -13.67751 -13.51547 -13.12472 -12.99380 -12.56611 -12.42941 -12.16144 -12.03010 -11.93805 -11.46078 -11.41549 -11.16207 -11.10344 -11.06355 -10.54853 -10.46221 -10.35533 -10.13481 -9.93802 -9.84687 -9.47921 -9.06508 -8.79826 -8.47269 -8.04345 -7.41567 -5.97694 -3.92967 0.94258 1.15215 2.75109 2.93808 3.32192 3.34568 3.40439 3.42426 3.42582 3.82960 4.45287 4.48969 4.52255 4.69130 4.75711 4.83851 4.91276 4.96626 5.09642 5.11996 5.17542 5.21723 5.24966 5.30048 5.36231 5.46561 5.55566 5.66997 5.71900 5.75856 5.78488 5.83760 5.94759 6.12654 6.15673 6.20403 6.27225 6.32878 6.63807 6.72694 6.89812 7.01536 7.02731 7.38009 7.50799 7.67782 7.85903 8.01060 8.37360 8.71673 9.10410 9.64622 11.15782 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012594 B = 0.003594 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.814042 B = 7789.934407 C = 9298.763527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.066 3.934 3 H 0.099 0.901 4 C 0.513 3.487 5 O -0.475 6.475 6 N -0.682 5.682 7 C 0.167 3.833 8 C -0.142 4.142 9 C -0.098 4.098 10 C 0.042 3.958 11 C 0.088 3.912 12 C -0.120 4.120 13 O -0.318 6.318 14 C 0.059 3.941 15 C -0.186 4.186 16 C 0.059 3.941 17 O -0.320 6.320 18 N -0.511 5.511 19 C 0.039 3.961 20 C 0.159 3.841 21 C -0.501 4.501 22 H 0.079 0.921 23 C 0.069 3.931 24 N -0.903 5.903 25 Si 0.872 3.128 26 H -0.275 1.275 27 H -0.287 1.287 28 H -0.270 1.270 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.409 0.591 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.154 0.846 36 H 0.061 0.939 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.047 0.953 44 H 0.018 0.982 45 H -0.012 1.012 46 H 0.039 0.961 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.941 10.886 -20.723 23.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.047 4.047 3 H 0.117 0.883 4 C 0.299 3.701 5 O -0.344 6.344 6 N -0.330 5.330 7 C 0.072 3.928 8 C -0.163 4.163 9 C -0.117 4.117 10 C -0.003 4.003 11 C 0.043 3.957 12 C -0.141 4.141 13 O -0.234 6.234 14 C -0.015 4.015 15 C -0.223 4.223 16 C -0.016 4.016 17 O -0.236 6.236 18 N -0.234 5.234 19 C -0.109 4.109 20 C 0.033 3.967 21 C -0.539 4.539 22 H 0.097 0.903 23 C -0.132 4.132 24 N -0.543 5.543 25 Si 0.699 3.301 26 H -0.201 1.201 27 H -0.213 1.213 28 H -0.195 1.195 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.245 0.755 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.171 0.829 36 H 0.079 0.921 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.101 0.899 43 H 0.066 0.934 44 H 0.037 0.963 45 H 0.006 0.994 46 H 0.057 0.943 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.684 9.692 -20.671 22.988 hybrid contribution -1.576 0.004 -0.234 1.593 sum 1.108 9.697 -20.905 23.071 Atomic orbital electron populations 1.22445 0.95789 1.03674 1.02372 1.21612 0.93830 0.98180 0.91117 0.88285 1.21051 0.79439 0.85869 0.83709 1.90779 1.36952 1.21285 1.85430 1.43723 1.53240 1.31286 1.04706 1.17564 0.96912 0.91071 0.87281 1.20807 1.02236 0.99779 0.93460 1.20786 1.00408 0.92353 0.98181 1.19101 1.01824 0.91302 0.88079 1.18970 1.00430 0.83604 0.92713 1.21291 1.01931 0.93591 0.97273 1.86362 1.27440 1.16679 1.92956 1.22641 0.82422 1.00574 0.95909 1.22470 1.02784 0.98616 0.98478 1.22638 0.84069 0.92643 1.02265 1.86398 1.35187 1.71255 1.30795 1.61921 1.57308 1.04262 0.99942 1.22267 0.98994 0.95644 0.93995 1.20340 0.91827 0.86044 0.98481 1.20981 1.15385 1.00280 1.17252 0.90272 1.24843 0.96649 0.96763 0.94952 1.69895 1.41117 1.12472 1.30767 0.86916 0.83595 0.79499 0.80062 1.20060 1.21284 1.19488 0.91178 0.91135 0.92429 0.75501 0.84824 0.84566 0.82878 0.92104 0.87695 0.89232 0.89938 0.92429 0.88093 0.89936 0.93376 0.96331 0.99408 0.94293 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 8.34 37.16 0.31 -2.20 16 2 C 0.07 1.03 2.70 -68.86 -0.19 0.84 16 3 H 0.10 1.23 7.85 -51.93 -0.41 0.82 16 4 C 0.51 8.61 6.69 -10.98 -0.07 8.54 16 5 O -0.48 -10.37 11.98 5.54 0.07 -10.30 16 6 N -0.68 -8.48 5.31 -9.82 -0.05 -8.53 16 7 C 0.17 2.24 6.30 -83.61 -0.53 1.72 16 8 C -0.14 -1.50 9.96 -39.34 -0.39 -1.89 16 9 C -0.10 -1.07 10.00 -39.48 -0.39 -1.47 16 10 C 0.04 0.56 5.73 -39.30 -0.23 0.33 16 11 C 0.09 1.35 5.73 -39.33 -0.23 1.12 16 12 C -0.12 -1.95 8.64 -39.27 -0.34 -2.29 16 13 O -0.32 -5.02 10.16 -36.75 -0.37 -5.39 16 14 C 0.06 0.71 6.51 36.68 0.24 0.95 16 15 C -0.19 -1.71 5.92 -27.68 -0.16 -1.87 16 16 C 0.06 0.55 6.51 36.68 0.24 0.79 16 17 O -0.32 -4.05 10.17 -37.01 -0.38 -4.43 16 18 N -0.51 -10.60 4.40 -237.73 -1.05 -11.65 16 19 C 0.04 0.71 9.02 60.07 0.54 1.25 16 20 C 0.16 3.94 2.34 -4.98 -0.01 3.92 16 21 C -0.50 -14.68 9.13 -34.44 -0.31 -14.99 16 22 H 0.08 2.51 7.34 -52.49 -0.39 2.13 16 23 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 24 N -0.90 -28.41 13.96 55.43 0.77 -27.64 16 25 Si 0.87 22.49 27.47 -169.99 -4.67 17.82 16 26 H -0.27 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.27 -6.63 6.54 56.52 0.37 -6.26 16 29 H 0.07 1.16 6.53 -51.93 -0.34 0.82 16 30 H 0.07 0.92 7.08 -51.93 -0.37 0.55 16 31 H 0.06 0.57 7.84 -51.93 -0.41 0.16 16 32 H 0.41 3.41 8.52 -40.82 -0.35 3.06 16 33 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.15 2.94 6.25 -52.49 -0.33 2.61 16 36 H 0.06 0.74 7.93 -51.93 -0.41 0.33 16 37 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.52 7.93 -51.93 -0.41 0.11 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.08 1.68 7.01 -51.93 -0.36 1.32 16 43 H 0.05 0.70 7.90 -51.93 -0.41 0.29 16 44 H 0.02 0.31 7.12 -51.93 -0.37 -0.05 16 45 H -0.01 -0.28 5.84 -51.93 -0.30 -0.59 16 46 H 0.04 1.03 5.47 -51.93 -0.28 0.75 16 47 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 370.80 15.07 5.59 5.59 Total: -1.00 -36.66 370.80 -8.55 -45.21 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.84 Total: 2.59 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -1.62 Total: -3.28 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.32 Total: -47.81 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.68 Total: -20.12 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.66 -8.55 -45.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177189517.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.124 kcal (2) G-P(sol) polarization free energy of solvation -36.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds