Wall clock time and date at job start Tue Mar 31 2020 18:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47315 * 2 1 4 4 C 1.50705 * 109.46759 * 240.00460 * 2 1 3 5 5 O 1.21298 * 119.99642 * 245.60158 * 4 2 1 6 6 N 1.34776 * 120.00222 * 65.60398 * 4 2 1 7 7 C 1.40100 * 119.99952 * 175.76148 * 6 4 2 8 8 C 1.38843 * 119.96196 * 214.89626 * 7 6 4 9 9 C 1.38279 * 120.13891 * 179.68752 * 8 7 6 10 10 C 1.38475 * 119.80199 * 0.59652 * 9 8 7 11 11 C 1.38759 * 120.18690 * 359.71159 * 10 9 8 12 12 C 1.38409 * 120.13581 * 359.96825 * 11 10 9 13 13 O 1.36481 * 119.61517 * 179.97438 * 11 10 9 14 14 C 1.42904 * 115.93071 * 68.34038 * 13 11 10 15 15 C 1.52067 * 110.76965 * 275.57148 * 14 13 11 16 16 C 1.52065 * 112.36631 * 64.79657 * 15 14 13 17 17 O 1.36559 * 120.23852 * 179.69067 * 10 9 8 18 18 N 1.46893 * 109.47305 * 120.00480 * 2 1 3 19 19 C 1.46905 * 111.00106 * 285.36143 * 18 2 1 20 20 C 1.46898 * 111.00282 * 49.32067 * 18 2 1 21 21 C 1.50702 * 109.47238 * 170.00299 * 20 18 2 22 22 H 1.07994 * 120.00100 * 359.97438 * 21 20 18 23 23 C 1.37877 * 119.99780 * 179.97438 * 21 20 18 24 24 N 1.31521 * 119.99752 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 120.00171 * 359.97438 * 23 21 20 26 26 H 1.48494 * 109.47256 * 90.00084 * 25 23 21 27 27 H 1.48499 * 109.47095 * 209.99882 * 25 23 21 28 28 H 1.48501 * 109.47041 * 330.00002 * 25 23 21 29 29 H 1.08995 * 109.46915 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46736 * 299.99567 * 1 2 3 31 31 H 1.08990 * 109.47390 * 59.99591 * 1 2 3 32 32 H 0.96996 * 119.99850 * 355.75982 * 6 4 2 33 33 H 1.07993 * 119.93229 * 359.96483 * 8 7 6 34 34 H 1.08000 * 120.09713 * 180.27913 * 9 8 7 35 35 H 1.07999 * 120.16895 * 180.02562 * 12 11 10 36 36 H 1.09001 * 109.21873 * 35.90485 * 14 13 11 37 37 H 1.08997 * 109.21257 * 155.24189 * 14 13 11 38 38 H 1.09002 * 108.90216 * 185.53707 * 15 14 13 39 39 H 1.08996 * 108.90418 * 304.14563 * 15 14 13 40 40 H 1.08996 * 109.21691 * 55.51162 * 16 15 14 41 41 H 1.08999 * 109.21165 * 174.84000 * 16 15 14 42 42 H 1.09000 * 109.47279 * 189.02252 * 19 18 2 43 43 H 1.08998 * 109.46950 * 309.02866 * 19 18 2 44 44 H 1.09002 * 109.46830 * 69.02861 * 19 18 2 45 45 H 1.09002 * 109.46591 * 289.99690 * 20 18 2 46 46 H 1.08994 * 109.47579 * 49.99617 * 20 18 2 47 47 H 0.97005 * 119.99597 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.6435 -1.7524 -1.1222 6 7 1.8024 -0.1877 -2.4514 7 6 2.3447 -0.7999 -3.5889 8 6 2.7630 -0.0236 -4.6614 9 6 3.3047 -0.6235 -5.7833 10 6 3.4177 -2.0025 -5.8395 11 6 2.9947 -2.7814 -4.7719 12 6 2.4581 -2.1832 -3.6450 13 8 3.1110 -4.1395 -4.8400 14 6 4.4440 -4.6542 -4.8219 15 6 5.0447 -4.6449 -6.2189 16 6 5.2157 -3.2364 -6.7658 17 8 3.9456 -2.6047 -6.9457 18 7 2.0197 -0.6926 1.1993 19 6 1.8527 0.1439 2.3954 20 6 1.3525 -1.9904 1.3671 21 6 2.0443 -2.7744 2.4525 22 1 2.8948 -2.3510 2.9659 23 6 1.5913 -4.0321 2.7899 24 7 2.1954 -4.7164 3.7368 25 14 0.1196 -4.7642 1.9023 26 1 0.5854 -5.5223 0.7135 27 1 -0.6067 -5.6790 2.8193 28 1 -0.7898 -3.6732 1.4687 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.2614 0.6122 -2.5425 33 1 2.6691 1.0514 -4.6174 34 1 3.6340 -0.0187 -6.6152 35 1 2.1291 -2.7888 -2.8135 36 1 5.0573 -4.0389 -4.1635 37 1 4.4286 -5.6767 -4.4448 38 1 6.0192 -5.1322 -6.1875 39 1 4.3915 -5.2052 -6.8878 40 1 5.8127 -2.6502 -6.0672 41 1 5.7314 -3.2842 -7.7249 42 1 2.3646 -0.3207 3.2381 43 1 2.2778 1.1305 2.2110 44 1 0.7916 0.2425 2.6244 45 1 0.3102 -1.8301 1.6429 46 1 1.3991 -2.5468 0.4310 47 1 1.8769 -5.6015 3.9739 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177189517.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:45 Heat of formation + Delta-G solvation = -85.804743 kcal Electronic energy + Delta-G solvation = -29642.666694 eV Core-core repulsion = 25597.918098 eV Total energy + Delta-G solvation = -4044.748596 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.11126 -41.28921 -39.10598 -38.49405 -37.85579 -35.64742 -34.76424 -33.62916 -32.14730 -31.33210 -29.84646 -29.34507 -27.50846 -26.73989 -25.41725 -24.32853 -23.24375 -22.62280 -22.19268 -20.76437 -19.60728 -19.13260 -18.75934 -18.37674 -17.67503 -17.11845 -16.66295 -16.47923 -16.39185 -16.09852 -15.88645 -15.53007 -15.25468 -15.15292 -14.96650 -14.79178 -14.74742 -14.47524 -14.41150 -13.87149 -13.67355 -13.44197 -13.18972 -13.11084 -12.96188 -12.88297 -12.61831 -12.31091 -12.23407 -12.00174 -11.95270 -11.88607 -11.57161 -11.42463 -11.20060 -10.93323 -10.81661 -10.56076 -9.83314 -9.07298 -8.97322 -8.31053 -6.30754 -0.04103 0.15452 1.24358 1.29119 1.36135 1.55846 1.85923 2.29039 2.40138 2.45796 2.85400 3.03295 3.25740 3.65001 3.66727 3.72931 3.87555 4.05063 4.10874 4.12603 4.15653 4.23222 4.29719 4.33293 4.38205 4.51199 4.59384 4.63500 4.70486 4.72212 4.76024 4.81710 4.90800 4.92574 5.00403 5.02728 5.18166 5.22140 5.24247 5.27157 5.30521 5.58911 5.69828 5.92131 6.09253 6.31543 6.44900 6.52002 6.65058 6.73992 7.22504 7.31004 8.86114 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012594 B = 0.003594 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.814042 B = 7789.934407 C = 9298.763527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.066 3.934 3 H 0.146 0.854 4 C 0.509 3.491 5 O -0.539 6.539 6 N -0.657 5.657 7 C 0.153 3.847 8 C -0.118 4.118 9 C -0.089 4.089 10 C 0.037 3.963 11 C 0.063 3.937 12 C -0.151 4.151 13 O -0.349 6.349 14 C 0.048 3.952 15 C -0.178 4.178 16 C 0.052 3.948 17 O -0.332 6.332 18 N -0.540 5.540 19 C 0.043 3.957 20 C 0.179 3.821 21 C -0.508 4.508 22 H 0.038 0.962 23 C 0.010 3.990 24 N -0.948 5.948 25 Si 0.937 3.063 26 H -0.282 1.282 27 H -0.273 1.273 28 H -0.248 1.248 29 H 0.034 0.966 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.432 0.568 33 H 0.181 0.819 34 H 0.173 0.827 35 H 0.109 0.891 36 H 0.049 0.951 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.134 0.866 42 H 0.044 0.956 43 H 0.091 0.909 44 H 0.030 0.970 45 H -0.006 1.006 46 H 0.020 0.980 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.060 14.383 -23.865 27.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.046 4.046 3 H 0.163 0.837 4 C 0.297 3.703 5 O -0.413 6.413 6 N -0.306 5.306 7 C 0.058 3.942 8 C -0.138 4.138 9 C -0.108 4.108 10 C -0.007 4.007 11 C 0.018 3.982 12 C -0.172 4.172 13 O -0.267 6.267 14 C -0.026 4.026 15 C -0.216 4.216 16 C -0.022 4.022 17 O -0.249 6.249 18 N -0.264 5.264 19 C -0.105 4.105 20 C 0.052 3.948 21 C -0.546 4.546 22 H 0.056 0.944 23 C -0.187 4.187 24 N -0.590 5.590 25 Si 0.761 3.239 26 H -0.208 1.208 27 H -0.199 1.199 28 H -0.172 1.172 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.121 0.879 32 H 0.273 0.727 33 H 0.198 0.802 34 H 0.190 0.810 35 H 0.127 0.873 36 H 0.068 0.932 37 H 0.128 0.872 38 H 0.139 0.861 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.152 0.848 42 H 0.063 0.937 43 H 0.110 0.890 44 H 0.048 0.952 45 H 0.011 0.989 46 H 0.038 0.962 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.775 13.262 -23.844 27.341 hybrid contribution -1.162 -1.032 0.695 1.703 sum 0.613 12.229 -23.149 26.188 Atomic orbital electron populations 1.22408 0.93763 1.02260 1.05235 1.21816 0.95375 0.99312 0.88115 0.83671 1.21396 0.78559 0.85112 0.85230 1.90780 1.40062 1.24014 1.86406 1.43391 1.52652 1.31375 1.03203 1.17726 0.97828 0.90217 0.88411 1.21221 0.99440 1.01615 0.91503 1.21229 0.98983 0.91384 0.99169 1.19312 1.01650 0.92286 0.87492 1.19192 1.01721 0.83615 0.93631 1.21125 1.04261 0.95064 0.96726 1.86290 1.29512 1.17592 1.93285 1.22885 0.81263 1.00442 0.97990 1.22438 1.03931 0.99148 0.96073 1.22929 0.82982 0.92197 1.04122 1.86364 1.36574 1.71593 1.30414 1.61636 1.58229 1.03768 1.02728 1.22234 0.99596 0.96682 0.91948 1.19900 0.91559 0.87893 0.95432 1.21313 1.14338 1.00954 1.18011 0.94393 1.25721 0.99891 0.97319 0.95772 1.70040 1.43195 1.13115 1.32606 0.85870 0.80305 0.79188 0.78497 1.20807 1.19862 1.17216 0.94662 0.89987 0.87871 0.72695 0.80176 0.80960 0.87254 0.93214 0.87160 0.86137 0.90343 0.92178 0.84846 0.93722 0.89016 0.95166 0.98897 0.96185 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.30 8.34 71.98 0.60 -3.70 16 2 C 0.07 1.91 2.70 44.17 0.12 2.03 16 3 H 0.15 2.87 7.85 -2.39 -0.02 2.85 16 4 C 0.51 16.77 6.69 87.66 0.59 17.36 16 5 O -0.54 -24.72 11.98 -3.09 -0.04 -24.76 16 6 N -0.66 -14.82 5.31 -303.35 -1.61 -16.43 16 7 C 0.15 3.91 6.30 38.12 0.24 4.15 16 8 C -0.12 -2.01 9.96 22.42 0.22 -1.79 16 9 C -0.09 -1.63 10.00 22.34 0.22 -1.40 16 10 C 0.04 0.95 5.73 22.45 0.13 1.08 16 11 C 0.06 2.02 5.73 22.44 0.13 2.15 16 12 C -0.15 -5.17 8.64 22.47 0.19 -4.97 16 13 O -0.35 -11.86 10.16 -84.31 -0.86 -12.71 16 14 C 0.05 1.23 6.51 71.67 0.47 1.70 16 15 C -0.18 -3.14 5.92 29.98 0.18 -2.96 16 16 C 0.05 0.88 6.51 71.67 0.47 1.35 16 17 O -0.33 -7.90 10.17 -85.24 -0.87 -8.76 16 18 N -0.54 -22.34 4.40 -906.04 -3.98 -26.33 16 19 C 0.04 1.51 9.02 127.69 1.15 2.66 16 20 C 0.18 9.11 2.34 85.56 0.20 9.31 16 21 C -0.51 -31.31 9.13 25.60 0.23 -31.08 16 22 H 0.04 2.58 7.34 -2.91 -0.02 2.56 16 23 C 0.01 0.61 5.47 84.65 0.46 1.07 16 24 N -0.95 -62.36 13.96 21.45 0.30 -62.06 16 25 Si 0.94 48.00 27.47 68.60 1.88 49.89 16 26 H -0.28 -14.68 7.11 99.48 0.71 -13.97 16 27 H -0.27 -13.31 7.11 99.48 0.71 -12.60 16 28 H -0.25 -11.75 6.54 99.48 0.65 -11.09 16 29 H 0.03 1.10 6.53 -2.39 -0.02 1.09 16 30 H 0.08 1.82 7.08 -2.38 -0.02 1.80 16 31 H 0.10 1.53 7.84 -2.39 -0.02 1.51 16 32 H 0.43 5.25 8.52 -92.71 -0.79 4.46 16 33 H 0.18 1.42 8.06 -2.91 -0.02 1.39 16 34 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.11 4.69 6.25 -2.91 -0.02 4.67 16 36 H 0.05 1.32 7.93 -2.39 -0.02 1.30 16 37 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.06 0.99 7.93 -2.39 -0.02 0.97 16 41 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.04 1.88 7.01 -2.39 -0.02 1.87 16 43 H 0.09 2.39 7.90 -2.39 -0.02 2.37 16 44 H 0.03 0.98 7.12 -2.39 -0.02 0.96 16 45 H -0.01 -0.32 5.84 -2.39 -0.01 -0.33 16 46 H 0.02 1.11 5.47 -2.39 -0.01 1.10 16 47 H 0.27 16.29 8.31 -92.70 -0.77 15.52 16 Total: -1.00 -89.82 370.80 0.58 -89.24 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.15 Total: 14.97 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 5.60 Total: -3.04 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -5.30 Total: -104.82 kcal Atomic # 8 Polarization: -44.47 SS G_CDS: -1.76 Total: -46.23 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 1.88 Total: 49.89 kcal Total: -89.82 0.58 -89.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177189517.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.432 kcal (2) G-P(sol) polarization free energy of solvation -89.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds