Wall clock time and date at job start Tue Mar 31 2020 18:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34710 * 116.99875 * 2 1 4 4 O 1.21469 * 120.00155 * 359.97438 * 3 2 1 5 5 C 1.47726 * 120.00045 * 179.97438 * 3 2 1 6 6 C 1.39628 * 120.15027 * 179.97438 * 5 3 2 7 7 C 1.37943 * 119.84868 * 180.02562 * 6 5 3 8 8 C 1.38375 * 120.14975 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.84803 * 179.97438 * 8 7 6 10 10 N 1.46495 * 109.47138 * 90.00021 * 9 8 7 11 11 C 1.34783 * 120.00063 * 179.97438 * 10 9 8 12 12 O 1.21285 * 119.99519 * 0.02562 * 11 10 9 13 13 C 1.50693 * 120.00123 * 180.02562 * 11 10 9 14 14 H 1.09000 * 109.47066 * 60.00257 * 13 11 10 15 15 C 1.53006 * 109.47244 * 300.00312 * 13 11 10 16 16 N 1.46906 * 109.47155 * 180.02562 * 13 11 10 17 17 C 1.46893 * 111.00136 * 66.04479 * 16 13 11 18 18 C 1.46901 * 110.99853 * 190.00173 * 16 13 11 19 19 C 1.50701 * 109.46921 * 169.99766 * 18 16 13 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 16 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 16 22 22 N 1.31510 * 119.99913 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99734 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47294 * 60.00559 * 23 21 19 25 25 H 1.48503 * 109.46954 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47431 * 300.00157 * 23 21 19 27 27 C 1.38365 * 120.30239 * 0.23627 * 8 7 6 28 28 C 1.37950 * 120.14966 * 359.48482 * 27 8 7 29 29 H 1.08997 * 109.47206 * 300.00351 * 1 2 3 30 30 H 1.09003 * 109.47526 * 60.00250 * 1 2 3 31 31 H 1.09000 * 109.47334 * 180.02562 * 1 2 3 32 32 H 1.08003 * 120.07521 * 0.02562 * 6 5 3 33 33 H 1.07997 * 119.92858 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47235 * 330.00163 * 9 8 7 35 35 H 1.09002 * 109.47162 * 210.00561 * 9 8 7 36 36 H 0.96996 * 120.00458 * 0.02562 * 10 9 8 37 37 H 1.09001 * 109.47141 * 179.97438 * 15 13 11 38 38 H 1.09000 * 109.47044 * 299.99959 * 15 13 11 39 39 H 1.09002 * 109.46733 * 60.00005 * 15 13 11 40 40 H 1.08999 * 109.47439 * 183.95618 * 17 16 13 41 41 H 1.08997 * 109.47257 * 303.95746 * 17 16 13 42 42 H 1.09006 * 109.46808 * 63.95302 * 17 16 13 43 43 H 1.09002 * 109.47401 * 49.99794 * 18 16 13 44 44 H 1.09001 * 109.46874 * 289.99807 * 18 16 13 45 45 H 0.97002 * 119.99768 * 179.97438 * 22 21 19 46 46 H 1.07998 * 119.92876 * 179.71923 * 27 8 7 47 47 H 1.07998 * 120.07970 * 180.25735 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2777 0.0006 6 6 4.1759 2.5201 0.0000 7 6 5.5538 2.5851 0.0000 8 6 6.3044 1.4226 0.0000 9 6 7.8093 1.5015 -0.0005 10 7 8.2975 1.5274 1.3804 11 6 9.6209 1.5964 1.6262 12 8 10.4075 1.6374 0.7040 13 6 10.1231 1.6224 3.0468 14 1 9.8068 0.7147 3.5607 15 6 9.5490 2.8434 3.7684 16 7 11.5901 1.6995 3.0462 17 6 12.0499 2.9787 2.4895 18 6 12.1288 1.4889 4.3965 19 6 13.6255 1.3298 4.3211 20 1 14.1265 1.3805 3.3656 21 6 14.3555 1.1207 5.4719 22 7 13.7455 1.0595 6.6354 23 14 16.2107 0.9242 5.3784 24 1 16.8094 2.1501 4.7918 25 1 16.7553 0.7112 6.7435 26 1 16.5423 -0.2455 4.5257 27 6 5.6795 0.1881 -0.0049 28 6 4.3023 0.1086 0.0009 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.5912 3.4282 -0.0004 33 1 6.0479 3.5454 0.0000 34 1 8.1253 2.4092 -0.5147 35 1 8.2185 0.6317 -0.5144 36 1 7.6684 1.4942 2.1180 37 1 9.9119 2.8620 4.7961 38 1 9.8653 3.7511 3.2545 39 1 8.4605 2.7866 3.7688 40 1 13.1385 2.9813 2.4357 41 1 11.6364 3.1093 1.4895 42 1 11.7158 3.7948 3.1302 43 1 11.6891 0.5893 4.8270 44 1 11.8858 2.3475 5.0226 45 1 14.2590 0.9119 7.4451 46 1 6.2712 -0.7153 -0.0094 47 1 3.8158 -0.8556 0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177190479.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:44 Heat of formation + Delta-G solvation = -83.819964 kcal Electronic energy + Delta-G solvation = -27609.779565 eV Core-core repulsion = 23565.117036 eV Total energy + Delta-G solvation = -4044.662530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.03334 -39.99742 -39.20740 -36.91529 -36.54815 -34.92383 -32.76406 -32.14182 -31.52591 -30.13968 -28.45180 -27.06214 -26.69629 -25.37056 -23.82690 -23.18975 -22.86541 -21.12635 -20.82570 -19.39606 -18.52531 -17.58756 -17.03499 -16.81029 -16.33005 -16.14550 -15.79365 -15.35256 -15.05739 -14.97018 -14.53949 -14.21556 -14.02220 -13.92867 -13.84255 -13.73469 -13.51512 -12.94891 -12.80493 -12.79337 -12.57255 -12.21587 -11.98743 -11.90703 -11.58190 -11.45965 -11.28643 -11.06929 -10.99705 -10.93078 -10.82406 -10.65795 -10.41178 -9.94905 -9.62174 -9.49405 -9.32052 -9.06243 -8.96310 -8.41105 -7.17706 -6.01262 -4.01596 0.12848 0.88242 2.01930 2.19582 2.95516 3.09964 3.36548 3.39670 3.43662 3.52442 4.11667 4.29279 4.38308 4.45264 4.47818 4.63875 4.71936 4.82552 4.86571 4.98370 5.03300 5.04765 5.25990 5.29198 5.34678 5.44305 5.49797 5.54319 5.58413 5.68161 5.77819 5.88840 5.92599 6.06684 6.07945 6.29981 6.32440 6.35018 6.45618 6.52206 6.93462 7.25253 7.25866 7.34263 7.55638 7.83049 8.07712 8.21184 8.48124 8.57974 9.06187 9.62314 11.09625 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028084 B = 0.001772 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.783575 B =15794.225743 C =16060.129998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.509 3.491 4 O -0.506 6.506 5 C -0.126 4.126 6 C -0.055 4.055 7 C -0.112 4.112 8 C -0.065 4.065 9 C 0.156 3.844 10 N -0.736 5.736 11 C 0.522 3.478 12 O -0.516 6.516 13 C 0.065 3.935 14 H 0.101 0.899 15 C -0.181 4.181 16 N -0.517 5.517 17 C 0.032 3.968 18 C 0.193 3.807 19 C -0.506 4.506 20 H 0.064 0.936 21 C 0.055 3.945 22 N -0.900 5.900 23 Si 0.899 3.101 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.276 1.276 27 C -0.114 4.114 28 C -0.062 4.062 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.399 0.601 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.011 0.989 43 H 0.029 0.971 44 H -0.005 1.005 45 H 0.261 0.739 46 H 0.137 0.863 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.288 -0.525 -13.074 29.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.354 3.646 4 O -0.395 6.395 5 C -0.127 4.127 6 C -0.073 4.073 7 C -0.131 4.131 8 C -0.066 4.066 9 C 0.033 3.967 10 N -0.391 5.391 11 C 0.309 3.691 12 O -0.389 6.389 13 C -0.048 4.048 14 H 0.119 0.881 15 C -0.240 4.240 16 N -0.241 5.241 17 C -0.116 4.116 18 C 0.069 3.931 19 C -0.544 4.544 20 H 0.082 0.918 21 C -0.146 4.146 22 N -0.540 5.540 23 Si 0.727 3.273 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.202 1.202 27 C -0.132 4.132 28 C -0.080 4.080 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.234 0.766 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.029 0.971 43 H 0.047 0.953 44 H 0.013 0.987 45 H 0.071 0.929 46 H 0.155 0.845 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -25.674 -0.618 -13.868 29.186 hybrid contribution 0.027 0.516 1.005 1.130 sum -25.647 -0.102 -12.863 28.692 Atomic orbital electron populations 1.23315 0.75672 1.03973 1.02757 1.86542 1.23801 1.32549 1.84236 1.21254 0.89193 0.81498 0.72640 1.90844 1.66820 1.36046 1.45748 1.19137 0.88902 0.95207 1.09465 1.21276 0.94543 0.96774 0.94716 1.21118 0.93037 0.98739 1.00179 1.20300 0.95708 0.93456 0.97103 1.20199 0.87989 1.03591 0.84912 1.46107 1.07759 1.77815 1.07463 1.20959 0.81068 0.74936 0.92171 1.90657 1.54808 1.47272 1.46196 1.21628 0.92636 0.99541 0.91010 0.88130 1.22414 1.00146 0.98999 1.02430 1.62064 1.02377 1.33032 1.26601 1.22358 1.01920 0.89098 0.98259 1.19789 0.95442 0.95883 0.82022 1.21133 0.91419 1.48510 0.93354 0.91794 1.24972 0.98809 0.95544 0.95288 1.69944 1.35805 1.50344 0.97923 0.86540 0.85140 0.78753 0.76853 1.20281 1.21421 1.20152 1.21180 0.94243 0.97829 0.99959 1.21485 0.93754 0.98014 0.94757 0.91683 0.91725 0.87779 0.84296 0.84533 0.90414 0.90264 0.76638 0.90737 0.91991 0.92811 0.91015 0.91965 0.97093 0.95305 0.98684 0.92929 0.84532 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.56 101.05 1.07 1.25 16 2 O -0.35 -2.81 9.82 -40.52 -0.40 -3.21 16 3 C 0.51 4.83 7.90 34.61 0.27 5.10 16 4 O -0.51 -5.97 16.14 -19.24 -0.31 -6.28 16 5 C -0.13 -1.06 5.87 -104.98 -0.62 -1.67 16 6 C -0.05 -0.43 9.60 -39.17 -0.38 -0.81 16 7 C -0.11 -0.82 9.68 -39.64 -0.38 -1.20 16 8 C -0.07 -0.50 5.25 -104.53 -0.55 -1.05 16 9 C 0.16 1.48 5.79 -5.20 -0.03 1.45 16 10 N -0.74 -8.13 5.44 -61.48 -0.33 -8.46 16 11 C 0.52 8.25 6.85 -10.99 -0.08 8.17 16 12 O -0.52 -10.09 14.33 5.55 0.08 -10.02 16 13 C 0.06 1.11 2.73 -68.86 -0.19 0.92 16 14 H 0.10 1.66 7.93 -51.93 -0.41 1.25 16 15 C -0.18 -2.66 8.34 37.16 0.31 -2.35 16 16 N -0.52 -11.42 4.44 -237.73 -1.06 -12.48 16 17 C 0.03 0.67 8.31 60.06 0.50 1.17 16 18 C 0.19 4.97 4.29 -4.97 -0.02 4.95 16 19 C -0.51 -14.34 8.52 -34.44 -0.29 -14.64 16 20 H 0.06 1.83 7.10 -52.49 -0.37 1.45 16 21 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 22 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 23 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C -0.11 -0.79 9.68 -39.64 -0.38 -1.18 16 28 C -0.06 -0.44 9.62 -39.17 -0.38 -0.81 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.14 1.04 7.65 -52.48 -0.40 0.64 16 33 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 35 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 36 H 0.40 3.57 7.88 -40.82 -0.32 3.25 16 37 H 0.07 1.23 6.91 -51.93 -0.36 0.87 16 38 H 0.06 0.93 6.41 -51.93 -0.33 0.60 16 39 H 0.05 0.60 7.56 -51.93 -0.39 0.21 16 40 H 0.07 1.61 6.86 -51.93 -0.36 1.25 16 41 H 0.06 1.25 5.83 -51.93 -0.30 0.95 16 42 H 0.01 0.21 6.46 -51.93 -0.34 -0.12 16 43 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 44 H 0.00 -0.12 7.06 -51.93 -0.37 -0.49 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.14 0.78 7.61 -52.49 -0.40 0.38 16 LS Contribution 390.96 15.07 5.89 5.89 Total: -1.00 -34.52 390.96 -8.50 -43.02 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.85 Total: -0.29 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.24 Total: 0.77 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -0.65 Total: -46.73 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.63 Total: -19.50 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.52 -8.50 -43.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177190479.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.797 kcal (2) G-P(sol) polarization free energy of solvation -34.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds