Wall clock time and date at job start Tue Mar 31 2020 18:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34710 * 116.99875 * 2 1 4 4 O 1.21469 * 120.00155 * 359.97438 * 3 2 1 5 5 C 1.47726 * 120.00045 * 179.97438 * 3 2 1 6 6 C 1.39628 * 120.15027 * 179.97438 * 5 3 2 7 7 C 1.37943 * 119.84868 * 180.02562 * 6 5 3 8 8 C 1.38375 * 120.14975 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.84803 * 179.97438 * 8 7 6 10 10 N 1.46495 * 109.47138 * 90.00021 * 9 8 7 11 11 C 1.34783 * 120.00063 * 179.97438 * 10 9 8 12 12 O 1.21285 * 119.99519 * 0.02562 * 11 10 9 13 13 C 1.50693 * 120.00123 * 180.02562 * 11 10 9 14 14 H 1.09000 * 109.47066 * 60.00257 * 13 11 10 15 15 C 1.53006 * 109.47244 * 300.00312 * 13 11 10 16 16 N 1.46906 * 109.47155 * 180.02562 * 13 11 10 17 17 C 1.46893 * 111.00136 * 66.04479 * 16 13 11 18 18 C 1.46901 * 110.99853 * 190.00173 * 16 13 11 19 19 C 1.50701 * 109.46921 * 169.99766 * 18 16 13 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 16 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 16 22 22 N 1.31510 * 119.99913 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99734 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47294 * 60.00559 * 23 21 19 25 25 H 1.48503 * 109.46954 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47431 * 300.00157 * 23 21 19 27 27 C 1.38365 * 120.30239 * 0.23627 * 8 7 6 28 28 C 1.37950 * 120.14966 * 359.48482 * 27 8 7 29 29 H 1.08997 * 109.47206 * 300.00351 * 1 2 3 30 30 H 1.09003 * 109.47526 * 60.00250 * 1 2 3 31 31 H 1.09000 * 109.47334 * 180.02562 * 1 2 3 32 32 H 1.08003 * 120.07521 * 0.02562 * 6 5 3 33 33 H 1.07997 * 119.92858 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47235 * 330.00163 * 9 8 7 35 35 H 1.09002 * 109.47162 * 210.00561 * 9 8 7 36 36 H 0.96996 * 120.00458 * 0.02562 * 10 9 8 37 37 H 1.09001 * 109.47141 * 179.97438 * 15 13 11 38 38 H 1.09000 * 109.47044 * 299.99959 * 15 13 11 39 39 H 1.09002 * 109.46733 * 60.00005 * 15 13 11 40 40 H 1.08999 * 109.47439 * 183.95618 * 17 16 13 41 41 H 1.08997 * 109.47257 * 303.95746 * 17 16 13 42 42 H 1.09006 * 109.46808 * 63.95302 * 17 16 13 43 43 H 1.09002 * 109.47401 * 49.99794 * 18 16 13 44 44 H 1.09001 * 109.46874 * 289.99807 * 18 16 13 45 45 H 0.97002 * 119.99768 * 179.97438 * 22 21 19 46 46 H 1.07998 * 119.92876 * 179.71923 * 27 8 7 47 47 H 1.07998 * 120.07970 * 180.25735 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2777 0.0006 6 6 4.1759 2.5201 0.0000 7 6 5.5538 2.5851 0.0000 8 6 6.3044 1.4226 0.0000 9 6 7.8093 1.5015 -0.0005 10 7 8.2975 1.5274 1.3804 11 6 9.6209 1.5964 1.6262 12 8 10.4075 1.6374 0.7040 13 6 10.1231 1.6224 3.0468 14 1 9.8068 0.7147 3.5607 15 6 9.5490 2.8434 3.7684 16 7 11.5901 1.6995 3.0462 17 6 12.0499 2.9787 2.4895 18 6 12.1288 1.4889 4.3965 19 6 13.6255 1.3298 4.3211 20 1 14.1265 1.3805 3.3656 21 6 14.3555 1.1207 5.4719 22 7 13.7455 1.0595 6.6354 23 14 16.2107 0.9242 5.3784 24 1 16.8094 2.1501 4.7918 25 1 16.7553 0.7112 6.7435 26 1 16.5423 -0.2455 4.5257 27 6 5.6795 0.1881 -0.0049 28 6 4.3023 0.1086 0.0009 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.5912 3.4282 -0.0004 33 1 6.0479 3.5454 0.0000 34 1 8.1253 2.4092 -0.5147 35 1 8.2185 0.6317 -0.5144 36 1 7.6684 1.4942 2.1180 37 1 9.9119 2.8620 4.7961 38 1 9.8653 3.7511 3.2545 39 1 8.4605 2.7866 3.7688 40 1 13.1385 2.9813 2.4357 41 1 11.6364 3.1093 1.4895 42 1 11.7158 3.7948 3.1302 43 1 11.6891 0.5893 4.8270 44 1 11.8858 2.3475 5.0226 45 1 14.2590 0.9119 7.4451 46 1 6.2712 -0.7153 -0.0094 47 1 3.8158 -0.8556 0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177190479.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:43 Heat of formation + Delta-G solvation = -106.956555 kcal Electronic energy + Delta-G solvation = -27610.782843 eV Core-core repulsion = 23565.117036 eV Total energy + Delta-G solvation = -4045.665807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.69968 -41.14025 -39.99631 -38.12042 -37.56437 -35.96090 -34.79541 -33.09948 -32.09775 -31.52310 -29.14171 -28.90129 -27.46866 -26.99367 -25.27887 -23.86581 -23.70261 -22.39188 -21.73469 -20.75476 -19.14932 -18.68233 -18.23557 -17.92831 -17.44465 -17.35454 -16.72741 -16.51931 -16.10391 -16.06222 -15.64771 -15.52340 -15.37545 -15.02121 -14.57735 -14.53260 -14.43494 -14.26356 -14.11038 -13.79463 -13.51662 -13.39412 -13.07433 -13.04616 -12.86331 -12.72856 -12.65666 -12.46697 -12.34851 -12.19583 -12.08954 -11.92077 -11.86100 -11.70386 -11.37264 -10.68671 -10.58152 -10.08987 -10.02368 -10.00691 -8.91720 -8.18391 -6.27049 -0.50888 0.33096 1.33166 1.42272 1.45050 1.52997 1.63444 1.70039 2.17739 2.43258 2.77201 3.14050 3.39653 3.47110 3.69332 3.79380 3.87819 3.94431 4.12949 4.19077 4.22519 4.28011 4.30916 4.31814 4.58747 4.62014 4.64367 4.66639 4.69847 4.72733 4.80373 4.87478 5.01320 5.09354 5.10799 5.14215 5.22165 5.29796 5.31795 5.35540 5.44875 5.47396 5.67176 5.76574 6.06243 6.34116 6.47510 6.58685 6.71709 6.87851 7.32701 7.41950 8.91789 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028084 B = 0.001772 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.783575 B =15794.225743 C =16060.129998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.509 3.491 4 O -0.537 6.537 5 C -0.137 4.137 6 C -0.061 4.061 7 C -0.108 4.108 8 C -0.065 4.065 9 C 0.159 3.841 10 N -0.713 5.713 11 C 0.529 3.471 12 O -0.558 6.558 13 C 0.058 3.942 14 H 0.106 0.894 15 C -0.170 4.170 16 N -0.535 5.535 17 C 0.043 3.957 18 C 0.211 3.789 19 C -0.528 4.528 20 H 0.055 0.945 21 C 0.006 3.994 22 N -0.930 5.930 23 Si 0.965 3.035 24 H -0.270 1.270 25 H -0.280 1.280 26 H -0.272 1.272 27 C -0.111 4.111 28 C -0.057 4.057 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.149 0.851 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.413 0.587 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.095 0.905 40 H 0.048 0.952 41 H 0.072 0.928 42 H 0.018 0.982 43 H 0.009 0.991 44 H -0.023 1.023 45 H 0.265 0.735 46 H 0.151 0.849 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.181 -1.044 -13.667 30.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.355 3.645 4 O -0.429 6.429 5 C -0.139 4.139 6 C -0.080 4.080 7 C -0.127 4.127 8 C -0.065 4.065 9 C 0.037 3.963 10 N -0.368 5.368 11 C 0.316 3.684 12 O -0.435 6.435 13 C -0.055 4.055 14 H 0.124 0.876 15 C -0.229 4.229 16 N -0.259 5.259 17 C -0.106 4.106 18 C 0.085 3.915 19 C -0.566 4.566 20 H 0.073 0.927 21 C -0.192 4.192 22 N -0.570 5.570 23 Si 0.790 3.210 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.197 1.197 27 C -0.129 4.129 28 C -0.075 4.075 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.153 0.847 32 H 0.156 0.844 33 H 0.167 0.833 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.250 0.750 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.037 0.963 43 H 0.027 0.973 44 H -0.005 1.005 45 H 0.073 0.927 46 H 0.169 0.831 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -26.633 -1.150 -14.463 30.328 hybrid contribution 0.148 0.631 1.155 1.324 sum -26.485 -0.519 -13.308 29.645 Atomic orbital electron populations 1.23600 0.74205 1.05976 1.02651 1.86536 1.25295 1.31681 1.83722 1.21503 0.89661 0.81485 0.71816 1.90825 1.67544 1.37039 1.47445 1.19261 0.88537 0.95960 1.10117 1.21342 0.94855 0.96781 0.94977 1.21219 0.92708 0.99243 0.99484 1.20133 0.94449 0.93961 0.97974 1.20241 0.89065 1.03584 0.83455 1.45856 1.06237 1.75651 1.09011 1.20553 0.82271 0.74838 0.90771 1.90645 1.56240 1.49724 1.46898 1.21742 0.89850 1.00997 0.92885 0.87619 1.22303 1.02666 0.97441 1.00506 1.61883 1.05866 1.33876 1.24259 1.22226 1.00493 0.88993 0.98847 1.19403 0.94357 0.94041 0.83663 1.21442 0.93056 1.48887 0.93203 0.92658 1.25811 1.03597 0.94981 0.94853 1.70048 1.37604 1.50817 0.98527 0.85498 0.79384 0.78909 0.77181 1.19523 1.20548 1.19682 1.21344 0.94306 0.98113 0.99122 1.21625 0.93705 0.98214 0.93965 0.91893 0.91803 0.84743 0.84360 0.83301 0.90408 0.90432 0.75026 0.92859 0.92238 0.88590 0.93280 0.90912 0.96316 0.97310 1.00530 0.92659 0.83124 0.82668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.45 16 2 O -0.36 -5.17 9.82 -56.20 -0.55 -5.72 16 3 C 0.51 9.26 7.90 70.33 0.56 9.81 16 4 O -0.54 -12.62 16.14 19.94 0.32 -12.30 16 5 C -0.14 -2.11 5.87 -20.10 -0.12 -2.23 16 6 C -0.06 -0.89 9.60 22.54 0.22 -0.67 16 7 C -0.11 -1.34 9.68 22.23 0.22 -1.13 16 8 C -0.06 -0.83 5.25 -19.80 -0.10 -0.93 16 9 C 0.16 2.64 5.79 85.63 0.50 3.14 16 10 N -0.71 -14.02 5.44 -466.80 -2.54 -16.56 16 11 C 0.53 15.97 6.85 87.65 0.60 16.57 16 12 O -0.56 -21.42 14.33 -3.04 -0.04 -21.47 16 13 C 0.06 1.94 2.73 44.17 0.12 2.06 16 14 H 0.11 3.41 7.93 -2.39 -0.02 3.39 16 15 C -0.17 -4.78 8.34 71.98 0.60 -4.18 16 16 N -0.54 -23.91 4.44 -906.04 -4.02 -27.93 16 17 C 0.04 1.80 8.31 127.69 1.06 2.86 16 18 C 0.21 11.15 4.29 85.56 0.37 11.52 16 19 C -0.53 -30.51 8.52 25.60 0.22 -30.29 16 20 H 0.06 3.22 7.10 -2.91 -0.02 3.20 16 21 C 0.01 0.34 5.46 84.66 0.46 0.80 16 22 N -0.93 -55.31 13.29 21.45 0.28 -55.03 16 23 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 27 C -0.11 -1.25 9.68 22.23 0.22 -1.04 16 28 C -0.06 -0.68 9.62 22.54 0.22 -0.46 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.14 1.98 7.65 -2.91 -0.02 1.96 16 33 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 34 H 0.08 1.36 8.08 -2.39 -0.02 1.34 16 35 H 0.08 1.38 8.08 -2.39 -0.02 1.36 16 36 H 0.41 6.06 7.88 -92.71 -0.73 5.33 16 37 H 0.05 1.74 6.91 -2.39 -0.02 1.72 16 38 H 0.06 1.70 6.41 -2.39 -0.02 1.69 16 39 H 0.10 1.85 7.56 -2.39 -0.02 1.83 16 40 H 0.05 2.25 6.86 -2.39 -0.02 2.23 16 41 H 0.07 2.92 5.83 -2.39 -0.01 2.91 16 42 H 0.02 0.74 6.46 -2.38 -0.02 0.73 16 43 H 0.01 0.49 7.93 -2.39 -0.02 0.47 16 44 H -0.02 -1.27 7.06 -2.39 -0.02 -1.29 16 45 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 46 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 47 H 0.16 1.33 7.61 -2.91 -0.02 1.31 16 Total: -1.00 -75.44 390.96 2.06 -73.38 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.26 Total: 11.39 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 6.32 Total: 7.29 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -6.28 Total: -99.52 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -0.27 Total: -39.49 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -75.44 2.06 -73.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177190479.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.577 kcal (2) G-P(sol) polarization free energy of solvation -75.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds