Wall clock time and date at job start Tue Mar 31 2020 18:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46908 * 2 1 4 4 C 1.46497 * 119.99686 * 269.99577 * 3 2 1 5 5 C 1.53001 * 109.47480 * 270.00239 * 4 3 2 6 6 C 1.39054 * 119.99996 * 90.00413 * 3 2 1 7 7 C 1.39239 * 119.92218 * 0.24171 * 6 3 2 8 8 C 1.37118 * 120.06972 * 180.26009 * 7 6 3 9 9 C 1.39863 * 119.92680 * 359.49422 * 8 7 6 10 10 C 1.47411 * 120.07594 * 180.27725 * 9 8 7 11 11 O 1.21635 * 120.00266 * 322.30065 * 10 9 8 12 12 N 1.34779 * 120.00185 * 142.29888 * 10 9 8 13 13 C 1.36900 * 120.00264 * 186.79589 * 12 10 9 14 14 H 1.08003 * 120.00121 * 135.98330 * 13 12 10 15 15 C 1.39016 * 120.00216 * 315.98201 * 13 12 10 16 16 N 1.31387 * 119.99989 * 338.42247 * 15 13 12 17 17 Si 1.86799 * 120.00376 * 158.41622 * 15 13 12 18 18 H 1.48495 * 109.47012 * 89.99772 * 17 15 13 19 19 H 1.48494 * 109.47396 * 210.00588 * 17 15 13 20 20 H 1.48510 * 109.46954 * 330.00380 * 17 15 13 21 21 C 1.46504 * 119.99774 * 6.79797 * 12 10 9 22 22 C 1.50695 * 109.47171 * 100.83072 * 21 12 10 23 23 O 1.20823 * 120.00182 * 0.02562 * 22 21 12 24 24 O 1.34226 * 120.00255 * 179.97438 * 22 21 12 25 25 C 1.45196 * 117.00263 * 180.02562 * 24 22 21 26 26 C 1.39857 * 119.85084 * 0.25691 * 9 8 7 27 27 C 1.37121 * 119.92278 * 359.97438 * 26 9 8 28 28 H 1.08993 * 109.47125 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47178 * 300.00038 * 1 2 3 30 30 H 1.09001 * 109.47052 * 59.99982 * 1 2 3 31 31 H 1.09001 * 109.46809 * 240.00276 * 2 1 3 32 32 H 1.08992 * 109.46937 * 120.00171 * 2 1 3 33 33 H 1.09002 * 109.47431 * 30.00852 * 4 3 2 34 34 H 1.09004 * 109.46775 * 150.00527 * 4 3 2 35 35 H 1.09004 * 109.46881 * 60.00353 * 5 4 3 36 36 H 1.09001 * 109.47327 * 180.02562 * 5 4 3 37 37 H 1.09002 * 109.46764 * 300.00712 * 5 4 3 38 38 H 1.07994 * 119.96861 * 0.02562 * 7 6 3 39 39 H 1.07999 * 120.03698 * 179.77635 * 8 7 6 40 40 H 0.96994 * 120.00257 * 185.05033 * 16 15 13 41 41 H 1.09003 * 109.47008 * 220.83375 * 21 12 10 42 42 H 1.09004 * 109.46867 * 340.83306 * 21 12 10 43 43 H 1.08995 * 109.47215 * 60.00848 * 25 24 22 44 44 H 1.09008 * 109.47205 * 180.02562 * 25 24 22 45 45 H 1.08999 * 109.47192 * 300.00277 * 25 24 22 46 46 H 1.07993 * 120.03924 * 180.02562 * 26 9 8 47 47 H 1.08000 * 119.96424 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7104 6 6 2.2501 2.0368 1.2042 7 6 2.0224 1.3771 2.4091 8 6 2.2449 2.0223 3.5984 9 6 2.7112 3.3410 3.6002 10 6 2.9573 4.0357 4.8768 11 8 2.2111 3.8566 5.8205 12 7 4.0093 4.8695 4.9985 13 6 4.3199 5.4061 6.2190 14 1 5.3479 5.4391 6.5486 15 6 3.3122 5.9085 7.0343 16 7 2.1605 6.2644 6.5116 17 14 3.5954 6.0775 8.8729 18 1 4.1598 7.4195 9.1655 19 1 2.3048 5.9162 9.5895 20 1 4.5469 5.0309 9.3255 21 6 4.8203 5.2015 3.8245 22 6 4.4219 6.5595 3.3065 23 8 3.5504 7.1859 3.8614 24 8 5.0360 7.0736 2.2294 25 6 4.6014 8.3864 1.7867 26 6 2.9438 3.9988 2.3881 27 6 2.7147 3.3493 1.2024 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.5817 1.6877 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 3.8745 0.7621 -1.8408 36 1 3.8893 2.3455 -2.6542 37 1 4.3883 2.2155 -0.9507 38 1 1.6666 0.3575 2.4071 39 1 2.0647 1.5114 4.5326 40 1 1.4843 6.6826 7.0672 41 1 5.8742 5.2135 4.1025 42 1 4.6579 4.4544 3.0476 43 1 4.7586 9.1100 2.5865 44 1 5.1768 8.6830 0.9097 45 1 3.5423 8.3514 1.5312 46 1 3.3042 5.0168 2.3860 47 1 2.8945 3.8565 0.2661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180441735.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:01 Heat of formation + Delta-G solvation = -42.230337 kcal Electronic energy + Delta-G solvation = -30065.626256 eV Core-core repulsion = 26022.767188 eV Total energy + Delta-G solvation = -4042.859068 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.12395 -39.40757 -38.13636 -36.20796 -35.61135 -34.00872 -32.62647 -32.02711 -30.61424 -30.33913 -28.35833 -27.89604 -26.22244 -24.74418 -24.07966 -22.95585 -21.71125 -20.84717 -20.25099 -19.33775 -17.50505 -16.90497 -16.81030 -16.28345 -16.03341 -15.82954 -15.26856 -14.64634 -14.62009 -14.48835 -14.07936 -13.98460 -13.51238 -13.50305 -13.22848 -13.13193 -12.88468 -12.64260 -12.46132 -12.34591 -12.16360 -12.01935 -11.87751 -11.57627 -11.51206 -11.31725 -11.20069 -11.10488 -10.88663 -10.76356 -10.55453 -10.27265 -10.15820 -10.11572 -9.55806 -9.50361 -8.69989 -8.54005 -8.10704 -7.13499 -6.99915 -5.95490 -3.74647 1.75830 1.86079 3.07469 3.12762 3.27970 3.37962 3.46852 3.49431 4.05220 4.37925 4.72090 4.72721 4.81561 4.97356 4.99673 5.15559 5.21182 5.24552 5.31860 5.35200 5.38761 5.44771 5.47288 5.54491 5.59248 5.61855 5.66880 5.73707 5.78269 5.80686 5.89594 5.90127 5.98245 6.02983 6.09682 6.11359 6.16659 6.43177 6.57156 6.79567 7.06165 7.12629 7.14463 7.38350 7.68243 7.71761 8.32546 8.67104 9.08810 9.19851 9.68594 10.29168 11.10016 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013066 B = 0.004008 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.528417 B = 6983.908831 C = 8614.992667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.120 3.880 3 N -0.628 5.628 4 C 0.119 3.881 5 C -0.172 4.172 6 C 0.217 3.783 7 C -0.202 4.202 8 C -0.030 4.030 9 C -0.153 4.153 10 C 0.522 3.478 11 O -0.520 6.520 12 N -0.426 5.426 13 C -0.366 4.366 14 H 0.081 0.919 15 C 0.082 3.918 16 N -0.796 5.796 17 Si 0.908 3.092 18 H -0.284 1.284 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.096 3.904 22 C 0.416 3.584 23 O -0.446 6.446 24 O -0.379 6.379 25 C 0.037 3.963 26 C -0.064 4.064 27 C -0.201 4.201 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.261 0.739 41 H 0.095 0.905 42 H 0.113 0.887 43 H 0.056 0.944 44 H 0.090 0.910 45 H 0.055 0.945 46 H 0.122 0.878 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.563 -8.220 -18.084 20.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.003 4.003 3 N -0.340 5.340 4 C -0.004 4.004 5 C -0.231 4.231 6 C 0.116 3.884 7 C -0.224 4.224 8 C -0.050 4.050 9 C -0.159 4.159 10 C 0.310 3.690 11 O -0.397 6.397 12 N -0.148 5.148 13 C -0.493 4.493 14 H 0.098 0.902 15 C -0.132 4.132 16 N -0.426 5.426 17 Si 0.735 3.265 18 H -0.210 1.210 19 H -0.210 1.210 20 H -0.195 1.195 21 C -0.031 4.031 22 C 0.254 3.746 23 O -0.327 6.327 24 O -0.297 6.297 25 C -0.058 4.058 26 C -0.083 4.083 27 C -0.223 4.223 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.138 0.862 39 H 0.144 0.856 40 H 0.071 0.929 41 H 0.113 0.887 42 H 0.131 0.869 43 H 0.075 0.925 44 H 0.108 0.892 45 H 0.074 0.926 46 H 0.140 0.860 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.605 -8.147 -17.506 19.375 hybrid contribution -0.069 0.680 0.654 0.946 sum 1.536 -7.468 -16.851 18.496 Atomic orbital electron populations 1.22240 0.96618 1.01703 1.02636 1.21336 0.93843 0.82757 1.02381 1.46404 1.71672 1.13006 1.02870 1.21343 0.96053 0.97931 0.85092 1.22234 0.97610 1.01837 1.01410 1.17826 0.93703 0.91389 0.85511 1.20425 1.10587 1.00485 0.90924 1.20778 0.93641 0.93105 0.97487 1.20286 1.05320 0.95819 0.94429 1.17767 0.83315 0.81081 0.86787 1.90633 1.44153 1.64472 1.40481 1.42948 1.27654 1.39215 1.04979 1.18871 0.94145 1.44433 0.91822 0.90173 1.25252 0.95283 0.93509 0.99153 1.69941 1.05570 1.31337 1.35757 0.86298 0.77777 0.77859 0.84594 1.21038 1.21009 1.19488 1.21819 0.98727 0.89881 0.92635 1.25242 0.80954 0.90444 0.77940 1.90827 1.27880 1.59545 1.54408 1.86552 1.62566 1.34257 1.46365 1.23048 1.00365 0.82793 0.99557 1.21260 0.96200 0.99265 0.91559 1.20409 1.09603 0.94128 0.98186 0.92049 0.91975 0.92767 0.91289 0.90574 0.91319 0.90610 0.92770 0.92033 0.91914 0.86199 0.85594 0.92862 0.88681 0.86939 0.92484 0.89174 0.92629 0.86003 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.24 37.16 0.38 -1.11 16 2 C 0.12 1.07 5.87 -4.04 -0.02 1.05 16 3 N -0.63 -6.94 2.59 -171.74 -0.44 -7.39 16 4 C 0.12 1.07 5.86 -4.04 -0.02 1.05 16 5 C -0.17 -1.40 10.24 37.16 0.38 -1.02 16 6 C 0.22 3.11 6.55 -83.84 -0.55 2.56 16 7 C -0.20 -3.08 9.16 -39.62 -0.36 -3.44 16 8 C -0.03 -0.57 9.59 -39.38 -0.38 -0.95 16 9 C -0.15 -3.29 5.40 -104.95 -0.57 -3.86 16 10 C 0.52 13.90 6.81 -12.52 -0.09 13.82 16 11 O -0.52 -15.95 14.38 5.25 0.08 -15.88 16 12 N -0.43 -11.06 2.12 -117.32 -0.25 -11.31 16 13 C -0.37 -10.36 8.82 -15.00 -0.13 -10.49 16 14 H 0.08 2.15 7.92 -52.48 -0.42 1.74 16 15 C 0.08 2.41 4.28 -17.45 -0.07 2.34 16 16 N -0.80 -24.81 11.74 55.50 0.65 -24.16 16 17 Si 0.91 22.59 29.61 -169.99 -5.03 17.55 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.10 1.98 5.47 -5.19 -0.03 1.95 16 22 C 0.42 8.91 5.98 36.00 0.22 9.13 16 23 O -0.45 -11.62 15.88 -18.75 -0.30 -11.92 16 24 O -0.38 -6.63 10.56 -39.25 -0.41 -7.04 16 25 C 0.04 0.53 10.56 101.05 1.07 1.59 16 26 C -0.06 -1.20 7.32 -39.38 -0.29 -1.48 16 27 C -0.20 -3.10 9.16 -39.62 -0.36 -3.47 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 32 H 0.08 0.68 6.16 -51.93 -0.32 0.37 16 33 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 34 H 0.08 0.72 6.17 -51.93 -0.32 0.40 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.12 1.52 6.11 -52.49 -0.32 1.20 16 39 H 0.13 2.35 8.03 -52.49 -0.42 1.93 16 40 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 41 H 0.10 1.75 8.12 -51.93 -0.42 1.32 16 42 H 0.11 2.06 4.29 -51.93 -0.22 1.83 16 43 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 44 H 0.09 0.93 8.14 -51.92 -0.42 0.50 16 45 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 46 H 0.12 2.39 4.00 -52.49 -0.21 2.18 16 47 H 0.12 1.57 6.11 -52.49 -0.32 1.25 16 LS Contribution 384.14 15.07 5.79 5.79 Total: -1.00 -36.90 384.14 -7.51 -44.40 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.75 Total: 2.28 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -0.83 Total: 7.66 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: -0.04 Total: -42.85 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -0.64 Total: -34.83 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.03 Total: 17.55 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.90 -7.51 -44.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180441735.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.173 kcal (2) G-P(sol) polarization free energy of solvation -36.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds